Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.G00005 Eucalyptus grandis HOM05D003863 ORTHO05D004372 6.3e-35 151.0 129 100.0
Eucgr.A02407 Eucalyptus grandis HOM05D003863 ORTHO05D004372 8.0e-30 134.0 129 60.5
Lsat_1_v5_gn_8_80000 Lactuca sativa HOM05D003863 ORTHO05D004372 4.5e-25 118.2 127 50.4
Cpa.g.sc92.2 Carica papaya HOM05D003863 ORTHO05D004372 5.0e-24 114.8 129 50.4
Cfa016873 Carpinus fangiana HOM05D003863 ORTHO05D004372 5.0e-24 114.8 131 51.1
CsaV3_3G039120 Cucumis sativus L. HOM05D003863 ORTHO05D004372 5.0e-24 114.8 129 49.6
Nitab4.5_0011629g0010 Nicotiana tabacum HOM05D003863 ORTHO05D004372 6.6e-24 114.4 126 48.4
Hma1.2p1_0621F.1_g190590 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 1.1e-23 113.6 129 48.8
Nn2g15421 Nelumbo nucifera HOM05D003863 ORTHO05D004372 1.1e-23 113.6 130 70.0
Haze_19919 Corylus avellana HOM05D003863 ORTHO05D004372 1.9e-23 112.8 131 51.1
Sed0012159 Sechium edule HOM05D003863 ORTHO05D004372 1.9e-23 112.8 129 50.4
HanXRQChr05g0132211 Helianthus annuus HOM05D003863 ORTHO05D004372 2.5e-23 112.5 126 47.6
Nitab4.5_0000452g0120 Nicotiana tabacum HOM05D003863 ORTHO05D004372 3.3e-23 112.1 126 48.4
Psat6g089000 Pisum sativum HOM05D003863 ORTHO05D004372 3.3e-23 112.1 129 48.8
Actinidia09364 Actinidia chinensis HOM05D003863 ORTHO05D004372 4.3e-23 111.7 129 48.8
Sed0023590 Sechium edule HOM05D003863 ORTHO05D004372 4.3e-23 111.7 129 48.8
Thhalv10014343m.g Eutrema salsugineum HOM05D003863 ORTHO05D004372 5.6e-23 111.3 128 47.7
CARHR086750 Cardamine hirsuta HOM05D003863 ORTHO05D004372 7.3e-23 110.9 129 49.6
Rhsim04G0099400 Rhododendron simsii HOM05D003863 ORTHO05D004372 9.5e-23 110.5 129 47.3
ECA236G3425 Erigeron canadensis HOM05D003863 ORTHO05D004372 1.2e-22 110.2 130 50.0
MD14G1065200 Malus domestica HOM05D003863 ORTHO05D004372 1.2e-22 110.2 129 47.3
Oeu033773.1 Olea europaea HOM05D003863 ORTHO05D004372 1.6e-22 109.8 126 48.4
Sp3g10410 Schrenkiella parvula HOM05D003863 ORTHO05D004372 1.6e-22 109.8 129 48.1
CSS0001798 Camellia sinensis var. sinensis HOM05D003863 ORTHO05D004372 2.1e-22 109.4 130 62.3
COL.COLO4_30158 Corchorus olitorius HOM05D003863 ORTHO05D004372 2.1e-22 109.4 129 45.7
Phvul.007G256000 Phaseolus vulgaris HOM05D003863 ORTHO05D004372 2.1e-22 109.4 130 48.5
arahy.Tifrunner.gnm1.ann1.8Q4A0R Arachis hypogaea HOM05D003863 ORTHO05D004372 2.8e-22 109.0 129 48.1
AT3G12170 Arabidopsis thaliana HOM05D003863 ORTHO05D004372 3.6e-22 108.6 129 47.3
Rhsim03G0011600 Rhododendron simsii HOM05D003863 ORTHO05D004372 3.6e-22 108.6 129 58.1
GSVIVG01033339001 Vitis vinifera HOM05D003863 ORTHO05D004372 3.6e-22 108.6 130 47.7
AL3G23850 Arabidopsis lyrata HOM05D003863 ORTHO05D004372 4.7e-22 108.2 129 46.5
CAN.G1161.3 Capsicum annuum HOM05D003863 ORTHO05D004372 4.7e-22 108.2 124 46.8
Lsat_1_v5_gn_9_27640 Lactuca sativa HOM05D003863 ORTHO05D004372 4.7e-22 108.2 128 48.4
