Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 9.7e-95 350.1 176 100.0
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.1e-85 318.2 173 90.2
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 7.0e-45 184.5 172 50.6
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 7.3e-42 174.5 171 52.6
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 2.8e-41 172.6 135 61.5
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 4.7e-41 171.8 170 51.8
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.4e-40 170.2 169 47.3
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 1.4e-40 170.2 169 49.1
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 4.0e-40 168.7 176 50.0
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 4.0e-40 168.7 172 52.3
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 8.9e-40 167.5 168 48.2
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 1.5e-39 166.8 173 50.3
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 4.4e-39 165.2 163 54.6
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 4.4e-39 165.2 172 47.7
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 5.8e-39 164.9 144 54.2
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 7.5e-39 164.5 174 49.4
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 9.9e-39 164.1 178 49.4
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 3.7e-38 162.2 166 47.0
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 6.4e-38 161.4 144 52.8
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 8.3e-38 161.0 154 50.0
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 4.1e-37 158.7 172 45.9
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 7.1e-37 157.9 157 49.7
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 7.1e-37 157.9 157 49.7
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 7.1e-37 157.9 156 51.9
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 3.5e-36 155.6 182 46.7
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 6.0e-36 154.8 161 49.7
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.0e-35 154.1 135 56.3
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 1.0e-35 154.1 145 51.7
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 2.3e-35 152.9 171 49.7
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.0e-35 152.5 165 46.7
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 3.0e-35 152.5 162 49.4
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 1.1e-34 150.6 150 49.3
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 1.5e-34 150.2 140 50.7
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.9e-34 149.8 144 52.1
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 1.9e-34 149.8 142 50.0
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.9e-34 149.8 175 50.9
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 2.5e-34 149.4 149 47.0
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 3.3e-34 149.1 178 44.9
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 9.5e-34 147.5 147 49.7
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 9.5e-34 147.5 167 46.1
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 9.5e-34 147.5 167 46.1
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 9.5e-34 147.5 162 48.1
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 1.2e-33 147.1 165 47.9
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 1.6e-33 146.7 142 50.0
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 1.6e-33 146.7 166 45.2
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.1e-33 146.4 142 48.6
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 2.8e-33 146.0 145 50.3
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 2.8e-33 146.0 163 46.6
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 3.6e-33 145.6 174 43.7
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 3.6e-33 145.6 150 49.3
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 4.7e-33 145.2 168 45.2
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 6.2e-33 144.8 167 44.9
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 6.2e-33 144.8 144 50.0
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 8.1e-33 144.4 146 48.6
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 8.1e-33 144.4 157 47.1
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 1.1e-32 144.1 167 44.3
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.4e-32 142.9 160 44.4
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 3.1e-32 142.5 161 42.2
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 4.0e-32 142.1 175 43.4
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 4.0e-32 142.1 179 43.6
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 5.2e-32 141.7 165 43.6
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 6.8e-32 141.4 170 43.5
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 8.9e-32 141.0 141 50.4
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.5e-31 140.2 141 46.8
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.5e-31 140.2 141 46.8
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 1.5e-31 140.2 167 43.7
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 2.0e-31 139.8 163 44.8
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.6e-31 139.4 143 47.6
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 4.4e-31 138.7 176 42.6
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 5.8e-31 138.3 167 43.1
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 1.3e-30 137.1 138 48.6
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 3.8e-30 135.6 138 47.8
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 8.4e-30 134.4 168 43.5
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 8.4e-30 134.4 178 41.6
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 1.4e-29 133.7 179 39.1
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.4e-29 133.7 164 42.7
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.4e-29 132.9 127 47.2
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 3.2e-29 132.5 154 41.6
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 4.1e-29 132.1 130 50.0
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 5.4e-29 131.7 162 43.2
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 5.4e-29 131.7 167 42.5
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.2e-28 130.6 157 42.7
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.2e-28 130.6 162 42.6
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 6.0e-28 128.3 165 44.2
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 6.0e-28 128.3 189 38.6
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 7.8e-28 127.9 172 40.1
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 7.8e-28 127.9 165 42.4
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 1.0e-27 127.5 174 39.7
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 1.0e-27 127.5 143 42.7
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.7e-27 126.7 171 42.1
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.7e-27 126.7 152 42.8
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.3e-27 126.3 183 39.3
