Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01342 Eucalyptus grandis HOM05D002903 ORTHO05D003066 9.8e-173 610.1 331 100.0
Eucgr.J01339 Eucalyptus grandis HOM05D002903 ORTHO05D003066 1.2e-93 347.4 290 73.4
Dinv24393 Davidia involucrata HOM05D002903 ORTHO05D003066 4.3e-27 126.3 314 33.4
PGR102G0277 Punica granatum HOM05D002903 ORTHO05D003066 4.3e-27 126.3 268 42.9
Gohir.D04G032100 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.9e-22 110.9 288 33.0
Gorai.012G036500 Gossypium raimondii HOM05D002903 ORTHO05D003066 2.4e-22 110.5 288 33.0
TWI79G0835 Tripterygium wilfordii HOM05D000001 ORTHO05D010162 3.5e-21 106.7 308 34.1
Gohir.A05G383200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 6.0e-21 105.9 289 32.2
FAN19G0913 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.7e-20 104.4 268 32.1
FvH4_1g24530 Fragaria vesca HOM05D002903 ORTHO05D003066 3.0e-20 103.6 268 32.1
RcHm_v2.0_Chr2g0121941 Rosa chinensis HOM05D002903 ORTHO05D003066 3.0e-20 103.6 270 31.5
FAN26G0773 Fragaria x ananassa HOM05D002903 ORTHO05D003066 5.6e-19 99.4 268 31.0
FAN28G2835 Fragaria x ananassa HOM05D002903 ORTHO05D003066 5.6e-19 99.4 268 30.6
FAN23G0840 Fragaria x ananassa HOM05D002903 ORTHO05D003066 1.2e-18 98.2 268 30.6
Duzib187G0480 Durio zibethinus HOM05D002903 ORTHO05D003066 1.6e-18 97.8 295 34.2
COL.COLO4_35772 Corchorus olitorius HOM05D002903 ORTHO05D003066 2.1e-18 97.4 305 33.1
Thecc.01G134700 Theobroma cacao HOM05D002903 ORTHO05D003066 6.2e-18 95.9 264 32.2
QL10p043057 Quercus lobata HOM05D002903 ORTHO05D003066 1.1e-17 95.1 216 36.6
Dinv19537 Davidia involucrata HOM05D002903 ORTHO05D003066 2.0e-16 90.9 303 29.0
GSVIVG01022345001 Vitis vinifera HOM05D002903 ORTHO05D003066 7.6e-16 89.0 206 33.5
TAR625G1102 Trochodendron aralioides HOM05D002903 ORTHO05D003066 9.9e-16 88.6 241 31.5
CiPaw.03G119900 Carya illinoinensis HOM05D002903 ORTHO05D003066 2.2e-15 87.4 226 35.0
Potri.007G104500 Populus trichocarpa HOM05D002903 ORTHO05D003066 6.4e-15 85.9 282 28.7
Haze_25272 Corylus avellana HOM05D002903 ORTHO05D003066 1.1e-14 85.1 278 32.4
Rhsim08G0001600 Rhododendron simsii HOM05D002903 ORTHO05D003066 1.9e-14 84.3 212 33.5
Prupe.4G272900 Prunus persica HOM05D002903 ORTHO05D003066 3.2e-14 83.6 270 29.6
Actinidia06611 Actinidia chinensis HOM05D002903 ORTHO05D003066 4.2e-14 83.2 153 37.3
Haze_25271 Corylus avellana HOM05D002903 ORTHO05D003066 4.2e-14 83.2 278 32.0
Haze_25273 Corylus avellana HOM05D002903 ORTHO05D003066 4.2e-14 83.2 278 32.0
Actinidia12224 Actinidia chinensis HOM05D002903 ORTHO05D003066 5.4e-14 82.8 205 35.1
TWI75G0819 Tripterygium wilfordii HOM05D002903 ORTHO05D003066 7.1e-14 82.4 127 40.9
Migut.H00687 Erythranthe guttata HOM05D002903 ORTHO05D003066 9.3e-14 82.0 180 32.8
