Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.9e-116 422.9 280 100.0
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 7.8e-46 188.3 278 45.7
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 2.9e-45 186.4 278 45.7
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.6e-43 180.6 282 49.3
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.6e-43 180.6 284 48.6
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.1e-43 180.3 281 46.6
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 2.8e-43 179.9 283 44.9
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 3.6e-43 179.5 284 46.5
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 6.1e-43 178.7 281 44.1
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 1.8e-42 177.2 284 43.3
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 9.8e-41 171.4 282 42.9
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 2.9e-40 169.9 283 46.3
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 4.9e-40 169.1 282 42.6
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 2.4e-39 166.8 282 44.0
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 4.1e-39 166.0 277 41.9
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 7.0e-39 165.2 279 46.6
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 1.6e-38 164.1 292 45.5
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 4.6e-38 162.5 277 40.4
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 1.0e-37 161.4 280 41.8
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.7e-37 160.6 281 44.8
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 3.0e-37 159.8 282 42.6
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 5.0e-37 159.1 217 46.5
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 8.6e-37 158.3 280 41.4
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 5.6e-36 155.6 288 42.4
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 7.3e-36 155.2 280 43.6
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.2e-35 154.5 219 47.9
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 1.2e-35 154.5 277 40.4
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 1.8e-34 150.6 275 40.0
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.8e-34 150.6 279 40.1
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 2.3e-34 150.2 284 46.1
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 4.0e-34 149.4 283 41.7
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 6.8e-34 148.7 277 41.5
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 8.9e-34 148.3 277 40.4
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 8.9e-34 148.3 285 39.6
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.2e-33 147.9 281 39.5
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 2.0e-33 147.1 274 39.4
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 2.0e-33 147.1 282 42.6
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 1.3e-32 144.4 284 40.1
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.7e-32 144.1 284 40.5
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 1.7e-32 144.1 286 38.1
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 2.9e-32 143.3 287 40.8
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 3.7e-32 142.9 279 38.4
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 3.7e-32 142.9 292 38.7
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 1.4e-31 141.0 219 43.8
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 3.2e-31 139.8 211 47.9
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 7.1e-31 138.7 285 37.2
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 4.6e-30 136.0 287 40.4
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 4.6e-30 136.0 278 39.9
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 6.0e-30 135.6 279 36.9
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 1.0e-29 134.8 282 41.8
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 1.7e-29 134.0 286 39.2
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 3.9e-29 132.9 278 38.8
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 5.1e-29 132.5 279 39.1
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 1.1e-28 131.3 263 39.5
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.9e-28 130.6 279 34.4
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 2.5e-28 130.2 278 37.4
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 3.3e-28 129.8 279 37.6
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 4.3e-28 129.4 277 37.9
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 1.6e-27 127.5 283 37.1
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 2.1e-27 127.1 284 35.9
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.8e-27 126.7 218 42.2
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 4.7e-27 125.9 282 37.2
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 4.7e-27 125.9 218 42.2
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 4.7e-27 125.9 279 36.6
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.2e-27 125.6 281 40.6
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 6.2e-27 125.6 276 34.8
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 6.2e-27 125.6 282 35.8
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 8.1e-27 125.2 279 35.8
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 1.1e-26 124.8 277 34.3
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 1.4e-26 124.4 290 46.2
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 1.4e-26 124.4 281 40.9
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 1.8e-26 124.0 280 36.8
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.8e-26 124.0 281 40.9
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 2.3e-26 123.6 285 39.3
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.3e-26 123.6 218 41.7
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.1e-26 123.2 282 34.0
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 5.2e-26 122.5 271 37.3
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 3.4e-25 119.8 293 35.5
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 7.6e-25 118.6 282 35.5
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.3e-24 117.9 280 36.8
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 2.9e-24 116.7 279 37.6
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 8.4e-24 115.2 282 34.0
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 1.9e-23 114.0 288 35.4
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 1.9e-23 114.0 288 35.4
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-23 114.0 283 36.4
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 2.4e-23 113.6 286 35.3
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 3.2e-23 113.2 283 33.9
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 4.1e-23 112.8 281 40.6
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 4.1e-23 112.8 285 34.4
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 4.1e-23 112.8 181 47.5
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 5.4e-23 112.5 285 34.4
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 5.4e-23 112.5 285 34.4
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 1.2e-22 111.3 282 36.2
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.2e-22 111.3 286 35.0
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 1.6e-22 110.9 224 38.8
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.6e-22 110.9 280 37.5
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 1.6e-22 110.9 282 34.4
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 4.6e-22 109.4 283 33.9
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 6.0e-22 109.0 281 33.8
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 6.0e-22 109.0 273 34.4
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 7.8e-22 108.6 276 33.3
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 1.3e-21 107.8 281 34.2
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 1.3e-21 107.8 281 34.2
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 1.3e-21 107.8 281 34.2
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 1.3e-21 107.8 279 35.5
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 1.7e-21 107.5 301 33.6
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 3.0e-21 106.7 288 34.7
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 3.0e-21 106.7 282 33.7
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 3.9e-21 106.3 282 34.0
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 5.1e-21 105.9 286 33.6
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 6.6e-21 105.5 289 33.2
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 6.6e-21 105.5 278 34.2
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 8.6e-21 105.1 286 32.2
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-20 104.0 280 33.6
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 3.3e-20 103.2 284 33.1
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 9.6e-20 101.7 296 32.8
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 1.2e-19 101.3 278 33.1
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 1.6e-19 100.9 283 35.3
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 1.6e-19 100.9 173 43.9
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 2.8e-19 100.1 179 41.3
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 3.6e-19 99.8 294 33.7
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 4.7e-19 99.4 284 30.3
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 4.7e-19 99.4 284 30.3
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 4.7e-19 99.4 284 30.3
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 6.2e-19 99.0 217 36.9
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 8.1e-19 98.6 199 38.2
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 1.4e-18 97.8 161 44.1
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 2.4e-18 97.1 217 36.4
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 5.8e-17 92.4 286 30.4
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 1.3e-16 91.3 282 31.6
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.7e-16 90.9 104 55.8
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.9e-16 90.1 105 54.3
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 4.9e-16 89.4 210 35.7
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.4e-16 89.0 105 54.3
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 1.4e-15 87.8 155 41.3
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 1.9e-15 87.4 214 35.0
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 2.4e-15 87.0 155 40.6
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 9.3e-15 85.1 156 44.2
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 2.1e-14 84.0 175 36.6
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 7.8e-14 82.0 269 30.1
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.3e-13 81.3 135 41.5
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 3.0e-13 80.1 284 31.3
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 2.1e-11 73.9 282 29.4
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.1e-11 73.9 204 35.3
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 6.2e-11 72.4 288 31.2
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 4.0e-10 69.7 179 36.3
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 4.0e-10 69.7 117 42.7
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.2e-09 68.2 153 35.9
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 3.4e-09 66.6 90 45.6
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 2.2e-08 63.9 118 42.4
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.8e-08 63.2 203 30.0
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 8.4e-08 62.0 287 26.1
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 1.1e-07 61.6 149 35.6
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 1.4e-07 61.2 87 48.3
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 2.4e-07 60.5 202 29.7
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 4.2e-07 59.7 133 38.3
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.1e-06 57.4 52 59.6
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 4.6e-06 56.2 96 40.6


User provided reference genes

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