Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 7.0e-124 447.2 211 100.0
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.8e-119 432.6 211 96.7
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 4.0e-119 431.4 211 96.2
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.3e-97 357.5 209 77.0
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 7.3e-97 357.5 208 79.8
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.8e-95 352.8 208 78.4
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 3.1e-95 352.1 208 77.4
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 6.8e-95 350.9 208 78.4
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 6.8e-95 350.9 208 77.9
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 8.9e-95 350.5 210 78.1
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 1.5e-94 349.7 209 78.0
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.6e-94 349.0 208 76.0
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 3.4e-94 348.6 208 76.9
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 4.4e-94 348.2 209 76.6
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 7.5e-94 347.4 207 76.3
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 9.8e-94 347.1 208 77.4
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 9.8e-94 347.1 208 76.4
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.3e-93 346.7 208 76.4
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.7e-93 346.3 209 76.1
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 2.2e-93 345.9 207 76.8
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 2.2e-93 345.9 207 76.3
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 2.2e-93 345.9 208 77.4
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 3.7e-93 345.1 209 74.6
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 4.9e-93 344.7 208 76.4
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 8.3e-93 344.0 208 75.5
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 8.3e-93 344.0 208 76.4
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.1e-92 343.6 208 76.4
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.4e-92 343.2 211 75.4
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.9e-92 342.8 208 76.4
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.9e-92 342.8 207 75.8
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.9e-92 342.8 209 73.7
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 2.4e-92 342.4 208 76.0
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 3.2e-92 342.0 208 75.5
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 3.2e-92 342.0 208 76.4
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 4.1e-92 341.7 209 76.6
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.1e-92 341.7 207 75.8
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 4.1e-92 341.7 207 75.8
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 5.4e-92 341.3 208 76.0
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.1e-92 340.9 208 73.6
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 9.2e-92 340.5 209 76.1
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.6e-91 339.7 208 75.5
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 1.6e-91 339.7 208 74.5
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 1.6e-91 339.7 208 74.5
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 1.6e-91 339.7 208 74.0
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.1e-91 339.3 208 74.0
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 2.1e-91 339.3 208 74.5
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 3.5e-91 338.6 208 74.0
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 3.5e-91 338.6 205 76.6
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 4.6e-91 338.2 208 75.5
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 4.6e-91 338.2 211 73.9
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.0e-91 337.8 208 73.1
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 7.8e-91 337.4 209 73.2
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 7.8e-91 337.4 209 73.2
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.8e-91 337.4 208 73.1
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.3e-90 335.9 208 73.1
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 5.1e-90 334.7 208 73.6
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 6.6e-90 334.3 208 74.0
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 8.6e-90 334.0 211 71.1
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.1e-89 333.6 207 75.4
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.5e-89 333.2 208 73.1
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.9e-89 332.8 208 73.1
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.9e-89 332.8 208 75.0
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 2.5e-89 332.4 208 75.0
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.5e-89 332.4 208 72.1
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.5e-89 332.4 208 72.1
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 3.3e-89 332.0 209 73.7
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 4.3e-89 331.6 209 72.2
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 4.3e-89 331.6 208 73.1
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 4.3e-89 331.6 208 73.1
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 5.6e-89 331.3 209 72.7
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 7.3e-89 330.9 209 71.8
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 7.3e-89 330.9 209 73.2
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 7.3e-89 330.9 209 73.2
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.3e-89 330.9 209 72.7
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.2e-88 330.1 212 72.2
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.2e-88 330.1 209 71.8
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.6e-88 329.7 209 72.7
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.8e-88 328.9 208 73.6
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.6e-88 328.6 208 74.0
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 3.6e-88 328.6 208 74.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 4.7e-88 328.2 207 72.0
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.4e-87 326.6 208 72.1
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.8e-87 326.2 209 71.8
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 2.3e-87 325.9 198 75.8
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 4.0e-87 325.1 209 70.8
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.2e-87 324.7 208 70.7
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.2e-87 324.7 208 70.7
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 5.2e-87 324.7 210 72.9
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.2e-87 324.7 208 71.6
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 6.8e-87 324.3 209 70.8
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 6.8e-87 324.3 208 70.7
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 8.9e-87 323.9 208 69.2
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-86 323.6 208 70.7
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.2e-86 323.6 208 72.6
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.0e-86 322.8 208 70.7
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.6e-86 322.4 210 70.0
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 4.4e-86 321.6 211 68.7
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 5.8e-86 321.2 207 70.0
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.9e-85 318.9 208 70.7
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.7e-85 318.5 207 70.0
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.9e-85 318.2 209 70.3
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.1e-84 317.0 208 70.7
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.4e-84 316.6 208 68.3
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.4e-84 315.8 208 69.2
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 3.2e-84 315.5 208 69.2
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 9.2e-84 313.9 208 70.7
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 4.6e-83 311.6 208 70.2
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.3e-82 310.1 209 69.9
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 3.0e-82 308.9 208 67.8
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.9e-81 306.2 210 64.3
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 5.6e-81 304.7 208 67.3
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.6e-80 303.1 208 67.8
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.1e-80 302.8 209 66.0
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 8.1e-80 300.8 207 66.2
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.8e-79 299.7 210 66.7
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.8e-79 299.7 208 66.3
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 5.2e-79 298.1 186 72.0
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 7.6e-78 294.3 208 66.8
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.2e-76 288.9 207 65.2
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 9.3e-76 287.3 208 63.9
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 9.3e-76 287.3 234 58.1
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.7e-74 283.1 207 63.3
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 3.0e-74 282.3 210 61.0
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 5.1e-74 281.6 185 71.9
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 5.1e-74 281.6 207 63.3
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 8.7e-74 280.8 207 63.8
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.1e-73 280.4 207 62.8
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.9e-73 279.6 181 69.6
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 2.5e-73 279.3 207 62.8
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.5e-73 279.3 207 62.8
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 3.3e-73 278.9 207 62.8
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 3.3e-73 278.9 207 62.8
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 4.3e-73 278.5 207 62.3
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 5.6e-73 278.1 207 61.8
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 9.6e-73 277.3 207 62.3
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.6e-72 275.4 208 62.0
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 8.1e-72 274.2 165 75.2
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.1e-71 272.3 207 62.3
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.1e-71 272.3 207 62.3
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 3.4e-70 268.9 207 60.9
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 3.4e-70 268.9 207 60.9
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 7.1e-68 261.2 211 57.8
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 6.6e-66 254.6 209 54.1
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 9.6e-65 250.8 209 60.3
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 8.1e-64 247.7 170 68.8
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.0e-59 231.5 130 82.3
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 1.3e-56 223.8 208 55.3
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.0e-53 214.2 212 50.5
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 5.1e-50 201.8 163 58.9
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.4e-44 183.7 131 67.2
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 7.1e-44 181.4 115 73.0
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.1e-43 179.9 113 75.2
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.1e-41 174.1 104 76.0
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.2e-37 159.8 102 71.6
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 7.9e-35 151.4 104 62.5
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.1e-33 147.5 83 79.5
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.1e-33 147.5 103 65.0
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 5.5e-28 128.6 117 53.0
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 2.7e-27 126.3 67 83.6
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 1.0e-26 124.4 88 61.4
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 3.0e-26 122.9 203 36.5
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 1.1e-23 114.4 65 80.0
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.2e-18 95.5 64 65.6


User provided reference genes

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