Sabra05G0053700 Salix brachista HOM05D002903 ORTHO05D003066 1.2e-13 81.6 221 29.4
Manes.12G157200 Manihot esculenta HOM05D002903 ORTHO05D003066 2.7e-13 80.5 304 29.6
Hma1.2p1_0539F.1_g174540 Hydrangea macrophylla HOM05D002903 ORTHO05D003066 3.5e-13 80.1 289 29.1
Sabra07G0085500 Salix brachista HOM05D002903 ORTHO05D003066 1.0e-12 78.6 289 28.7
Ciclev10003587m.g Citrus clementina HOM05D002903 ORTHO05D003066 1.3e-12 78.2 158 38.0
Actinidia20071 Actinidia chinensis HOM05D002903 ORTHO05D003066 5.1e-12 76.3 257 28.8
DCAR_001203 Daucus carota HOM05D002903 ORTHO05D003066 5.1e-12 76.3 235 27.2
Cfa002912 Carpinus fangiana HOM05D002903 ORTHO05D003066 8.7e-12 75.5 284 29.2
Oeu058296.1 Olea europaea HOM05D002903 ORTHO05D003066 8.7e-12 75.5 254 29.1
Thecc.06G085300 Theobroma cacao HOM05D002903 ORTHO05D003066 1.5e-11 74.7 138 37.7
Thecc.06G085900 Theobroma cacao HOM05D002903 ORTHO05D003066 1.5e-11 74.7 138 37.7
VMungo0647G0886 Vigna mungo HOM05D002903 ORTHO05D003066 1.9e-11 74.3 297 32.3
Aqoxy5G02305 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 3.3e-11 73.6 202 30.2
CiPaw.04G081400 Carya illinoinensis HOM05D002903 ORTHO05D003066 3.3e-11 73.6 295 27.5
Nitab4.5_0000496g0210 Nicotiana tabacum HOM05D002903 ORTHO05D003066 3.3e-11 73.6 188 31.4
Potri.005G064700 Populus trichocarpa HOM05D002903 ORTHO05D003066 4.3e-11 73.2 275 26.9
Atru.chr4.939 Acer truncatum HOM05D002903 ORTHO05D003066 9.6e-11 72.0 265 31.3
FvH4_2g15290 Fragaria vesca HOM05D002903 ORTHO05D003066 9.6e-11 72.0 127 35.4
FAN20G1459 Fragaria x ananassa HOM05D002903 ORTHO05D003066 9.6e-11 72.0 138 34.1
FAN24G3523 Fragaria x ananassa HOM05D002903 ORTHO05D003066 9.6e-11 72.0 127 35.4
Glyma.14G158800 Glycine max HOM05D002903 ORTHO05D003066 1.6e-10 71.2 202 28.2
Nn5g28499 Nelumbo nucifera HOM05D002903 ORTHO05D003066 1.6e-10 71.2 236 30.1
Thecc.06G085500 Theobroma cacao HOM05D002903 ORTHO05D003066 1.6e-10 71.2 124 37.1
Lj1g0027406 Lotus japonicus HOM05D002903 ORTHO05D003066 3.6e-10 70.1 227 27.8
FAN27G1654 Fragaria x ananassa HOM05D002903 ORTHO05D003066 4.8e-10 69.7 127 34.6
FAN15G2216 Fragaria x ananassa HOM05D002903 ORTHO05D003066 6.2e-10 69.3 137 33.6
TAR376G0422 Trochodendron aralioides HOM05D002903 ORTHO05D003066 6.2e-10 69.3 223 30.5
Lalb_Chr08g0240931 Lupinus albus HOM05D002903 ORTHO05D003066 8.1e-10 68.9 126 35.7
Phvul.009G155800 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 8.1e-10 68.9 266 26.7
Lj1g0005492 Lotus japonicus HOM05D002903 ORTHO05D003066 1.1e-09 68.6 242 31.8
Medtr3g096450 Medicago truncatula HOM05D002903 ORTHO05D003066 1.1e-09 68.6 244 31.6
Cpa.g.sc26.66 Carica papaya HOM05D002903 ORTHO05D003066 2.4e-09 67.4 144 32.6
