Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN01G1682 Fragaria x ananassa HOM05D003074 ORTHO05D002434 6.7e-69 263.8 130 100.0
FAN08G3684 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.6e-68 261.9 130 99.2
FAN25G1645 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.6e-68 261.9 130 99.2
FAN26G1625 Fragaria x ananassa HOM05D003074 ORTHO05D002434 8.3e-67 256.9 130 97.7
FvH4_3g02220 Fragaria vesca HOM05D003074 ORTHO05D002434 7.2e-63 243.8 130 93.8
RcHm_v2.0_Chr5g0003291 Rosa chinensis HOM05D003074 ORTHO05D002434 2.4e-42 175.6 131 71.0
MD10G1320500 Malus domestica HOM05D003074 ORTHO05D002434 2.4e-21 105.9 143 51.7
MD05G1345200 Malus domestica HOM05D003074 ORTHO05D002434 6.6e-16 87.8 146 46.6
Haze_06793 Corylus avellana HOM05D003074 ORTHO05D002434 2.8e-14 82.4 136 40.4
Cfa000232 Carpinus fangiana HOM05D003074 ORTHO05D002434 6.2e-14 81.3 138 40.6
Prupe.4G021600 Prunus persica HOM05D003074 ORTHO05D002434 9.0e-13 77.4 152 39.5
QL05p073377 Quercus lobata HOM05D003074 ORTHO05D002434 9.0e-13 77.4 142 40.1
Manes.16G007700 Manihot esculenta HOM05D003074 ORTHO05D002434 1.2e-12 77.0 139 42.4
CiPaw.09G091000 Carya illinoinensis HOM05D003074 ORTHO05D002434 2.0e-12 76.3 142 39.4
vmacro03644 Vaccinium macrocarpon HOM05D003074 ORTHO05D002434 4.4e-12 75.1 130 39.2
TWI38G1232 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 7.6e-12 74.3 138 39.1
Sed0007461 Sechium edule HOM05D003074 ORTHO05D002434 2.9e-11 72.4 130 38.5
Eucgr.D01318 Eucalyptus grandis HOM05D003074 ORTHO05D002434 3.8e-11 72.0 132 36.4
Rhsim13G0146000 Rhododendron simsii HOM05D002761 ORTHO05D003351 8.4e-11 70.9 130 37.7
RhsimUnG0109700 Rhododendron simsii HOM05D003074 ORTHO05D002434 8.4e-11 70.9 130 37.7
THA.LOC104812967 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 8.4e-11 70.9 130 33.1
ClCG03G004770 Citrullus lanatus HOM05D003074 ORTHO05D002434 1.4e-10 70.1 129 38.8
Potri.011G003100 Populus trichocarpa HOM05D003074 ORTHO05D002434 1.4e-10 70.1 137 38.7
Prupe.4G212400 Prunus persica HOM05D003074 ORTHO05D002434 5.4e-10 68.2 136 38.2
CiPaw.10G070500 Carya illinoinensis HOM05D003074 ORTHO05D002434 7.1e-10 67.8 139 36.0
Sed0010919 Sechium edule HOM05D003074 ORTHO05D002434 7.1e-10 67.8 135 37.0
Aa31LG6G3910 Aethionema arabicum HOM05D003074 ORTHO05D002434 9.3e-10 67.4 136 35.3
Manes.17G038600 Manihot esculenta HOM05D003074 ORTHO05D002434 1.2e-09 67.0 138 37.0
Sp7g20110 Schrenkiella parvula HOM05D003074 ORTHO05D002434 1.2e-09 67.0 136 37.5
Duzib268G1655 Durio zibethinus HOM05D003074 ORTHO05D002434 1.6e-09 66.6 137 35.8
FvH4_3g22640 Fragaria vesca HOM05D003074 ORTHO05D002434 1.6e-09 66.6 142 33.8
Thhalv10026602m.g Eutrema salsugineum HOM05D003074 ORTHO05D002434 2.7e-09 65.9 100 42.0
FAN16G0504 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.7e-09 65.9 142 33.1
FAN25G2410 Fragaria x ananassa HOM05D003074 ORTHO05D002434 2.7e-09 65.9 142 33.1
FAN21G2959 Fragaria x ananassa HOM05D003074 ORTHO05D002434 3.5e-09 65.5 143 32.9
FAN11G2929 Fragaria x ananassa HOM05D003074 ORTHO05D002434 4.6e-09 65.1 142 33.1
