Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.J00964 Eucalyptus grandis HOM05D000476 ORTHO05D029332 4.4e-77 291.2 145 100.0
TWI31G0618 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 1.4e-38 163.3 145 64.1
TWI75G0421 Tripterygium wilfordii HOM05D000476 ORTHO05D005719 1.4e-38 163.3 146 64.4
vmacro02286 Vaccinium macrocarpon HOM05D000476 ORTHO05D005719 1.4e-38 163.3 151 62.9
CiPaw.05G084600 Carya illinoinensis HOM05D000476 ORTHO05D005719 1.8e-38 162.9 145 64.1
Haze_02112 Corylus avellana HOM05D000476 ORTHO05D005719 2.4e-38 162.5 144 63.2
QL11p051500 Quercus lobata HOM05D000476 ORTHO05D005719 2.6e-37 159.1 150 67.3
Rhsim11G0193200 Rhododendron simsii HOM05D000476 ORTHO05D005719 3.4e-37 158.7 151 62.3
Ciclev10030360m.g Citrus clementina HOM05D000476 ORTHO05D005719 5.8e-37 157.9 145 63.4
Duzib248G0030 Durio zibethinus HOM05D000476 ORTHO05D005719 5.8e-37 157.9 149 59.7
Cfa005281 Carpinus fangiana HOM05D000476 ORTHO05D005719 7.6e-37 157.5 144 61.8
Thecc.02G056200 Theobroma cacao HOM05D000476 ORTHO05D005719 1.7e-36 156.4 149 61.7
PSO170G5898 Papaver somniferum HOM05D000476 ORTHO05D005719 8.4e-36 154.1 149 58.4
Thecc.02G056700 Theobroma cacao HOM05D000476 ORTHO05D029332 8.4e-36 154.1 149 61.1
Actinidia18045 Actinidia chinensis HOM05D000476 ORTHO05D005719 1.9e-35 152.9 145 60.7
Actinidia20522 Actinidia chinensis HOM05D000476 ORTHO05D005719 3.2e-35 152.1 145 60.7
Potri.004G177200 Populus trichocarpa HOM05D000476 ORTHO05D005719 3.2e-35 152.1 147 61.2
PSO210G5945 Papaver somniferum HOM05D000476 ORTHO05D005719 2.1e-34 149.4 146 57.5
Sabra04G0119100 Salix brachista HOM05D000476 ORTHO05D005719 1.3e-33 146.7 147 59.2
Sed0002256 Sechium edule HOM05D000476 ORTHO05D005719 1.3e-33 146.7 151 62.3
Nn5g30832 Nelumbo nucifera HOM05D000476 ORTHO05D005719 1.8e-33 146.4 136 61.8
Aqoxy5G01114 Aquilegia oxysepala HOM05D000476 ORTHO05D005719 2.3e-33 146.0 144 59.0
Dinv41922 Davidia involucrata HOM05D000476 ORTHO05D005719 3.0e-33 145.6 144 56.9
CsaV3_2G016220 Cucumis sativus L. HOM05D000476 ORTHO05D005719 3.9e-33 145.2 152 59.2
Lsat_1_v5_gn_4_71841 Lactuca sativa HOM05D000476 ORTHO05D005719 6.7e-33 144.4 141 59.6
Potri.009G137500 Populus trichocarpa HOM05D000476 ORTHO05D005719 8.7e-33 144.1 137 61.3
MELO3C020830.2 Cucumis melo HOM05D000476 ORTHO05D005719 1.1e-32 143.7 152 59.2
ClCG02G012060 Citrullus lanatus HOM05D000476 ORTHO05D005719 4.3e-32 141.7 151 62.3
Hma1.2p1_0163F.1_g072630 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 4.3e-32 141.7 154 56.5
TAR381G1494 Trochodendron aralioides HOM05D000476 ORTHO05D005719 4.3e-32 141.7 145 57.2
Sed0017619 Sechium edule HOM05D000476 ORTHO05D005719 5.6e-32 141.4 144 60.4
Sabra09G0106700 Salix brachista HOM05D000476 ORTHO05D005719 9.6e-32 140.6 142 59.9
Ah.01g008190 Amaranthus hybridus HOM05D000476 ORTHO05D005719 1.3e-31 140.2 160 54.4