Cpa.g.sc42.173 Carica papaya HOM05D002903 ORTHO05D003066 2.4e-09 67.4 203 31.0
Nn1g06302 Nelumbo nucifera HOM05D002903 ORTHO05D003066 2.4e-09 67.4 143 34.3
Peaxi162Scf00353g00026 Petunia axillaris HOM05D002903 ORTHO05D003066 3.1e-09 67.0 251 29.1
CiPaw.15G024600 Carya illinoinensis HOM05D002903 ORTHO05D003066 4.0e-09 66.6 144 33.3
Psat6g040160 Pisum sativum HOM05D002903 ORTHO05D003066 4.0e-09 66.6 293 29.7
RcHm_v2.0_Chr6g0278041 Rosa chinensis HOM05D002903 ORTHO05D003066 4.0e-09 66.6 185 28.1
TPR.G30561 Trifolium pratense HOM05D002903 ORTHO05D003066 4.0e-09 66.6 203 29.6
Manes.18G084700 Manihot esculenta HOM05D002903 ORTHO05D003066 6.9e-09 65.9 138 31.2
Actinidia03429 Actinidia chinensis HOM05D002903 ORTHO05D003066 9.0e-09 65.5 221 29.9
CSS0044741 Camellia sinensis var. sinensis HOM05D002903 ORTHO05D003066 9.0e-09 65.5 268 28.7
MELO3C008433.2 Cucumis melo HOM05D002903 ORTHO05D003066 9.0e-09 65.5 136 33.1
arahy.Tifrunner.gnm1.ann1.I47HGM Arachis hypogaea HOM05D002903 ORTHO05D003066 1.2e-08 65.1 98 37.8
EL10Ac1g01404 Beta vulgaris HOM05D002903 ORTHO05D003066 1.2e-08 65.1 53 58.5
Cc10_g13350 Coffea canephora HOM05D002903 ORTHO05D003066 1.2e-08 65.1 152 31.6
Glyma.06G154700 Glycine max HOM05D002903 ORTHO05D003066 1.2e-08 65.1 204 30.4
Glyma.13G036100 Glycine max HOM05D002903 ORTHO05D003066 1.2e-08 65.1 157 31.2
Manes.02G172300 Manihot esculenta HOM05D002903 ORTHO05D003066 1.2e-08 65.1 140 31.4
Phvul.001G065100 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 1.2e-08 65.1 297 29.6
CSS0044801 Camellia sinensis var. sinensis HOM05D002903 ORTHO05D003066 1.5e-08 64.7 143 31.5
CsaV3_6G031200 Cucumis sativus L. HOM05D002903 ORTHO05D003066 1.5e-08 64.7 120 35.0
Dinv25773 Davidia involucrata HOM05D002903 ORTHO05D003066 2.0e-08 64.3 197 26.9
Duzib041G0628 Durio zibethinus HOM05D002903 ORTHO05D003066 2.0e-08 64.3 224 25.4
Migut.N03253 Erythranthe guttata HOM05D002903 ORTHO05D003066 2.0e-08 64.3 53 60.4
Eucgr.F02770 Eucalyptus grandis HOM05D002903 ORTHO05D003066 2.0e-08 64.3 186 31.2
Lalb_Chr10g0101441 Lupinus albus HOM05D002903 ORTHO05D003066 2.0e-08 64.3 225 28.4
MBI03_g20844_MAGBIO Magnolia biondii HOM05D002903 ORTHO05D003066 2.0e-08 64.3 197 31.5
Medtr1g029550 Medicago truncatula HOM05D002903 ORTHO05D003066 2.0e-08 64.3 227 28.6
arahy.Tifrunner.gnm1.ann1.TSX9B2 Arachis hypogaea HOM05D002903 ORTHO05D003066 2.6e-08 63.9 186 33.9
ClCG08G006250 Citrullus lanatus HOM05D002903 ORTHO05D003066 2.6e-08 63.9 116 36.2
Hund26764 Selenicereus undatus HOM05D002903 ORTHO05D003066 2.6e-08 63.9 53 60.4
Sc26g0002820 Simmondsia chinensis HOM05D002903 ORTHO05D003066 2.6e-08 63.9 130 36.2
Sopen05g034770 Solanum pennellii HOM05D002903 ORTHO05D003066 2.6e-08 63.9 248 27.8
