Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.7e-215 750.4 367 100.0
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.7e-215 750.4 367 100.0
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 8.8e-215 750.0 367 99.7
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.1e-200 702.2 367 92.6
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.9e-177 625.9 367 81.7
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 4.9e-173 611.3 364 79.4
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 6.4e-173 610.9 370 80.0
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.1e-172 610.1 367 79.6
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 2.4e-172 609.0 363 79.1
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 2.4e-172 609.0 363 79.1
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 5.4e-172 607.8 365 79.2
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 5.4e-172 607.8 366 79.8
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.6e-171 606.3 367 77.9
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 7.8e-171 604.0 367 78.5
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.7e-170 602.8 367 77.9
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.3e-170 602.4 367 77.7
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.1e-169 600.1 367 77.9
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.5e-169 599.7 365 78.1
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.5e-169 599.7 369 77.5
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.9e-169 599.4 373 78.3
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 2.5e-169 599.0 365 77.5
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 5.6e-169 597.8 365 77.5
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 3.6e-168 595.1 367 77.4
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 6.2e-168 594.3 365 78.4
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.2e-168 594.3 365 77.3
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.0e-167 593.6 365 77.0
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.8e-167 592.8 364 76.9
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.8e-167 592.8 366 77.3
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.3e-167 592.4 366 77.3
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 3.1e-167 592.0 366 77.0
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 3.1e-167 592.0 363 77.1
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 4.0e-167 591.7 365 77.3
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 6.8e-167 590.9 363 77.4
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 8.9e-167 590.5 367 77.4
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.2e-166 590.1 365 77.3
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.5e-166 589.7 367 76.0
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.6e-166 589.0 390 73.3
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 4.4e-166 588.2 365 76.7
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.4e-166 588.2 365 76.7
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 7.5e-166 587.4 363 77.7
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.3e-165 586.6 365 76.4
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 2.2e-165 585.9 366 75.4
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.9e-165 585.5 365 76.4
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 2.9e-165 585.5 369 75.1
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 2.9e-165 585.5 365 76.2
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 3.7e-165 585.1 363 76.3
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.4e-164 583.2 364 75.5
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 1.9e-164 582.8 363 76.0
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 2.4e-164 582.4 366 75.7
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 3.2e-164 582.0 366 75.4
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 4.1e-164 581.6 367 77.4
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 4.1e-164 581.6 367 77.4
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 4.1e-164 581.6 365 75.9
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 4.1e-164 581.6 367 75.5
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 5.4e-164 581.3 363 76.6
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 5.4e-164 581.3 361 76.5
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 9.2e-164 580.5 363 76.6
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 2.0e-163 579.3 367 77.1
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 3.5e-163 578.6 369 74.5
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 4.6e-163 578.2 363 75.5
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 4.6e-163 578.2 365 75.9
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 6.0e-163 577.8 367 76.0
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 6.0e-163 577.8 366 74.0
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 6.0e-163 577.8 360 76.1
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 7.8e-163 577.4 367 76.6
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 7.8e-163 577.4 364 76.1
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.0e-162 577.0 363 74.4
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.3e-162 576.6 367 75.7
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 2.3e-162 575.9 363 75.8
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.0e-162 575.5 362 76.5
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.6e-162 574.3 365 74.8
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.5e-161 573.2 363 76.0
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.9e-161 572.8 367 75.7
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 1.9e-161 572.8 372 74.7
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.5e-161 572.4 367 75.7
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 3.3e-161 572.0 367 74.4
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 4.3e-161 571.6 363 75.2
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 5.6e-161 571.2 367 76.3
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.2e-160 570.1 363 74.7
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 2.1e-160 569.3 367 76.3
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.6e-160 568.5 360 75.6
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 4.7e-160 568.2 363 74.9
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 8.1e-160 567.4 361 74.5
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 4.0e-159 565.1 362 74.6
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 6.8e-159 564.3 367 73.8
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.4e-158 562.0 393 69.7
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 4.4e-158 561.6 417 67.9
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 5.8e-158 561.2 367 73.8
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 7.5e-158 560.8 363 74.1
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 9.2e-156 553.9 367 70.3
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 1.2e-155 553.5 366 71.9
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.0e-154 550.4 441 64.4
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.3e-154 550.1 457 61.3
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 6.6e-154 547.7 364 70.1
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 1.1e-153 547.0 358 72.1
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 7.3e-153 544.3 361 70.1
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 1.1e-151 540.4 460 60.0
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.3e-149 533.5 357 71.1
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 6.0e-147 524.6 335 74.6
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.6e-146 521.2 361 69.0
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 2.5e-145 519.2 361 67.9
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 5.6e-145 518.1 364 67.6
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 1.6e-144 516.5 364 66.5
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.6e-144 516.5 361 66.8
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.8e-144 515.8 371 66.8
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.4e-143 513.5 389 66.8
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.9e-143 511.1 359 66.6
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 4.6e-139 498.4 363 62.5
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 2.3e-138 496.1 364 64.3
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 8.7e-138 494.2 358 64.8
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 9.6e-137 490.7 519 51.3
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 2.1e-136 489.6 274 83.9
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 4.0e-135 485.3 363 63.6
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 1.0e-130 470.7 360 60.6
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 9.3e-124 447.6 255 81.6
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.3e-120 437.2 348 64.4
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 2.8e-120 436.0 271 75.6
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.3e-119 431.8 385 55.6
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 4.5e-110 402.1 278 69.8
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 4.3e-105 385.6 350 55.4
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.0e-98 364.4 352 51.1
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.8e-96 356.3 302 58.6
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 3.2e-92 342.8 380 46.8
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 8.8e-90 334.7 182 92.3
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 2.6e-81 306.6 271 57.6
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.1e-79 301.2 204 71.6
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 5.3e-79 298.9 228 62.7
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 4.2e-76 289.3 164 81.7
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.4e-74 284.3 161 81.4
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 5.2e-74 282.3 179 73.2
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 4.7e-67 259.2 187 67.4
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.4e-63 245.7 356 42.7
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 2.3e-53 213.8 179 55.3
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.5e-49 201.1 112 81.2
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 7.0e-47 192.2 170 57.6
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 2.0e-41 174.1 106 75.5
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 1.1e-36 158.3 107 71.0
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 8.1e-35 152.1 90 78.9
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 3.4e-25 120.2 92 66.3
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 4.4e-25 119.8 177 40.7
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 3.6e-19 100.1 62 71.0
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 2.4e-18 97.4 77 61.0
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 5.3e-18 96.3 57 77.2
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 4.5e-17 93.2 228 28.1
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 5.8e-17 92.8 55 72.7
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 6.4e-16 89.4 48 81.2
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 1.6e-14 84.7 66 60.6
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 2.7e-14 84.0 83 54.2
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.9e-07 61.2 74 41.9
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 7.9e-06 55.8 32 78.1


User provided reference genes

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