BcaNung01717 Brassica carinata HOM05D003074 ORTHO05D002434 6.0e-09 64.7 71 46.5
Ciclev10009680m.g Citrus clementina HOM05D003074 ORTHO05D002434 6.0e-09 64.7 138 35.5
BcaNung00825 Brassica carinata HOM05D003074 ORTHO05D002434 7.8e-09 64.3 97 41.2
Sed0026688 Sechium edule HOM05D003074 ORTHO05D002434 7.8e-09 64.3 131 35.9
Hma1.2p1_1222F.1_g268140 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 1.0e-08 63.9 130 35.4
Thecc.06G219600 Theobroma cacao HOM05D003074 ORTHO05D002434 1.0e-08 63.9 131 36.6
AL7G31910 Arabidopsis lyrata HOM05D003074 ORTHO05D002434 1.3e-08 63.5 73 43.8
MELO3C002460.2 Cucumis melo HOM05D003074 ORTHO05D002434 1.3e-08 63.5 137 36.5
CANSAT56G1803 Cannabis sativa HOM05D003074 ORTHO05D002434 1.7e-08 63.2 155 33.5
Sabra04G0008200 Salix brachista HOM05D003074 ORTHO05D002434 1.7e-08 63.2 137 35.8
MSTRG.12971 Avicennia marina HOM05D003074 ORTHO05D002434 2.3e-08 62.8 127 37.8
A03p53050 Brassica napus HOM05D003074 ORTHO05D002434 2.3e-08 62.8 71 43.7
C07p51480 Brassica napus HOM05D003074 ORTHO05D002434 2.3e-08 62.8 71 43.7
BolC7t45644H Brassica oleracea HOM05D003074 ORTHO05D002434 2.3e-08 62.8 71 43.7
BraA03t14377Z Brassica rapa HOM05D003074 ORTHO05D002434 2.3e-08 62.8 71 43.7
Carub.0007s1942 Capsella rubella HOM05D003074 ORTHO05D002434 3.0e-08 62.4 84 40.5
Glyma.15G107300 Glycine max HOM05D008677 ORTHO05D002434 3.0e-08 62.4 136 34.6
Hma1.2p1_0673F.1_g201330 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 3.0e-08 62.4 130 35.4
Psat1g181240 Pisum sativum HOM05D008677 ORTHO05D002434 3.0e-08 62.4 153 31.4
Manes.03G129100 Manihot esculenta HOM05D003074 ORTHO05D002434 3.9e-08 62.0 132 34.8
CSS0019776 Camellia sinensis var. sinensis HOM05D003074 ORTHO05D002434 5.1e-08 61.6 66 50.0
PSO675G3145 Papaver somniferum HOM05D003074 ORTHO05D002434 5.1e-08 61.6 132 35.6
COL.COLO4_09658 Corchorus olitorius HOM05D003074 ORTHO05D002434 6.6e-08 61.2 139 34.5
Dinv22264 Davidia involucrata HOM05D003074 ORTHO05D002434 8.7e-08 60.8 94 42.6
ECA234G3956 Erigeron canadensis HOM05D003074 ORTHO05D035136 8.7e-08 60.8 135 32.6
Lalb_Chr15g0087561 Lupinus albus HOM05D008677 ORTHO05D002434 8.7e-08 60.8 131 33.6
VMungo0540G1774 Vigna mungo HOM05D008677 ORTHO05D002434 8.7e-08 60.8 154 32.5
CARHR228720 Cardamine hirsuta HOM05D003074 ORTHO05D002434 1.1e-07 60.5 68 44.1
CiPaw.12G129500 Carya illinoinensis HOM05D003074 ORTHO05D002434 1.5e-07 60.1 144 31.9
Gohir.D05G369300 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.5e-07 60.1 135 33.3
Gohir.D10G012900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 1.5e-07 60.1 136 33.1
Gorai.009G438000 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.5e-07 60.1 135 33.3
Gorai.011G014600 Gossypium raimondii HOM05D003074 ORTHO05D002434 1.5e-07 60.1 136 33.1
Oeu063916.1 Olea europaea HOM05D003074 ORTHO05D002434 1.5e-07 60.1 134 36.6
Thecc.07G037400 Theobroma cacao HOM05D003074 ORTHO05D002434 2.5e-07 59.3 145 33.8
Atru.chr10.2213 Acer truncatum HOM05D003074 ORTHO05D002434 3.3e-07 58.9 68 50.0
Potri.004G015900 Populus trichocarpa HOM05D003074 ORTHO05D002434 3.3e-07 58.9 146 30.8