CSS0012841 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D005719 1.6e-31 139.8 144 56.2
MD10G1127200 Malus domestica HOM05D000476 ORTHO05D005719 2.8e-31 139.0 147 55.8
Cc09_g10250 Coffea canephora HOM05D000476 ORTHO05D005719 3.7e-31 138.7 146 56.8
Nn6g31926 Nelumbo nucifera HOM05D000476 ORTHO05D005719 3.7e-31 138.7 141 56.0
Psat6g232560 Pisum sativum HOM05D000476 ORTHO05D005719 3.7e-31 138.7 159 53.5
MSTRG.16926 Avicennia marina HOM05D000476 ORTHO05D005719 3.1e-30 135.6 149 55.0
Cpa.g.sc20.106 Carica papaya HOM05D000476 ORTHO05D005719 3.1e-30 135.6 163 51.5
Glyma.20G106700 Glycine max HOM05D000476 ORTHO05D005719 4.0e-30 135.2 151 55.0
Medtr1g112850 Medicago truncatula HOM05D000476 ORTHO05D005719 6.9e-30 134.4 153 55.6
CANSAT25G2378 Cannabis sativa HOM05D000476 ORTHO05D005719 1.2e-29 133.7 147 59.2
Manes.04G071400 Manihot esculenta HOM05D000476 ORTHO05D005719 1.5e-29 133.3 157 53.5
THA.LOC104804321 Tarenaya hassleriana HOM05D000476 ORTHO05D005719 1.5e-29 133.3 153 57.5
Lalb_Chr21g0307031 Lupinus albus HOM05D000476 ORTHO05D005719 2.6e-29 132.5 150 56.0
Prupe.8G168100 Prunus persica HOM05D000476 ORTHO05D005719 2.6e-29 132.5 158 51.9
FvH4_2g15580 Fragaria vesca HOM05D000476 ORTHO05D005719 3.4e-29 132.1 144 54.2
MD05G1124400 Malus domestica HOM05D000476 ORTHO05D005719 3.4e-29 132.1 150 52.7
Glyma.10G283000 Glycine max HOM05D000476 ORTHO05D005719 4.5e-29 131.7 153 53.6
Lj9A397G33 Lonicera japonica HOM05D000476 ORTHO05D005719 7.6e-29 131.0 154 52.6
Lj9C400T3 Lonicera japonica HOM05D000476 ORTHO05D005719 7.6e-29 131.0 154 52.6
AUR62013007 Chenopodium quinoa HOM05D000476 ORTHO05D005719 9.9e-29 130.6 170 48.2
Oeu029648.1 Olea europaea HOM05D000476 ORTHO05D005719 9.9e-29 130.6 149 53.0
FAN24G1070 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.3e-28 130.2 144 53.5
Gohir.D01G161200 Gossypium hirsutum HOM05D000476 ORTHO05D005719 1.3e-28 130.2 138 55.1
Gorai.002G199800 Gossypium raimondii HOM05D000476 ORTHO05D005719 1.3e-28 130.2 138 55.1
Phvul.007G018200 Phaseolus vulgaris HOM05D000476 ORTHO05D005719 1.3e-28 130.2 146 55.5
Gohir.A01G170100 Gossypium hirsutum HOM05D000476 ORTHO05D005719 1.7e-28 129.8 138 54.3
Manes.02G109900 Manihot esculenta HOM05D000476 ORTHO05D005719 2.2e-28 129.4 141 53.2
RcHm_v2.0_Chr6g0278761 Rosa chinensis HOM05D000476 ORTHO05D005719 2.2e-28 129.4 145 53.8
FAN15G2981 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.1e-27 127.1 144 51.4
Sopen01g053780 Solanum pennellii HOM05D000476 ORTHO05D005719 3.2e-27 125.6 150 50.0
Dinv40142 Davidia involucrata HOM05D000476 ORTHO05D005719 5.5e-27 124.8 149 53.7
TPR.G2472 Trifolium pratense HOM05D000476 ORTHO05D005719 5.5e-27 124.8 146 52.1
FAN20G0044 Fragaria x ananassa HOM05D000476 ORTHO05D005719 9.3e-27 124.0 144 50.7
VMungo0720G1528 Vigna mungo HOM05D000476 ORTHO05D005719 1.2e-26 123.6 150 52.7
CAN.G588.95 Capsicum annuum HOM05D000476 ORTHO05D005719 1.6e-26 123.2 148 48.0