Manes.09G030000 Manihot esculenta HOM05D003863 ORTHO05D004372 4.7e-22 108.2 129 47.3
Nitab4.5_0000608g0040 Nicotiana tabacum HOM05D003863 ORTHO05D004372 4.7e-22 108.2 124 46.0
Nitab4.5_0000991g0120 Nicotiana tabacum HOM05D003863 ORTHO05D004372 4.7e-22 108.2 124 46.0
arahy.Tifrunner.gnm1.ann1.C9C50Y Arachis hypogaea HOM05D003863 ORTHO05D004372 6.1e-22 107.8 129 47.3
MBI04_g13619_MAGBIO Magnolia biondii HOM05D003863 ORTHO05D004372 6.1e-22 107.8 130 47.7
MD12G1065200 Malus domestica HOM05D003863 ORTHO05D004372 6.1e-22 107.8 127 45.7
TWI74G1121 Tripterygium wilfordii HOM05D003863 ORTHO05D004372 6.1e-22 107.8 130 47.7
TWI77G0762 Tripterygium wilfordii HOM05D003863 ORTHO05D004372 6.1e-22 107.8 130 47.7
vmacro07872 Vaccinium macrocarpon HOM05D003863 ORTHO05D004372 6.1e-22 107.8 127 45.7
Carub.0130s0002 Capsella rubella HOM05D003863 ORTHO05D004372 8.0e-22 107.5 129 46.5
Prupe.7G068800 Prunus persica HOM05D003863 ORTHO05D004372 8.0e-22 107.5 129 46.5
CSS0033131 Camellia sinensis var. sinensis HOM05D003863 ORTHO05D004372 1.0e-21 107.1 64 76.6
TPR.G3845 Trifolium pratense HOM05D003863 ORTHO05D004372 1.0e-21 107.1 127 46.5
Carub.0003s1154 Capsella rubella HOM05D003863 ORTHO05D004372 1.4e-21 106.7 129 46.5
Lalb_Chr20g0110941 Lupinus albus HOM05D003863 ORTHO05D004372 1.4e-21 106.7 131 46.6
Medtr1g052110 Medicago truncatula HOM05D003863 ORTHO05D004372 1.4e-21 106.7 129 46.5
PGR004G2357 Punica granatum HOM05D003863 ORTHO05D004372 1.4e-21 106.7 131 47.3
TAR623G1565 Trochodendron aralioides HOM05D003863 ORTHO05D004372 1.4e-21 106.7 131 48.1
vmacro09095 Vaccinium macrocarpon HOM05D003863 ORTHO05D004372 1.4e-21 106.7 129 46.5
ECA247G0427 Erigeron canadensis HOM05D003863 ORTHO05D004372 1.8e-21 106.3 129 46.5
Thhalv10021344m.g Eutrema salsugineum HOM05D003863 ORTHO05D004372 1.8e-21 106.3 129 48.1
Hma1.2p1_1995F.1_g310320 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 1.8e-21 106.3 129 48.1
Phvul.001G137200 Phaseolus vulgaris HOM05D003863 ORTHO05D004372 1.8e-21 106.3 64 73.4
Medtr7g092380 Medicago truncatula HOM05D003863 ORTHO05D004372 2.3e-21 105.9 127 45.7
THA.LOC104819593 Tarenaya hassleriana HOM05D003863 ORTHO05D004372 3.0e-21 105.5 59 81.4
Thecc.05G164500 Theobroma cacao HOM05D003863 ORTHO05D004372 3.0e-21 105.5 129 45.0
QL07p021922 Quercus lobata HOM05D003863 ORTHO05D004372 4.0e-21 105.1 128 44.5
Glyma.02G179900 Glycine max HOM05D003863 ORTHO05D004372 5.2e-21 104.8 130 47.7
Glyma.19G143100 Glycine max HOM05D003863 ORTHO05D004372 5.2e-21 104.8 127 44.9
Gorai.002G153200 Gossypium raimondii HOM05D003863 ORTHO05D004372 5.2e-21 104.8 128 43.0
THA.LOC104807339 Tarenaya hassleriana HOM05D003863 ORTHO05D004372 5.2e-21 104.8 63 76.2
TAR623G1571 Trochodendron aralioides HOM05D003863 ORTHO05D004372 6.8e-21 104.4 65 73.8
AT5G06910 Arabidopsis thaliana HOM05D003863 ORTHO05D004372 8.9e-21 104.0 63 74.6
