Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.7e-289 998.0 529 100.0
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.4e-277 959.1 529 97.4
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 3.1e-261 904.8 529 92.8
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.0e-256 889.8 529 92.1
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 1.8e-232 809.3 530 84.5
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.3e-232 808.9 551 82.9
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.1e-231 806.6 530 83.6
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 3.7e-222 775.0 527 80.6
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 4.5e-220 768.1 536 77.8
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 3.8e-219 765.0 522 78.9
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 2.5e-215 752.3 532 77.6
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 2.2e-214 749.2 531 76.8
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 5.3e-213 744.6 531 75.5
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 5.3e-213 744.6 531 76.8
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 9.1e-213 743.8 501 81.2
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 6.9e-205 717.6 529 73.9
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.0e-203 711.4 533 73.5
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.9e-202 709.5 530 72.8
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 3.2e-202 708.8 530 73.4
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.3e-200 702.6 526 73.6
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 3.0e-200 702.2 526 73.6
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.1e-199 700.3 532 72.6
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 7.4e-199 697.6 529 72.2
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 7.4e-199 697.6 532 72.7
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 1.3e-198 696.8 526 71.9
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 2.2e-198 696.0 522 73.8
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.2e-198 696.0 526 73.2
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 2.8e-198 695.7 529 71.5
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 4.8e-198 694.9 534 72.3
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.1e-197 693.7 529 71.5
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.4e-197 693.3 529 72.2
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 3.1e-197 692.2 531 72.7
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 5.3e-197 691.4 523 73.0
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.3e-197 691.4 530 71.5
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.0e-197 691.0 533 71.9
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 9.1e-197 690.6 533 71.9
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 9.1e-197 690.6 529 72.0
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 3.5e-196 688.7 529 71.8
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.3e-195 686.8 533 71.7
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.2e-195 686.0 526 72.2
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 3.8e-195 685.3 532 71.8
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.1e-194 683.7 532 71.4
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.5e-194 683.3 523 72.5
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.5e-194 683.3 528 72.2
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 9.4e-194 680.6 533 70.9
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 9.4e-194 680.6 512 73.0
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.1e-193 679.5 528 71.6
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 4.7e-193 678.3 533 70.7
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 6.1e-193 677.9 530 70.9
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 6.1e-193 677.9 530 70.6
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.4e-192 676.8 533 70.5
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.5e-191 673.3 527 71.0
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 2.0e-191 672.9 529 70.5
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 4.8e-190 668.3 525 70.1
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 1.8e-189 666.4 531 68.9
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 5.3e-189 664.8 531 68.7
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 5.3e-189 664.8 525 70.1
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.3e-187 660.2 521 71.4
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.3e-187 660.2 554 68.4
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 8.5e-187 657.5 523 69.2
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 7.2e-186 654.4 515 70.9
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 6.1e-185 651.4 529 69.2
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.0e-184 650.6 509 70.7
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 1.0e-184 650.6 528 68.6
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.3e-184 649.4 526 68.4
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 7.5e-183 644.4 531 67.8
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 1.3e-182 643.7 531 67.8
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 3.7e-182 642.1 513 71.0
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 7.0e-181 637.9 501 70.9
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 7.0e-181 637.9 529 68.8
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.6e-180 636.7 536 66.6
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 2.7e-180 636.0 529 67.9
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 3.5e-180 635.6 524 67.9
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.3e-179 632.9 470 74.0
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 3.8e-179 632.1 531 66.9
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.1e-178 630.6 541 65.4
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 1.5e-178 630.2 528 65.7
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.8e-177 625.9 527 65.8
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 3.6e-177 625.5 517 67.1
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 6.1e-177 624.8 529 68.8
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 9.8e-175 617.5 518 66.0
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 1.7e-174 616.7 518 66.4
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 6.3e-174 614.8 518 66.6
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 8.3e-174 614.4 517 65.8
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.4e-173 612.8 518 65.8
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.4e-173 612.8 535 65.4
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 4.1e-173 612.1 539 66.4
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 5.4e-173 611.7 518 65.6
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.0e-172 609.8 526 64.1
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 3.5e-172 609.0 540 66.1
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 1.0e-171 607.4 537 65.4
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.3e-171 606.3 450 75.3
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 2.5e-170 602.8 521 65.3
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 4.3e-170 602.1 533 62.3
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 4.0e-168 595.5 515 64.3
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.2e-167 594.0 515 64.1
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 4.4e-167 592.0 517 64.2
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.7e-166 590.1 533 61.9
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 9.2e-165 584.3 536 64.2
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 6.0e-164 581.6 531 61.2
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.7e-163 580.1 501 63.9
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 7.0e-157 558.1 468 66.9
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 6.2e-153 545.0 522 61.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 7.1e-149 531.6 410 71.7
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 2.3e-147 526.6 556 59.4
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 8.6e-147 524.6 509 60.3
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.4e-144 516.5 385 73.0
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.2e-137 494.2 511 55.6
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 9.0e-136 488.0 527 55.4
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 9.9e-135 484.6 518 57.3
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 6.2e-129 465.3 516 55.8
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 6.2e-129 465.3 491 59.1
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.8e-123 447.2 372 68.8
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 4.5e-119 432.6 482 52.7
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 2.9e-118 429.9 433 57.7
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.4e-117 427.6 423 61.0
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.6e-113 414.1 519 53.0
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 8.2e-105 385.2 381 60.6
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 8.2e-105 385.2 381 60.6
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.9e-93 347.4 249 77.9
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 3.0e-91 340.1 236 74.2
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 3.7e-89 333.2 253 75.9
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 3.8e-86 323.2 447 45.4
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.1e-85 321.6 454 46.9
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.7e-84 317.0 385 50.6
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 1.7e-81 307.8 353 50.7
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.6e-74 283.9 221 70.1
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 1.1e-72 278.5 415 42.4
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.5e-61 240.7 202 69.8
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.2e-58 231.9 438 37.9
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.5e-58 231.5 260 56.5
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 5.9e-55 219.5 310 47.7
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 2.1e-52 211.1 490 34.1
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 2.4e-48 197.6 132 78.8
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.5e-47 193.7 96 97.9
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 5.6e-45 186.4 430 33.0
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 3.6e-44 183.7 289 44.6
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 1.1e-40 172.2 91 93.4
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.3e-38 165.2 104 70.2
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 7.5e-34 149.4 87 83.9
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 8.4e-25 119.4 138 52.2
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.7e-23 114.4 185 43.2
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 6.0e-23 113.2 96 58.3
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-17 95.5 152 43.4
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 4.6e-15 87.0 66 69.7
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 9.9e-10 69.3 61 59.0
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 9.9e-10 69.3 61 59.0
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.9e-09 67.8 71 57.7
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 5.4e-08 63.5 63 60.3
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 9.3e-08 62.8 61 54.1
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.6e-07 62.0 44 75.0
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.3e-06 58.9 50 72.0


User provided reference genes

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