Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 2.2e-290 1001.5 486 100.0
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.5e-201 706.4 489 70.8
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 6.8e-199 697.6 489 70.3
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 6.8e-199 697.6 489 70.3
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 1.2e-195 686.8 500 68.2
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 8.6e-194 680.6 501 67.9
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 7.3e-193 677.6 489 67.3
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 3.4e-190 668.7 489 68.1
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 1.9e-188 662.9 489 67.9
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 4.6e-187 658.3 492 67.1
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 7.8e-187 657.5 492 66.9
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.0e-186 657.1 491 66.4
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.1e-186 654.8 492 66.9
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 8.7e-186 654.1 489 66.5
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 1.9e-185 652.9 489 66.3
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 4.3e-185 651.7 489 66.9
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.3e-184 650.2 491 64.6
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 1.3e-184 650.2 491 64.6
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 1.8e-183 646.4 494 67.4
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 3.4e-182 642.1 498 65.3
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.7e-181 639.8 491 65.0
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 3.5e-179 632.1 489 63.4
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 7.9e-179 630.9 492 64.2
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 1.0e-178 630.6 495 64.0
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.5e-177 625.9 493 63.5
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.5e-177 625.9 493 63.5
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 3.3e-177 625.5 480 66.0
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 4.3e-177 625.2 496 64.7
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 5.6e-177 624.8 495 65.5
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.6e-176 623.2 493 64.9
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.8e-176 622.5 489 63.4
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.8e-176 622.5 447 67.3
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 3.6e-176 622.1 483 65.0
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 8.1e-176 620.9 484 64.9
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 1.4e-175 620.2 484 65.5
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 1.4e-175 620.2 496 63.5
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 5.3e-175 618.2 399 75.2
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.5e-174 616.7 489 61.3
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 4.5e-174 615.1 490 62.9
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 7.6e-174 614.4 491 63.1
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 6.0e-171 604.7 399 72.9
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 1.0e-170 604.0 445 66.5
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 1.5e-169 600.1 557 55.5
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 2.6e-166 589.3 492 62.8
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 7.6e-166 587.8 455 67.5
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 1.3e-165 587.0 461 63.1
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 1.7e-165 586.6 489 60.9
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 2.2e-165 586.3 741 46.2
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.9e-164 583.2 490 60.6
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.2e-164 582.4 473 61.9
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 7.1e-164 581.3 493 59.8
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 7.1e-164 581.3 495 60.6
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.9e-161 573.2 500 59.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 1.9e-161 573.2 469 63.3
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 3.3e-161 572.4 437 64.3
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 9.6e-161 570.9 455 62.6
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 1.3e-160 570.5 404 69.3
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 1.3e-160 570.5 489 58.7
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 2.8e-160 569.3 489 59.1
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 8.2e-160 567.8 455 61.8
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.1e-159 567.4 490 59.6
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 9.0e-159 564.3 460 61.3
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 3.4e-158 562.4 474 58.4
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 3.4e-158 562.4 478 59.6
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.7e-157 560.1 497 58.1
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 2.2e-157 559.7 491 58.7
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.6e-155 552.4 490 58.0
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 1.8e-154 550.1 490 58.0
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.1e-153 547.4 493 58.0
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 5.7e-153 545.0 490 58.2
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 9.7e-153 544.3 491 57.4
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 1.8e-151 540.0 562 51.2
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 2.4e-151 539.7 415 65.3
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 3.1e-151 539.3 408 65.2
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 1.5e-150 537.0 399 66.4
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 2.6e-150 536.2 429 62.9
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 2.6e-150 536.2 429 62.9
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 4.5e-150 535.4 429 62.7
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 5.9e-150 535.0 495 55.6
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.0e-149 534.3 416 64.2
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 2.2e-149 533.1 447 60.2
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 3.8e-149 532.3 398 63.6
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 5.0e-149 531.9 404 65.3
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 8.5e-149 531.2 404 65.1
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.1e-148 530.8 453 58.7
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.5e-148 529.6 406 63.8
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 4.2e-148 528.9 427 63.2