Sopen08g029160 Solanum pennellii HOM05D002903 ORTHO05D003066 2.6e-08 63.9 89 43.8
SGA_v2.0_scaffold20G09019 Striga asiatica HOM05D002903 ORTHO05D003066 2.6e-08 63.9 248 26.6
Peaxi162Scf00505g00053 Petunia axillaris HOM05D002903 ORTHO05D003066 3.4e-08 63.5 52 59.6
Thecc.08G137400 Theobroma cacao HOM05D002903 ORTHO05D003066 3.4e-08 63.5 160 30.0
Prupe.8G011500 Prunus persica HOM05D002903 ORTHO05D003066 4.5e-08 63.2 135 51.1
QL09p029695 Quercus lobata HOM05D002903 ORTHO05D003066 4.5e-08 63.2 128 34.4
VMungo1309G1474 Vigna mungo HOM05D002903 ORTHO05D003066 4.5e-08 63.2 250 27.2
CiPaw.16G019600 Carya illinoinensis HOM05D002903 ORTHO05D003066 5.8e-08 62.8 49 61.2
Nitab4.5_0008281g0010 Nicotiana tabacum HOM05D002903 ORTHO05D003066 5.8e-08 62.8 193 29.0
COL.COLO4_38160 Corchorus olitorius HOM05D002903 ORTHO05D003066 7.6e-08 62.4 217 26.7
AUR62007679 Chenopodium quinoa HOM05D002903 ORTHO05D003066 9.9e-08 62.0 51 58.8
Solyc05g056380.3 Solanum lycopersicum HOM05D002903 ORTHO05D003066 9.9e-08 62.0 250 28.0
MSTRG.1394 Avicennia marina HOM05D002903 ORTHO05D003066 1.3e-07 61.6 92 42.4
MD10G1007900 Malus domestica HOM05D002903 ORTHO05D003066 1.3e-07 61.6 127 37.8
SalBow6G1573 Salvia bowleyana HOM05D002903 ORTHO05D003066 1.3e-07 61.6 84 44.0
PGSC0003DMG400012217 Solanum tuberosum HOM05D002903 ORTHO05D003066 1.3e-07 61.6 89 43.8
Gohir.D05G241400 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.7e-07 61.2 223 28.7
Gorai.009G250800 Gossypium raimondii HOM05D002903 ORTHO05D003066 1.7e-07 61.2 223 28.7
Hund17367 Selenicereus undatus HOM05D002903 ORTHO05D003066 1.7e-07 61.2 52 51.9
Solyc08g080860.4 Solanum lycopersicum HOM05D002903 ORTHO05D003066 2.2e-07 60.8 89 43.8
Atru.chr13.1637 Acer truncatum HOM05D002903 ORTHO05D003066 2.9e-07 60.5 141 31.9
arahy.Tifrunner.gnm1.ann1.Y173KB Arachis hypogaea HOM05D002903 ORTHO05D003066 2.9e-07 60.5 79 43.0
Cfa018400 Carpinus fangiana HOM05D002903 ORTHO05D003066 2.9e-07 60.5 44 59.1
Gohir.A02G112000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 2.9e-07 60.5 145 31.7
Sed0005775 Sechium edule HOM05D002903 ORTHO05D003066 2.9e-07 60.5 206 32.5
MSTRG.25346 Avicennia marina HOM05D002903 ORTHO05D003066 3.8e-07 60.1 126 35.7
Gohir.A05G240200 Gossypium hirsutum HOM05D002903 ORTHO05D003066 3.8e-07 60.1 223 28.7
PGR044G0841 Punica granatum HOM05D002903 ORTHO05D003066 3.8e-07 60.1 213 28.2
Aqoxy1G01928 Aquilegia oxysepala HOM05D002903 ORTHO05D003066 4.9e-07 59.7 43 60.5
Ca_16630_v3 Cicer arietinum L. HOM05D002903 ORTHO05D003066 4.9e-07 59.7 144 31.2
Psat5g083880 Pisum sativum HOM05D002903 ORTHO05D003066 4.9e-07 59.7 42 64.3
arahy.Tifrunner.gnm1.ann1.4FGN3C Arachis hypogaea HOM05D002903 ORTHO05D003066 6.4e-07 59.3 183 33.9