Gorai.002G229300 Gossypium raimondii HOM05D003863 ORTHO05D004372 8.9e-21 104.0 129 45.0
BolC1t05258H Brassica oleracea HOM05D003863 ORTHO05D004372 1.2e-20 103.6 130 47.7
Gohir.D01G122300 Gossypium hirsutum HOM05D003863 ORTHO05D004372 1.2e-20 103.6 128 42.2
Lj7A597G67 Lonicera japonica HOM05D003863 ORTHO05D004372 1.2e-20 103.6 130 46.2
Aa31LG5G24190 Aethionema arabicum HOM05D003863 ORTHO05D004372 1.5e-20 103.2 129 45.0
Gohir.A01G195500 Gossypium hirsutum HOM05D003863 ORTHO05D004372 1.5e-20 103.2 129 44.2
HanXRQChr15g0491301 Helianthus annuus HOM05D003863 ORTHO05D004372 1.5e-20 103.2 64 71.9
Sabra06G0039800 Salix brachista HOM05D000738 ORTHO05D004372 1.5e-20 103.2 130 46.2
VMungo0720G1655 Vigna mungo HOM05D003863 ORTHO05D004372 1.5e-20 103.2 130 46.2
Glyma.10G094400 Glycine max HOM05D003863 ORTHO05D004372 2.0e-20 102.8 130 46.9
arahy.Tifrunner.gnm1.ann1.C9GWT5 Arachis hypogaea HOM05D003863 ORTHO05D004372 2.6e-20 102.4 127 43.3
arahy.Tifrunner.gnm1.ann1.S1RWR6 Arachis hypogaea HOM05D003863 ORTHO05D004372 2.6e-20 102.4 127 43.3
Carub.0006s0583 Capsella rubella HOM05D003863 ORTHO05D004372 2.6e-20 102.4 130 45.4
Dinv24118 Davidia involucrata HOM05D000738 ORTHO05D000675 2.6e-20 102.4 64 73.4
Lj1g0028028 Lotus japonicus HOM05D003863 ORTHO05D004372 2.6e-20 102.4 127 44.9
Os02g0195800 Oryza sativa ssp. japonica HOM05D003863 ORTHO05D004372 2.6e-20 102.4 64 73.4
Sc13g0002010 Simmondsia chinensis HOM05D003863 ORTHO05D004372 2.6e-20 102.4 129 43.4
Zm00001eb236340 Zea mays HOM05D003863 ORTHO05D004372 2.6e-20 102.4 64 71.9
PGSC0003DMG400008182 Solanum tuberosum HOM05D003863 ORTHO05D004372 3.4e-20 102.1 124 44.4
Aqoxy1G03653 Aquilegia oxysepala HOM05D003863 ORTHO05D004372 4.4e-20 101.7 130 45.4
BcaC09g48222 Brassica carinata HOM05D003863 ORTHO05D004372 4.4e-20 101.7 128 45.3
C01p53120 Brassica napus HOM05D003863 ORTHO05D004372 4.4e-20 101.7 128 45.3
Duzib128G1292 Durio zibethinus HOM05D003863 ORTHO05D004372 4.4e-20 101.7 130 44.6
Migut.J01791 Erythranthe guttata HOM05D003863 ORTHO05D004372 4.4e-20 101.7 124 43.5
TAR369G0992 Trochodendron aralioides HOM05D003863 ORTHO05D004372 4.4e-20 101.7 129 45.7
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 5.7e-20 101.3 64 73.4
CDE05G1286 Ceratophyllum demersum HOM05D003863 ORTHO05D004372 5.7e-20 101.3 64 68.8
Ca_25740_v3 Cicer arietinum L. HOM05D003863 ORTHO05D004372 5.7e-20 101.3 124 44.4
Nn7g36178 Nelumbo nucifera HOM05D003863 ORTHO05D004372 5.7e-20 101.3 130 44.6
Potri.006G056400 Populus trichocarpa HOM05D003863 ORTHO05D004372 5.7e-20 101.3 131 46.6
MSTRG.26104 Avicennia marina HOM05D003863 ORTHO05D004372 7.5e-20 100.9 62 72.6
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 7.5e-20 100.9 64 71.9
FvH4_5g27800 Fragaria vesca HOM05D003863 ORTHO05D004372 7.5e-20 100.9 130 43.8
RcHm_v2.0_Chr3g0480921 Rosa chinensis HOM05D003863 ORTHO05D004372 7.5e-20 100.9 130 43.8