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 9.4e-148 527.7 429 61.5
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 9.4e-148 527.7 406 63.5
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.2e-147 527.3 484 57.9
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 2.1e-147 526.6 487 56.7
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 7.9e-147 524.6 488 56.4
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 1.4e-146 523.9 484 56.2
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 1.8e-146 523.5 515 55.1
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 2.3e-146 523.1 469 58.4
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-146 523.1 437 61.6
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 2.3e-146 523.1 469 58.4
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 2.3e-146 523.1 469 58.4
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 3.0e-146 522.7 495 55.4
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 3.0e-146 522.7 484 56.0
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.9e-146 522.3 406 63.5
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 5.1e-146 521.9 427 63.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 6.7e-146 521.5 498 56.2
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.5e-145 520.4 488 57.0
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 1.5e-145 520.4 428 63.3
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 3.3e-145 519.2 489 56.0
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 3.3e-145 519.2 424 63.2
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 5.7e-145 518.5 455 58.7
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 7.4e-145 518.1 495 56.0
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.7e-144 516.9 514 53.9
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 1.7e-144 516.9 461 56.6
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 2.2e-144 516.5 402 64.2
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.2e-144 516.5 428 62.9
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 1.4e-143 513.8 485 55.7
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 2.4e-143 513.1 470 58.1
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 3.1e-143 512.7 536 52.1
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 3.1e-143 512.7 470 58.1
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 3.1e-143 512.7 504 54.6
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 4.1e-143 512.3 408 63.0
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 5.3e-143 511.9 402 63.2
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.5e-142 510.4 404 64.1
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 2.6e-142 509.6 495 56.0
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 4.5e-142 508.8 418 62.9
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 4.5e-142 508.8 368 68.5
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 5.9e-142 508.4 557 52.6
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 7.7e-142 508.1 460 57.4
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 3.8e-141 505.8 496 54.8
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 5.0e-141 505.4 514 53.3
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 1.1e-140 504.2 366 67.5
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 2.5e-140 503.1 405 61.5
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 3.9e-138 495.7 520 53.1
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.1e-137 494.2 408 60.5
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 9.7e-137 491.1 400 61.2
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.3e-136 490.7 317 72.6
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 2.2e-133 479.9 398 59.8
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.2e-133 479.9 450 55.1
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.5e-132 477.2 378 61.9
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 1.7e-128 463.8 423 57.4
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 3.7e-128 462.6 399 57.1
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 3.1e-127 459.5 403 55.8
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 7.0e-127 458.4 608 44.6
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 4.8e-120 435.6 311 67.2
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 4.1e-119 432.6 403 53.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 1.9e-116 423.7 378 58.5
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 4.2e-116 422.5 402 53.5
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.5e-108 397.5 380 55.5
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 6.6e-85 318.9 274 61.7
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 4.7e-83 312.8 256 61.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.2e-81 308.1 220 64.1
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 4.1e-79 299.7 202 68.3
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 8.7e-77 292.0 221 65.2
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 7.3e-76 288.9 220 64.1
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 1.6e-75 287.7 250 58.4
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 5.3e-66 256.1 238 56.3
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.9e-63 247.7 302 44.4
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.3e-60 236.5 412 40.0
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.2e-54 218.4 475 32.8
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 7.4e-52 209.1 303 39.9
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-36 158.7 162 53.7
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 5.0e-32 143.3 266 35.7
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 8.5e-32 142.5 160 48.8
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 1.6e-30 138.3 120 57.5
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 2.3e-29 134.4 286 32.9
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.1e-28 132.1 656 23.9
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 4.8e-27 126.7 91 67.0
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.1e-26 123.6 131 48.1
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-21 108.6 123 51.2
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.8e-21 108.2 101 56.4
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 5.0e-16 90.1 104 50.0
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 6.5e-16 89.7 370 25.9
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 1.4e-13 82.0 234 30.3
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.3e-11 75.5 60 56.7
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.8e-08 63.9 47 57.4
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 9.4e-07 59.3 49 55.1


User provided reference genes

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