Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 1.4e-44 182.6 94 100.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 4.3e-33 144.4 92 80.4
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 9.6e-33 143.3 93 78.5
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 9.6e-33 143.3 92 79.3
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.3e-32 142.9 86 83.7
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.1e-32 142.1 89 79.8
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.8e-32 141.7 92 79.3
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 3.7e-32 141.4 93 76.3
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 3.7e-32 141.4 86 82.6
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 4.8e-32 141.0 92 78.3
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 4.8e-32 141.0 92 78.3
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 6.2e-32 140.6 92 78.3
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 1.4e-31 139.4 86 81.4
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 2.4e-31 138.7 86 81.4
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 2.4e-31 138.7 86 81.4
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 2.4e-31 138.7 90 77.8
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 3.1e-31 138.3 82 82.9
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 3.1e-31 138.3 94 77.7
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 3.1e-31 138.3 82 81.7
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 4.0e-31 137.9 85 81.2
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 5.3e-31 137.5 86 81.4
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.3e-31 137.5 92 78.3
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 5.3e-31 137.5 82 81.7
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 9.0e-31 136.7 90 76.7
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 1.5e-30 136.0 89 77.5
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 1.5e-30 136.0 86 80.2
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.6e-30 135.2 94 74.5
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 3.4e-30 134.8 86 77.9
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 3.4e-30 134.8 85 80.0
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 3.4e-30 134.8 89 78.7
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 4.5e-30 134.4 84 78.6
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 4.5e-30 134.4 88 76.1
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 4.5e-30 134.4 92 76.1
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 4.5e-30 134.4 87 75.9
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 5.8e-30 134.0 89 76.4
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 7.6e-30 133.7 86 77.9
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 7.6e-30 133.7 90 74.4
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 9.9e-30 133.3 91 73.6
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 1.3e-29 132.9 86 77.9
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.3e-29 132.9 96 72.9
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 1.7e-29 132.5 83 75.9
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 2.9e-29 131.7 88 72.7
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 2.9e-29 131.7 89 76.4
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 2.9e-29 131.7 91 74.7
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 3.8e-29 131.3 85 75.3
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 3.8e-29 131.3 89 73.0
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 3.8e-29 131.3 88 75.0
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 3.8e-29 131.3 90 73.3
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 4.9e-29 131.0 88 72.7
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 6.4e-29 130.6 88 72.7
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 6.4e-29 130.6 88 72.7
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 6.4e-29 130.6 94 74.5
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 6.4e-29 130.6 94 74.5
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 6.4e-29 130.6 94 73.4
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.1e-28 129.8 84 76.2
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.1e-28 129.8 89 73.0
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.9e-28 129.0 86 75.6
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.9e-28 129.0 83 78.3
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.5e-28 128.6 81 77.8
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 2.5e-28 128.6 82 76.8
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 2.5e-28 128.6 82 76.8
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 2.5e-28 128.6 82 76.8
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 3.2e-28 128.3 90 73.3
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 5.5e-28 127.5 81 81.5
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 5.5e-28 127.5 85 80.0
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 7.1e-28 127.1 90 71.1
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 7.1e-28 127.1 89 73.0
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 9.3e-28 126.7 92 71.7
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 9.3e-28 126.7 92 71.7
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 9.3e-28 126.7 80 78.8
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.2e-27 126.3 96 68.8
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.6e-27 125.9 86 73.3
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 2.1e-27 125.6 81 81.5
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.5e-27 124.8 85 71.8
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 4.6e-27 124.4 78 82.1
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 7.9e-27 123.6 87 71.3
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 7.9e-27 123.6 87 71.3
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 1.0e-26 123.2 80 75.0
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 3.0e-26 121.7 92 69.6
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 3.0e-26 121.7 80 75.0
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 3.0e-26 121.7 80 75.0
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 3.0e-26 121.7 80 75.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 3.9e-26 121.3 79 77.2
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 3.9e-26 121.3 78 75.6
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.9e-26 121.3 83 73.5
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 5.1e-26 120.9 79 77.2
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 6.7e-26 120.6 81 80.2
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.7e-26 120.6 81 76.5
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.7e-26 120.6 81 76.5
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.7e-26 120.6 81 76.5
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 6.7e-26 120.6 81 77.8
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 8.7e-26 120.2 80 73.8
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 1.9e-25 119.0 80 72.5
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.5e-25 118.6 80 72.5
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 2.5e-25 118.6 86 70.9
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 3.3e-25 118.2 85 70.6
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 3.3e-25 118.2 80 72.5
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 3.3e-25 118.2 80 73.8
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.3e-25 118.2 80 70.0
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 3.3e-25 118.2 80 72.5
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 5.6e-25 117.5 85 70.6
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 7.4e-25 117.1 80 71.2
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 9.6e-25 116.7 86 67.4
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.3e-24 116.3 73 83.6
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.3e-24 116.3 87 70.1
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 1.6e-24 115.9 80 68.8
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 1.6e-24 115.9 80 68.8
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 1.6e-24 115.9 80 68.8
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 1.6e-24 115.9 80 68.8
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 1.6e-24 115.9 94 69.1
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 1.6e-24 115.9 87 64.4
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 2.1e-24 115.5 81 74.1
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 3.7e-24 114.8 81 69.1
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 4.8e-24 114.4 80 68.8
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 4.8e-24 114.4 80 68.8
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 4.8e-24 114.4 80 68.8
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 4.8e-24 114.4 75 77.3
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.1e-23 113.2 87 69.0
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.1e-23 113.2 87 69.0
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 1.8e-23 112.5 74 78.4
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 2.4e-23 112.1 81 71.6
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 2.4e-23 112.1 74 78.4
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 3.1e-23 111.7 89 68.5
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 9.0e-23 110.2 79 68.4
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 9.0e-23 110.2 79 68.4
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 9.0e-23 110.2 79 68.4
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 2.0e-22 109.0 81 72.8
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 8.4e-21 103.6 75 70.7
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 4.2e-20 101.3 86 59.3
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 5.5e-20 100.9 80 70.0
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 7.1e-20 100.5 72 72.2
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.3e-18 96.3 83 62.7
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 1.3e-18 96.3 78 64.1
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 5.1e-18 94.4 78 61.5
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 5.7e-17 90.9 91 54.9
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.7e-16 88.2 93 54.8
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 2.4e-15 85.5 54 74.1
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 9.0e-15 83.6 56 69.6
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.2e-13 79.0 48 75.0
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 3.8e-13 78.2 80 56.2
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.8e-13 78.2 52 75.0
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 3.8e-13 78.2 52 75.0
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 1.1e-12 76.6 79 50.6
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 1.2e-11 73.2 51 70.6
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 2.8e-08 62.0 40 75.0


User provided reference genes

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