Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00824 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.8e-202 708.4 346 100.0
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 8.4e-159 563.9 494 62.6
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 7.1e-158 560.8 494 62.6
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.8e-137 493.0 444 61.9
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 7.7e-120 434.5 386 61.4
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 1.0e-108 397.5 462 48.3
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 1.8e-108 396.7 474 48.3
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 2.0e-107 393.3 493 45.6
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 5.7e-107 391.7 492 45.7
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 7.5e-107 391.3 492 45.7
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 2.2e-106 389.8 482 45.4
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 2.2e-106 389.8 491 45.0
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 3.7e-106 389.0 482 46.3
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 8.2e-106 387.9 480 44.6
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 1.1e-105 387.5 490 45.3
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 2.7e-104 382.9 462 46.1
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 5.9e-104 381.7 482 44.6
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 7.7e-104 381.3 484 43.6
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 1.0e-103 380.9 482 44.6
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 2.9e-103 379.4 476 47.1
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 1.1e-102 377.5 482 45.6
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 1.9e-102 376.7 482 45.6
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 3.2e-102 375.9 479 45.7
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 7.2e-102 374.8 497 44.5
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 1.6e-101 373.6 486 44.4
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 1.4e-100 370.5 493 43.8
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 2.3e-100 369.8 485 44.5
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 5.2e-100 368.6 473 45.0
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 6.8e-100 368.2 486 44.0
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.2e-99 367.5 514 42.8
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 1.5e-99 367.1 484 43.4
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 4.4e-99 365.5 477 43.6
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 7.5e-99 364.8 484 43.2
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 1.7e-98 363.6 485 43.7
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 6.3e-98 361.7 492 43.1
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 1.1e-97 360.9 482 43.8
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 1.4e-97 360.5 477 43.8
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 2.4e-97 359.8 488 42.4
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 3.1e-97 359.4 466 45.3
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 3.1e-97 359.4 490 43.3
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 4.5e-96 355.5 472 43.9
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 1.0e-95 354.4 491 42.6
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 1.3e-95 354.0 505 41.2
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 2.3e-95 353.2 494 41.9
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 3.8e-95 352.4 481 42.2
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 3.8e-95 352.4 475 43.2
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 3.8e-95 352.4 464 44.8
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 3.8e-95 352.4 468 44.2
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 5.0e-95 352.1 478 43.3
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 6.6e-95 351.7 481 42.0
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 8.6e-95 351.3 473 43.6
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 1.1e-94 350.9 482 42.3
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 1.1e-94 350.9 440 45.0
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 1.9e-94 350.1 470 43.2
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 7.2e-94 348.2 463 44.5
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 7.2e-94 348.2 463 44.5
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 7.2e-94 348.2 491 40.9
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 9.5e-94 347.8 502 42.2
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 2.1e-93 346.7 455 44.0
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 2.8e-93 346.3 474 43.0
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 6.1e-93 345.1 477 43.0
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 1.2e-91 340.9 522 40.0
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 3.4e-91 339.3 460 41.5
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 1.3e-90 337.4 447 44.7
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 3.7e-90 335.9 461 42.3
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 8.3e-90 334.7 451 43.7
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 1.1e-89 334.3 471 41.0