BcaB04g21091 Brassica carinata HOM05D003863 ORTHO05D004372 9.8e-20 100.5 128 46.1
Duzib093G1809 Durio zibethinus HOM05D003863 ORTHO05D004372 9.8e-20 100.5 129 43.4
Solyc10g079090.3 Solanum lycopersicum HOM05D003863 ORTHO05D004372 9.8e-20 100.5 124 41.9
Sopen10g029730 Solanum pennellii HOM05D003863 ORTHO05D004372 9.8e-20 100.5 124 41.9
Actinidia17250 Actinidia chinensis HOM05D003863 ORTHO05D004372 1.3e-19 100.1 64 73.4
Ciclev10005578m.g Citrus clementina HOM05D003863 ORTHO05D004372 1.3e-19 100.1 130 43.1
Lj5g0011357 Lotus japonicus HOM05D003863 ORTHO05D004372 1.3e-19 100.1 126 45.2
VMungo1383G0990 Vigna mungo HOM05D003863 ORTHO05D004372 1.3e-19 100.1 127 45.7
CARHR206240 Cardamine hirsuta HOM05D003863 ORTHO05D004372 1.7e-19 99.8 129 45.0
Nn5g29748 Nelumbo nucifera HOM05D003863 ORTHO05D004372 1.7e-19 99.8 130 43.8
MELO3C000540.2 Cucumis melo HOM05D003863 ORTHO05D004372 2.2e-19 99.4 122 46.7
TPR.G22785 Trifolium pratense HOM05D003863 ORTHO05D004372 2.2e-19 99.4 129 45.7
CiPaw.10G030300 Carya illinoinensis HOM05D003863 ORTHO05D004372 2.9e-19 99.0 130 43.1
Gohir.A01G135100 Gossypium hirsutum HOM05D003863 ORTHO05D004372 2.9e-19 99.0 128 41.4
Psat3g071000 Pisum sativum HOM05D003863 ORTHO05D004372 2.9e-19 99.0 127 42.5
Actinidia38567 Actinidia chinensis HOM05D004736 ORTHO05D006424 3.7e-19 98.6 64 71.9
AL6G17060 Arabidopsis lyrata HOM05D003863 ORTHO05D004372 3.7e-19 98.6 131 44.3
BcaC05g29275 Brassica carinata HOM05D003863 ORTHO05D004372 3.7e-19 98.6 64 71.9
BolC5t34225H Brassica oleracea HOM05D003863 ORTHO05D004372 3.7e-19 98.6 64 71.9
Eucgr.D01662 Eucalyptus grandis HOM05D003863 ORTHO05D004372 3.7e-19 98.6 63 81.0
Eucgr.H04357 Eucalyptus grandis HOM05D003863 ORTHO05D004372 3.7e-19 98.6 63 81.0
Lalb_Chr25g0287491 Lupinus albus HOM05D003863 ORTHO05D004372 3.7e-19 98.6 128 44.5
Potri.016G051800 Populus trichocarpa HOM05D003863 ORTHO05D004372 3.7e-19 98.6 131 45.0
Zm00001eb205970 Zea mays HOM05D003863 ORTHO05D004372 3.7e-19 98.6 64 70.3
SGA_v2.0_scaffold105G30458 Striga asiatica HOM05D003863 ORTHO05D004372 6.4e-19 97.8 124 42.7
SGA_v2.0_scaffold69G23092 Striga asiatica HOM05D003863 ORTHO05D004372 6.4e-19 97.8 124 42.7
Zm00001eb139200 Zea mays HOM05D003863 ORTHO05D004372 8.3e-19 97.4 64 68.8
Zm00001eb230390 Zea mays HOM05D004437 ORTHO05D004372 8.3e-19 97.4 64 68.8
Sabra16G0055500 Salix brachista HOM05D000738 ORTHO05D004372 1.1e-18 97.1 64 64.1
DCAR_017002 Daucus carota HOM05D003863 ORTHO05D004372 1.8e-18 96.3 128 42.2
Cc06_g16500 Coffea canephora HOM05D003863 ORTHO05D004372 2.4e-18 95.9 125 43.2
FAN08G1264 Fragaria x ananassa HOM05D003863 ORTHO05D004372 2.4e-18 95.9 130 42.3
Nn4g24599 Nelumbo nucifera HOM05D003863 ORTHO05D004372 2.4e-18 95.9 59 69.5
Dinv36281 Davidia involucrata HOM05D003863 ORTHO05D004372 3.2e-18 95.5 126 43.7
Eucgr.D00166 Eucalyptus grandis HOM05D003863 ORTHO05D004372 3.2e-18 95.5 63 77.8