Haze_09674 Corylus avellana HOM05D003074 ORTHO05D002434 4.3e-07 58.5 139 34.5
Dinv40751 Davidia involucrata HOM05D003074 ORTHO05D002434 4.3e-07 58.5 142 33.8
Gohir.A04G016900 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.3e-07 58.5 140 32.1
Gohir.A10G013000 Gossypium hirsutum HOM05D003074 ORTHO05D002434 4.3e-07 58.5 131 32.1
PSO541G1700 Papaver somniferum HOM05D003074 ORTHO05D002434 4.3e-07 58.5 132 34.8
PGR004G0474 Punica granatum HOM05D003074 ORTHO05D002434 4.3e-07 58.5 133 31.6
RcHm_v2.0_Chr5g0039411 Rosa chinensis HOM05D003074 ORTHO05D002434 4.3e-07 58.5 69 47.8
Aqoxy1G02178 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 5.6e-07 58.2 129 34.9
CsaV3_1G010810 Cucumis sativus L. HOM05D003074 ORTHO05D002434 1.3e-06 57.0 104 41.3
Duzib192G0001 Durio zibethinus HOM05D003074 ORTHO05D002434 1.3e-06 57.0 130 33.8
Duzib213G0915 Durio zibethinus HOM05D003074 ORTHO05D002434 1.3e-06 57.0 136 33.8
QL08p010341 Quercus lobata HOM05D003074 ORTHO05D002434 1.3e-06 57.0 140 33.6
TAR624G1270 Trochodendron aralioides HOM05D003074 ORTHO05D002434 1.3e-06 57.0 139 33.8
Aqoxy1G02174 Aquilegia oxysepala HOM05D003074 ORTHO05D002434 1.6e-06 56.6 132 34.8
Lj4g0005888 Lotus japonicus HOM05D008677 ORTHO05D002434 1.6e-06 56.6 141 31.2
AT4G21920 Arabidopsis thaliana HOM05D003074 ORTHO05D002434 2.1e-06 56.2 68 41.2
MBI02_g07159_MAGBIO Magnolia biondii HOM05D003074 ORTHO05D002434 2.1e-06 56.2 138 33.3
MD11G1218800 Malus domestica HOM05D003074 ORTHO05D002434 2.1e-06 56.2 132 37.1
Manes.15G072100 Manihot esculenta HOM05D003074 ORTHO05D002434 2.1e-06 56.2 142 32.4
TWI38G1886 Tripterygium wilfordii HOM05D003074 ORTHO05D002434 2.1e-06 56.2 134 33.6
CARHR095990 Cardamine hirsuta HOM05D003074 ORTHO05D002434 2.8e-06 55.8 132 31.8
Eucgr.F03465 Eucalyptus grandis HOM05D003074 ORTHO05D002434 2.8e-06 55.8 136 33.8
Hma1.2p1_1091F.1_g255850 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 3.6e-06 55.5 62 50.0
Sopen03g005540 Solanum pennellii HOM05D037882 ORTHO05D002434 3.6e-06 55.5 133 30.8
ClCG01G022040 Citrullus lanatus HOM05D003074 ORTHO05D002434 4.8e-06 55.1 138 33.3
MELO3C007385.2 Cucumis melo HOM05D003074 ORTHO05D002434 4.8e-06 55.1 137 33.6
DCAR_004216 Daucus carota HOM05D003074 ORTHO05D002434 4.8e-06 55.1 72 44.4
Hma1.2p1_1162F.1_g262580 Hydrangea macrophylla HOM05D003074 ORTHO05D002434 4.8e-06 55.1 62 50.0
Sed0016637 Sechium edule HOM05D003074 ORTHO05D002434 4.8e-06 55.1 143 32.9
MSTRG.6917 Avicennia marina HOM05D003074 ORTHO05D002434 6.2e-06 54.7 134 32.8
THA.LOC104817856 Tarenaya hassleriana HOM05D003074 ORTHO05D002434 6.2e-06 54.7 130 31.5
ClCG05G014310 Citrullus lanatus HOM05D003074 ORTHO05D002434 8.1e-06 54.3 130 33.1
Migut.M01767 Erythranthe guttata HOM05D003074 ORTHO05D002434 8.1e-06 54.3 130 31.5
Lsat_1_v5_gn_9_93960 Lactuca sativa HOM05D003074 ORTHO05D002434 8.1e-06 54.3 59 49.2
Medtr2g023010 Medicago truncatula HOM05D008677 ORTHO05D002434 8.1e-06 54.3 134 31.3
PGR042G1468 Punica granatum HOM05D003074 ORTHO05D002434 8.1e-06 54.3 137 33.6


User provided reference genes

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