Ca_03300_v3 Cicer arietinum L. HOM05D000476 ORTHO05D005719 1.6e-26 123.2 142 53.5
PGSC0003DMG400018042 Solanum tuberosum HOM05D000476 ORTHO05D005719 2.1e-26 122.9 153 49.0
Peaxi162Scf00362g00535 Petunia axillaris HOM05D000476 ORTHO05D005719 2.7e-26 122.5 155 47.7
PGR142G3087 Punica granatum HOM05D000476 ORTHO05D005719 3.5e-26 122.1 150 50.7
Potri.005G108400 Populus trichocarpa HOM05D000476 ORTHO05D005719 7.9e-26 120.9 140 51.4
Ah.01g023180 Amaranthus hybridus HOM05D000476 ORTHO05D005719 1.3e-25 120.2 145 50.3
Migut.B00063 Erythranthe guttata HOM05D000476 ORTHO05D005719 1.3e-25 120.2 152 51.3
Solyc01g111740.3 Solanum lycopersicum HOM05D000476 ORTHO05D005719 1.3e-25 120.2 150 48.7
HanXRQChr10g0300811 Helianthus annuus HOM05D000476 ORTHO05D005719 1.8e-25 119.8 145 53.1
Lj5g0010360 Lotus japonicus HOM05D000476 ORTHO05D005719 1.8e-25 119.8 150 51.3
Manes.01G150500 Manihot esculenta HOM05D000476 ORTHO05D005719 1.8e-25 119.8 144 50.0
Prupe.7G174500 Prunus persica HOM05D000476 ORTHO05D005719 1.8e-25 119.8 142 52.8
FAN27G1175 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.3e-25 119.4 145 50.3
Nitab4.5_0004864g0010 Nicotiana tabacum HOM05D000476 ORTHO05D005719 2.3e-25 119.4 150 48.0
SalBow1G8296 Salvia bowleyana HOM05D000476 ORTHO05D005719 2.3e-25 119.4 138 53.6
arahy.Tifrunner.gnm1.ann1.FXE6P8 Arachis hypogaea HOM05D000476 ORTHO05D005719 3.0e-25 119.0 155 51.6
DCAR_022959 Daucus carota HOM05D000476 ORTHO05D005719 3.0e-25 119.0 140 54.3
Nitab4.5_0003698g0070 Nicotiana tabacum HOM05D000476 ORTHO05D005719 3.0e-25 119.0 161 44.1
Eucgr.I01453 Eucalyptus grandis HOM05D000476 ORTHO05D005719 8.7e-25 117.5 144 47.9
Thecc.01G012000 Theobroma cacao HOM05D000476 ORTHO05D005719 1.5e-24 116.7 144 46.5
unitig_0.g814 Utricularia gibba HOM05D000476 ORTHO05D005719 1.9e-24 116.3 149 52.3
Haze_03708 Corylus avellana HOM05D000476 ORTHO05D005719 2.5e-24 115.9 143 51.7
Sabra05G0088800 Salix brachista HOM05D000476 ORTHO05D005719 2.5e-24 115.9 142 51.4
EL10Ac9g21346 Beta vulgaris HOM05D000476 ORTHO05D005719 9.6e-24 114.0 150 52.0
Hma1.2p1_0561F.1_g178970 Hydrangea macrophylla HOM05D000476 ORTHO05D005719 9.6e-24 114.0 140 50.7
Hund06447 Selenicereus undatus HOM05D000476 ORTHO05D005719 9.6e-24 114.0 163 50.9
AUR62010017 Chenopodium quinoa HOM05D000476 ORTHO05D005719 2.1e-23 112.8 154 50.0
FvH4_1g11140 Fragaria vesca HOM05D000476 ORTHO05D005719 2.1e-23 112.8 141 51.8
FAN19G2503 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.1e-23 112.8 141 51.8
Atru.chr5.3386 Acer truncatum HOM05D000476 ORTHO05D005719 4.8e-23 111.7 157 49.7
arahy.Tifrunner.gnm1.ann1.5E9YX9 Arachis hypogaea HOM05D000476 ORTHO05D005719 6.2e-23 111.3 160 46.9
CANSAT01G2246 Cannabis sativa HOM05D000476 ORTHO05D005719 6.2e-23 111.3 144 49.3
Duzib132G1235 Durio zibethinus HOM05D000476 ORTHO05D005719 8.2e-23 110.9 113 59.3
Cfa007026 Carpinus fangiana HOM05D000476 ORTHO05D005719 1.1e-22 110.5 143 51.0