unitig_736.g22293 Utricularia gibba HOM05D003863 ORTHO05D004372 3.2e-18 95.5 61 68.9
AUR62025971 Chenopodium quinoa HOM05D003863 ORTHO05D004372 4.1e-18 95.1 64 64.1
COL.COLO4_28711 Corchorus olitorius HOM05D003863 ORTHO05D004372 4.1e-18 95.1 149 38.3
HanXRQChr14g0439201 Helianthus annuus HOM05D003863 ORTHO05D004372 4.1e-18 95.1 63 66.7
HPP92_027547 Vanilla planifolia HOM05D003863 ORTHO05D004372 4.1e-18 95.1 127 41.7
AUR62024384 Chenopodium quinoa HOM05D003863 ORTHO05D004372 5.4e-18 94.7 129 41.1
Gohir.D01G185900 Gossypium hirsutum HOM05D003863 ORTHO05D004372 5.4e-18 94.7 64 65.6
Hma1.2p1_0247F.1_g101930 Hydrangea macrophylla HOM05D003863 ORTHO05D004372 5.4e-18 94.7 57 75.4
Hund19171 Selenicereus undatus HOM05D003863 ORTHO05D004372 5.4e-18 94.7 129 41.9
unitig_899.g15083 Utricularia gibba HOM05D003863 ORTHO05D004372 5.4e-18 94.7 63 66.7
FAN04G3058 Fragaria x ananassa HOM05D003863 ORTHO05D004372 7.0e-18 94.4 128 42.2
Peaxi162Scf00003g04127 Petunia axillaris HOM05D003863 ORTHO05D004372 7.0e-18 94.4 124 44.4
DCAR_013574 Daucus carota HOM05D000738 ORTHO05D000675 9.2e-18 94.0 65 66.2
Atru.chr1.970 Acer truncatum HOM05D003863 ORTHO05D004372 1.2e-17 93.6 130 44.6
Atru.chr1.998 Acer truncatum HOM05D003863 ORTHO05D004372 1.2e-17 93.6 130 43.8
Aa31sc947G20 Aethionema arabicum HOM05D003863 ORTHO05D004372 1.2e-17 93.6 64 68.8
PSO384G3404 Papaver somniferum HOM05D003863 ORTHO05D004372 1.5e-15 86.7 64 59.4
PSO339G0957 Papaver somniferum HOM05D003863 ORTHO05D004372 5.6e-15 84.7 133 49.6
HPP92_003009 Vanilla planifolia HOM05D003863 ORTHO05D004372 2.1e-14 82.8 136 37.5
ClCG10G017290 Citrullus lanatus HOM05D003863 ORTHO05D004372 1.4e-13 80.1 206 31.1
MSTRG.10828 Avicennia marina HOM05D003863 ORTHO05D004372 2.0e-12 76.3 57 64.9
SMO140G0044 Selaginella moellendorffii HOM05D003863 ORTHO05D004372 1.1e-10 70.5 59 50.8
CBR_g31684 Chara braunii HOM05D003863 ORTHO05D004372 2.4e-10 69.3 68 50.0
CBR_g50357 Chara braunii HOM05D003863 ORTHO05D004372 2.4e-10 69.3 68 48.5
SEGI_03407 Sequoiadendron giganteum HOM05D003863 ORTHO05D004372 3.2e-10 68.9 58 51.7
AagrBONN_evm.TU.Sc2ySwM_117.632 Anthoceros agrestis HOM05D003863 ORTHO05D004372 1.6e-09 66.6 60 53.3
Pp3c11_26050 Physcomitrium patens HOM05D003863 ORTHO05D004372 4.6e-09 65.1 62 48.4
Mapoly0005s0205 Marchantia polymorpha HOM05D003863 ORTHO05D004372 6.0e-09 64.7 64 48.4
EL10Ac3g06991 Beta vulgaris HOM05D003863 ORTHO05D004372 2.5e-07 59.3 34 73.5
MELO3C009655.2 Cucumis melo HOM05D003863 ORTHO05D004372 5.6e-07 58.2 30 83.3
Ca_10136_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 1.2e-06 57.0 30 80.0
Ca_30624_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009773 1.2e-06 57.0 30 80.0
Lj4C258T4 Lonicera japonica HOM05D003863 ORTHO05D004372 1.2e-06 57.0 30 80.0


User provided reference genes

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