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 5.1e-27 125.2 171 41.5
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 6.6e-27 124.8 165 38.8
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 8.7e-27 124.4 148 39.2
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.1e-26 124.0 160 41.9
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.9e-26 123.2 163 40.5
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 3.3e-26 122.5 138 44.9
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 3.3e-26 122.5 158 39.9
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 4.3e-26 122.1 136 44.1
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 4.3e-26 122.1 162 39.5
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 5.6e-26 121.7 164 42.1
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 5.6e-26 121.7 164 42.1
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 5.6e-26 121.7 164 42.1
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 9.6e-26 120.9 161 39.8
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 9.6e-26 120.9 137 43.1
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 1.2e-25 120.6 167 39.5
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.2e-25 120.6 169 40.2
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 1.6e-25 120.2 143 44.8
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.8e-25 119.4 148 39.9
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 3.6e-25 119.0 136 46.3
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 4.7e-25 118.6 162 38.9
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 4.7e-25 118.6 162 38.9
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 4.7e-25 118.6 162 40.1
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 4.7e-25 118.6 162 40.1
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 6.2e-25 118.2 163 41.7
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 8.1e-25 117.9 161 41.0
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 3.1e-24 115.9 149 43.6
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 3.1e-24 115.9 173 41.6
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 3.1e-24 115.9 173 41.6
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 3.1e-24 115.9 172 41.3
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 4.0e-24 115.5 139 42.4
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 4.0e-24 115.5 172 39.5
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 4.0e-24 115.5 162 37.7
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 5.2e-24 115.2 166 36.7
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 5.2e-24 115.2 143 40.6
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 6.9e-24 114.8 164 37.2
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 6.9e-24 114.8 162 40.7
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.2e-23 114.0 139 39.6
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 1.5e-23 113.6 173 40.5
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.0e-23 113.2 136 44.9
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 2.6e-23 112.8 162 38.3
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 3.4e-23 112.5 136 44.9
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 3.4e-23 112.5 176 39.8
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 3.4e-23 112.5 164 40.9
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 3.4e-23 112.5 165 40.6
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 3.4e-23 112.5 164 40.9
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 3.4e-23 112.5 164 40.9
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 5.8e-23 111.7 165 40.6
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.8e-23 111.7 142 41.5
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 7.6e-23 111.3 165 41.8
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 7.6e-23 111.3 165 40.0
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.3e-22 110.5 140 40.0
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 1.3e-22 110.5 167 40.1
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 1.7e-22 110.2 152 42.1
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 2.2e-22 109.8 136 41.9
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 2.9e-22 109.4 189 37.0
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 2.9e-22 109.4 165 39.4
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 3.8e-22 109.0 165 40.0
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 3.8e-22 109.0 163 40.5
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 3.8e-22 109.0 179 34.1
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.4e-21 106.3 137 42.3
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 2.4e-21 106.3 181 37.6
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 2.4e-21 106.3 126 44.4
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 3.2e-21 105.9 137 42.3
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 3.2e-21 105.9 137 42.3
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 5.4e-21 105.1 137 42.3
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 5.4e-21 105.1 137 42.3
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 5.4e-21 105.1 137 42.3
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 7.1e-21 104.8 139 41.7
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.6e-20 103.6 164 37.8
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 2.1e-20 103.2 186 33.3
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 3.5e-20 102.4 88 50.0
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.3e-19 100.5 158 39.2
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 1.7e-19 100.1 137 41.6
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.3e-19 99.8 179 34.1
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 2.3e-19 99.8 171 36.8
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 3.0e-19 99.4 171 36.8
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 5.1e-19 98.6 170 36.5
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 6.6e-19 98.2 141 38.3
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.1e-18 97.4 148 43.2
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 5.6e-18 95.1 169 36.1
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.6e-17 93.6 172 36.0
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.4e-16 89.7 100 43.0
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 4.0e-16 89.0 91 44.0
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 1.3e-14 84.0 92 42.4
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 2.2e-14 83.2 91 45.1
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 7.9e-12 74.7 79 48.1
SEGI_28043 Sequoiadendron giganteum HOM05D003761 ORTHO05D004412 3.4e-07 59.3 114 32.5
SEGI_22916 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 5.8e-07 58.5 118 33.1
SEGI_33454 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 9.9e-07 57.8 97 38.1
RcHm_v2.0_Chr5g0000571 Rosa chinensis HOM05D003761 ORTHO05D004412 1.7e-06 57.0 56 51.8
SEGI_00399 Sequoiadendron giganteum HOM05D003328 ORTHO05D003722 2.2e-06 56.6 123 31.7


User provided reference genes

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