CDE09G0394 Ceratophyllum demersum HOM05D000476 ORTHO05D005719 4.0e-22 108.6 139 51.1
FAN28G1417 Fragaria x ananassa HOM05D000476 ORTHO05D005719 6.9e-22 107.8 141 52.5
FAN23G2355 Fragaria x ananassa HOM05D000476 ORTHO05D005719 1.2e-21 107.1 141 52.5
Duzib147G1555 Durio zibethinus HOM05D000476 ORTHO05D005719 1.5e-21 106.7 145 46.2
FAN26G0730 Fragaria x ananassa HOM05D000476 ORTHO05D005719 2.0e-21 106.3 141 52.5
QL06p051967 Quercus lobata HOM05D000476 ORTHO05D005719 2.0e-21 106.3 145 48.3
RcHm_v2.0_Chr2g0098421 Rosa chinensis HOM05D000476 ORTHO05D005719 5.8e-21 104.8 143 46.9
Sc18g0006370 Simmondsia chinensis HOM05D000476 ORTHO05D005719 2.2e-20 102.8 138 44.9
ECA234G3651 Erigeron canadensis HOM05D000476 ORTHO05D005719 2.9e-20 102.4 159 45.3
Gohir.A02G173900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 1.4e-19 100.1 146 45.2
Gohir.D03G005900 Gossypium hirsutum HOM05D000476 ORTHO05D005719 1.4e-19 100.1 146 45.2
Gorai.003G006300 Gossypium raimondii HOM05D000476 ORTHO05D005719 1.4e-19 100.1 146 45.2
CDE02G2797 Ceratophyllum demersum HOM05D000476 ORTHO05D005719 1.9e-19 99.8 132 50.8
Cpa.g.sc6.308 Carica papaya HOM05D000476 ORTHO05D005719 3.2e-19 99.0 144 47.9
TAR233G0001 Trochodendron aralioides HOM05D000476 ORTHO05D005719 9.3e-19 97.4 111 55.0
COL.COLO4_22490 Corchorus olitorius HOM05D000476 ORTHO05D005719 1.2e-18 97.1 154 43.5
HPP92_020729 Vanilla planifolia HOM05D000476 ORTHO05D005719 2.1e-18 96.3 149 45.0
ATR0661G123 Amborella trichopoda HOM05D000476 ORTHO05D005719 1.3e-17 93.6 135 45.2
SGA_v2.0_scaffold143G35762 Striga asiatica HOM05D000476 ORTHO05D029332 1.8e-17 93.2 150 43.3
SGA_v2.0_scaffold55G19716 Striga asiatica HOM05D000476 ORTHO05D029332 2.3e-17 92.8 110 52.7
TPR.G2450 Trifolium pratense HOM05D000476 ORTHO05D005719 6.7e-17 91.3 114 50.9
Dinv14122 Davidia involucrata HOM05D000476 ORTHO05D005719 1.9e-16 89.7 99 58.6
GSVIVG01023992001 Vitis vinifera HOM05D000476 ORTHO05D005719 5.7e-16 88.2 144 40.3
TAR381G1633 Trochodendron aralioides HOM05D000476 ORTHO05D005719 1.2e-13 80.5 143 39.9
SGA_v2.0_scaffold58G20351 Striga asiatica HOM05D000476 ORTHO05D005719 1.0e-12 77.4 148 38.5
SEGI_17897 Sequoiadendron giganteum HOM05D000476 ORTHO05D005719 1.3e-12 77.0 183 34.4
GSVIVG01005188001 Vitis vinifera HOM05D000476 ORTHO05D005719 1.4e-11 73.6 145 40.0
GSVIVG01006889001 Vitis vinifera HOM05D000476 ORTHO05D005719 1.4e-11 73.6 145 40.0
VMungo0540G2247 Vigna mungo HOM05D002022 ORTHO05D010195 1.1e-08 63.9 80 50.0
Lj2A484T43 Lonicera japonica HOM05D000476 ORTHO05D005719 1.5e-08 63.5 86 46.5
ATR0661G378 Amborella trichopoda HOM05D000476 ORTHO05D002733 1.8e-06 56.6 173 29.5
BraA08t33596Z Brassica rapa HOM05D000476 ORTHO05D002733 3.1e-06 55.8 180 30.6
Aa31LG8G14510 Aethionema arabicum HOM05D000476 ORTHO05D002733 9.1e-06 54.3 169 32.5


User provided reference genes

Program Settings