Haze_17666 Corylus avellana HOM05D002903 ORTHO05D003066 6.4e-07 59.3 44 56.8
Gohir.A02G069300 Gossypium hirsutum HOM05D002903 ORTHO05D003066 6.4e-07 59.3 182 31.3
Gorai.013G109100 Gossypium raimondii HOM05D002903 ORTHO05D003066 6.4e-07 59.3 145 31.7
Lj1g0005014 Lotus japonicus HOM05D002903 ORTHO05D003066 6.4e-07 59.3 40 70.0
MD05G1009200 Malus domestica HOM05D002903 ORTHO05D003066 8.4e-07 58.9 147 29.9
Sed0027661 Sechium edule HOM05D002903 ORTHO05D003066 8.4e-07 58.9 94 37.2
Gohir.D03G062500 Gossypium hirsutum HOM05D002903 ORTHO05D003066 1.1e-06 58.5 145 31.0
Lj7P356T43 Lonicera japonica HOM05D002903 ORTHO05D003066 1.1e-06 58.5 62 50.0
Potri.005G185200 Populus trichocarpa HOM05D002903 ORTHO05D003066 1.1e-06 58.5 55 47.3
Medtr3g088815 Medicago truncatula HOM05D002903 ORTHO05D003066 1.9e-06 57.8 42 61.9
Dinv41151 Davidia involucrata HOM05D002903 ORTHO05D003066 2.4e-06 57.4 227 28.6
Glyma.04G243500 Glycine max HOM05D002903 ORTHO05D003066 2.4e-06 57.4 123 30.1
Lsat_1_v5_gn_1_9061 Lactuca sativa HOM05D002903 ORTHO05D003066 2.4e-06 57.4 65 49.2
MBI06_g27454_MAGBIO Magnolia biondii HOM05D002903 ORTHO05D003066 2.4e-06 57.4 141 32.6
Oeu045975.1 Olea europaea HOM05D002903 ORTHO05D003066 2.4e-06 57.4 77 40.3
Oeu047153.1 Olea europaea HOM05D002903 ORTHO05D003066 2.4e-06 57.4 159 28.3
MSTRG.24179 Avicennia marina HOM05D002903 ORTHO05D003066 3.2e-06 57.0 62 46.8
Gohir.D02G076000 Gossypium hirsutum HOM05D002903 ORTHO05D003066 3.2e-06 57.0 209 28.2
Gorai.005G085300 Gossypium raimondii HOM05D002903 ORTHO05D003066 3.2e-06 57.0 209 28.2
ClCG08G003270 Citrullus lanatus HOM05D002903 ORTHO05D003066 4.2e-06 56.6 52 48.1
TPR.G6299 Trifolium pratense HOM05D002903 ORTHO05D003066 4.2e-06 56.6 42 59.5
BraA06t24841Z Brassica rapa HOM05D002903 ORTHO05D003066 5.4e-06 56.2 209 27.8
Duzib093G1863 Durio zibethinus HOM05D002903 ORTHO05D003066 5.4e-06 56.2 144 29.9
Glyma.06G119800 Glycine max HOM05D002903 ORTHO05D003066 5.4e-06 56.2 45 55.6
Phvul.009G132400 Phaseolus vulgaris HOM05D002903 ORTHO05D003066 5.4e-06 56.2 41 61.0
THA.LOC104813698 Tarenaya hassleriana HOM05D002903 ORTHO05D003066 5.4e-06 56.2 156 31.4
VMungo1309G2413 Vigna mungo HOM05D002903 ORTHO05D003066 5.4e-06 56.2 41 61.0
BcaC05g26046 Brassica carinata HOM05D002903 ORTHO05D003066 7.1e-06 55.8 204 28.9
SalBow7G1710 Salvia bowleyana HOM05D002903 ORTHO05D003066 7.1e-06 55.8 42 61.9
Lalb_Chr08g0238241 Lupinus albus HOM05D002903 ORTHO05D003066 9.3e-06 55.5 188 31.9
PGR042G1875 Punica granatum HOM05D002903 ORTHO05D003066 9.3e-06 55.5 125 30.4
Sabra05G0141500 Salix brachista HOM05D002903 ORTHO05D003066 9.3e-06 55.5 209 27.3


User provided reference genes

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