Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 2.0e-247 858.6 427 100.0
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 1.2e-210 736.5 425 83.3
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 2.2e-209 732.3 427 81.5
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 1.9e-208 729.2 427 80.8
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 2.7e-207 725.3 429 80.7
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 6.0e-207 724.2 427 80.3
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 6.6e-206 720.7 427 80.1
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 1.5e-205 719.5 427 79.6
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 2.5e-205 718.8 427 79.6
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 3.3e-205 718.4 429 79.5
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 9.6e-205 716.8 429 79.7
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 2.8e-204 715.3 436 79.6
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 6.9e-203 710.7 429 80.0
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 6.9e-203 710.7 427 79.4
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 2.0e-202 709.1 427 80.3
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.6e-202 708.8 429 79.3
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 2.6e-202 708.8 429 78.3
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 2.6e-202 708.8 427 78.5
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 7.6e-202 707.2 429 78.3
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 4.9e-201 704.5 427 78.7
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 1.1e-200 703.4 426 77.2
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 2.4e-200 702.2 448 75.4
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 3.2e-200 701.8 409 80.2
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.2e-200 701.4 433 78.3
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 5.4e-200 701.0 409 79.7
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 4.6e-199 698.0 428 78.3
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 1.5e-197 693.0 427 77.0
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 4.3e-197 691.4 409 78.2
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 5.6e-197 691.0 427 75.9
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 5.6e-197 691.0 409 78.0
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 3.6e-196 688.3 410 78.3
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.1e-195 686.8 410 78.3
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 2.4e-195 685.6 427 76.3
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 6.9e-195 684.1 410 77.8
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 9.9e-194 680.2 442 74.2
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 1.3e-193 679.9 427 75.4
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 2.2e-193 679.1 427 75.6
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.9e-193 678.7 391 83.9
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 9.3e-192 673.7 413 77.0
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.2e-191 673.3 427 75.6
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 6.0e-191 671.0 427 74.7
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 1.0e-190 670.2 428 74.3
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 5.1e-190 667.9 427 73.8
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 6.7e-190 667.5 428 74.5
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 1.5e-189 666.4 451 73.4
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.8e-188 662.1 443 71.8
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 3.7e-188 661.8 449 72.8
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 8.1e-188 660.6 426 75.6
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 1.1e-187 660.2 443 71.8
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.4e-187 659.8 443 71.6
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 2.4e-187 659.1 428 74.3
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 5.3e-187 657.9 409 75.3
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 6.9e-187 657.5 479 67.4
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.2e-186 656.8 409 76.0
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 2.0e-186 656.0 394 78.2
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 2.6e-186 655.6 392 77.0
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 4.5e-186 654.8 437 72.5
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 9.9e-186 653.7 428 72.2
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 1.3e-185 653.3 427 71.4
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 4.9e-185 651.4 413 72.9
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 2.4e-184 649.0 447 69.8
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 1.6e-183 646.4 409 74.3
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 2.1e-183 646.0 429 71.3
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 3.9e-182 641.7 430 71.6
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 5.1e-182 641.3 403 73.7
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 1.5e-181 639.8 394 76.6
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 2.5e-181 639.0 395 75.7
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 5.6e-181 637.9 428 73.6
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 3.7e-180 635.2 410 74.4
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 8.2e-180 634.0 409 71.9
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 3.1e-179 632.1 429 71.3
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 4.0e-179 631.7 428 71.7
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 3.4e-178 628.6 426 70.9
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 7.6e-178 627.5 430 70.9
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 2.9e-177 625.5 429 70.6
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 2.9e-177 625.5 429 70.6
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 8.4e-177 624.0 410 72.2
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 5.1e-174 614.8 426 70.9
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 1.1e-173 613.6 410 71.2
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.3e-172 610.1 428 68.7
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 6.9e-171 604.4 473 65.3
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 1.5e-170 603.2 370 79.2
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 5.9e-170 601.3 394 71.6
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 2.1e-167 592.8 498 61.2
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 3.6e-167 592.0 433 67.2
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 8.2e-164 580.9 409 68.0
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 1.1e-163 580.5 381 72.2
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 1.4e-163 580.1 427 66.0
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 1.3e-161 573.5 431 64.7
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 2.6e-157 559.3 346 76.3
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 4.8e-156 555.1 456 62.7
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 1.1e-155 553.9 409 63.6
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 1.2e-154 550.4 427 65.8
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 9.7e-149 530.8 427 60.7
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 1.4e-147 526.9 385 67.5
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 1.2e-143 513.8 353 68.0
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 2.7e-143 512.7 428 61.4
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 2.0e-141 506.5 414 61.4
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 4.8e-140 501.9 406 62.8
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.0e-139 498.0 435 59.3
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 5.7e-133 478.4 302 74.2
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 9.1e-131 471.1 401 57.6
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 3.7e-124 449.1 414 53.4
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 1.2e-119 434.1 292 72.6
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 6.1e-119 431.8 291 71.8
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 8.0e-119 431.4 291 72.2
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 5.2e-118 428.7 307 66.4
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 4.9e-116 422.2 433 53.1
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 1.0e-113 414.5 458 50.4
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 1.1e-112 411.0 427 53.6
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 5.4e-107 392.1 427 50.8
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 1.2e-106 391.0 418 47.1
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 1.2e-98 364.4 633 37.8
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 3.5e-98 362.8 433 45.5
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 9.9e-93 344.7 269 61.3
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 7.8e-90 335.1 287 59.2
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 1.1e-86 324.7 201 72.6
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 3.2e-83 313.2 701 32.0
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.3e-81 307.8 265 59.2
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 3.4e-61 240.0 544 32.5
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 1.1e-59 235.0 332 44.3
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 8.2e-55 218.8 145 72.4
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 7.9e-50 202.2 164 64.0
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 6.9e-46 189.1 122 71.3
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 7.2e-43 179.1 116 69.0
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 3.5e-37 160.2 288 35.8
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.0e-36 158.7 288 35.8
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.1e-35 155.2 152 49.3
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 1.5e-32 144.8 130 60.0
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 6.3e-31 139.4 90 72.2
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 1.4e-22 111.7 85 61.2
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.8e-22 111.3 76 73.7
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 2.9e-20 104.0 58 84.5
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 5.7e-16 89.7 73 56.2
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 7.5e-16 89.4 70 67.1
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 5.9e-13 79.7 91 42.9
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 2.5e-11 74.3 134 34.3
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 7.5e-08 62.8 41 63.4
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 7.5e-08 62.8 44 70.5
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 2.2e-07 61.2 54 55.6


User provided reference genes

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