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 1.8e-89 333.6 563 37.7
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 4.1e-89 332.4 474 43.0
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 7.0e-89 331.6 431 45.9
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 7.0e-89 331.6 431 45.9
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 6.6e-87 325.1 366 53.8
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 1.9e-86 323.6 478 40.2
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 3.3e-86 322.8 411 44.8
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 1.2e-85 320.9 447 41.6
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 6.1e-85 318.5 469 40.9
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 6.1e-85 318.5 439 43.3
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 7.5e-83 311.6 501 38.5
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 2.9e-82 309.7 468 39.1
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 8.3e-82 308.1 389 45.5
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 8.3e-82 308.1 429 42.2
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 1.2e-80 304.3 462 40.3
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 4.6e-80 302.4 356 48.3
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 6.0e-80 302.0 466 40.8
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 8.0e-77 291.6 468 37.4
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.3e-76 290.0 472 37.5
Nitab4.5_0005894g0040 Nicotiana tabacum HOM05D001891 ORTHO05D005832 1.3e-74 284.3 350 45.7
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 1.1e-73 281.2 467 39.2
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 3.2e-73 279.6 426 39.7
CDE01G0775 Ceratophyllum demersum HOM05D001891 ORTHO05D005832 4.4e-67 259.2 439 35.8
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 6.4e-66 255.4 291 49.8
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 6.0e-64 248.8 403 38.5
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 8.6e-63 245.0 294 47.3
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 4.3e-62 242.7 323 44.9
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 1.1e-60 238.0 484 33.1
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 2.4e-60 236.9 269 48.3
Sc12g0002380 Simmondsia chinensis HOM05D001891 ORTHO05D005832 2.0e-59 233.8 286 44.4
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 2.6e-59 233.4 473 32.1
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 3.4e-59 233.0 250 50.4
Glyma.13G306800 Glycine max HOM05D001891 ORTHO05D005832 2.1e-56 223.8 310 41.6
AL3G35980 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.0e-55 221.5 287 43.6
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 1.3e-55 221.1 401 35.2
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 5.1e-55 219.2 232 51.3
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 5.1e-55 219.2 232 51.3
HPP92_009391 Vanilla planifolia HOM05D001891 ORTHO05D005832 1.1e-54 218.0 242 48.8
MBI18_g07895_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.5e-51 207.6 373 34.0
AUR62040522 Chenopodium quinoa HOM05D001891 ORTHO05D005832 1.1e-41 174.9 238 41.2
DCAR_012957 Daucus carota HOM05D001891 ORTHO05D005832 1.1e-41 174.9 254 39.0
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 7.1e-41 172.2 440 30.7
MCO06G294 Micromonas commoda HOM05D001891 ORTHO05D005832 3.7e-37 159.8 450 29.3
SMO167G0005 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 9.3e-33 145.2 313 34.5
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 1.6e-32 144.4 205 42.9
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 9.6e-30 135.2 155 49.0
Atru.chr8.690 Acer truncatum HOM05D001891 ORTHO05D005832 8.4e-26 122.1 138 50.7
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.4e-25 121.3 127 55.1
Cre01.g041100 Chlamydomonas reinhardtii HOM05D001891 ORTHO05D005832 7.9e-24 115.5 377 26.3
Psat1g072160 Pisum sativum HOM05D002713 ORTHO05D008299 2.5e-22 110.5 100 55.0
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 1.4e-17 94.7 72 66.7
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 1.9e-17 94.4 51 82.4
MBI18_g17390_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.6e-16 89.7 177 30.5
MBI18_g10800_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.8e-15 87.8 96 46.9
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 3.0e-15 87.0 140 37.9
arahy.Tifrunner.gnm1.ann1.6T7UPN Arachis hypogaea HOM05D003636 ORTHO05D005832 4.5e-11 73.2 68 51.5
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 1.9e-09 67.8 85 44.7
BolC1t04191H Brassica oleracea HOM05D001891 ORTHO05D005832 2.5e-09 67.4 46 65.2
C01p42360 Brassica napus HOM05D001891 ORTHO05D005832 4.2e-09 66.6 46 65.2
MBI18_g41692_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 4.2e-09 66.6 56 55.4
ATR0008G001 Amborella trichopoda HOM05D001891 ORTHO05D005832 3.6e-08 63.5 77 45.5
arahy.Tifrunner.gnm1.ann1.WYE7TV Arachis hypogaea HOM05D003444 ORTHO05D003963 8.8e-07 58.9 117 35.0
arahy.Tifrunner.gnm1.ann1.Q3H55W Arachis hypogaea HOM05D003444 ORTHO05D003963 1.5e-06 58.2 91 39.6
PRCOL_00001357 Prasinoderma coloniale HOM05D001891 ORTHO05D005832 2.0e-06 57.8 59 44.1
arahy.Tifrunner.gnm1.ann1.J663RV Arachis hypogaea HOM05D002828 ORTHO05D003457 7.4e-06 55.8 91 39.6


User provided reference genes

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