Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.F03466 Eucalyptus grandis HOM05D033649 ORTHO05D193798 1.6e-73 279.3 136 100.0
Eucgr.F03468 Eucalyptus grandis HOM05D033649 ORTHO05D194059 7.6e-39 164.1 126 66.7
Eucgr.F03469 Eucalyptus grandis HOM05D033649 ORTHO05D190916 6.4e-38 161.0 123 68.3
PSO675G7197 Papaver somniferum HOM05D001264 ORTHO05D001167 4.1e-08 62.0 93 36.6
Lalb_Chr20g0113841 Lupinus albus HOM05D001264 ORTHO05D001167 1.5e-07 60.1 83 32.5
PSO541G0697 Papaver somniferum HOM05D001264 ORTHO05D001167 1.5e-07 60.1 76 38.2
vmacro11724 Vaccinium macrocarpon HOM05D001264 ORTHO05D001167 2.0e-07 59.7 65 44.6
Actinidia05094 Actinidia chinensis HOM05D001264 ORTHO05D001167 2.6e-07 59.3 76 36.8
Carub.0008s1524 Capsella rubella HOM05D001264 ORTHO05D001167 3.4e-07 58.9 76 35.5
ClCG10G005380 Citrullus lanatus HOM05D001264 ORTHO05D001167 4.5e-07 58.5 76 36.8
MELO3C025375.2 Cucumis melo HOM05D001264 ORTHO05D001167 4.5e-07 58.5 76 36.8
CsaV3_3G005110 Cucumis sativus L. HOM05D001264 ORTHO05D001167 4.5e-07 58.5 76 36.8
TPR.G34802 Trifolium pratense HOM05D001264 ORTHO05D001167 4.5e-07 58.5 76 34.2
AL8G30410 Arabidopsis lyrata HOM05D001264 ORTHO05D001167 7.7e-07 57.8 76 34.2
AT5G54940 Arabidopsis thaliana HOM05D001264 ORTHO05D001167 7.7e-07 57.8 76 34.2
CANSAT11G1062 Cannabis sativa HOM05D001264 ORTHO05D001167 7.7e-07 57.8 76 36.8
Glyma.02G291500 Glycine max HOM05D001264 ORTHO05D001167 7.7e-07 57.8 76 36.8
Psat5g179280 Pisum sativum HOM05D001264 ORTHO05D001167 7.7e-07 57.8 76 35.5
PGR083G1375 Punica granatum HOM05D001264 ORTHO05D001167 7.7e-07 57.8 76 35.5
BcaB01g04336 Brassica carinata HOM05D001264 ORTHO05D001167 1.0e-06 57.4 76 35.5
BraA03t10734Z Brassica rapa HOM05D001264 ORTHO05D001167 1.0e-06 57.4 76 35.5
CARHR268280 Cardamine hirsuta HOM05D001264 ORTHO05D001167 1.0e-06 57.4 76 34.2
AUR62015781 Chenopodium quinoa HOM05D001264 ORTHO05D001167 1.0e-06 57.4 76 35.5
AUR62020438 Chenopodium quinoa HOM05D001264 ORTHO05D001167 1.0e-06 57.4 76 35.5
Sp6g16900 Schrenkiella parvula HOM05D001264 ORTHO05D001167 1.0e-06 57.4 76 35.5
EL10Ac4g07803 Beta vulgaris HOM05D001264 ORTHO05D001167 1.3e-06 57.0 76 35.5
MD03G1200400 Malus domestica HOM05D001264 ORTHO05D001167 1.3e-06 57.0 76 36.8
Oeu042766.1 Olea europaea HOM05D001264 ORTHO05D001167 1.3e-06 57.0 76 34.2
Sed0016288 Sechium edule HOM05D001264 ORTHO05D001167 1.3e-06 57.0 76 35.5
VMungo0647G0941 Vigna mungo HOM05D003536 ORTHO05D004233 1.3e-06 57.0 76 35.5
Ca_14729_v3 Cicer arietinum L. HOM05D001264 ORTHO05D001167 1.7e-06 56.6 76 34.2
Ca_30696_v3 Cicer arietinum L. HOM05D001264 ORTHO05D001167 1.7e-06 56.6 76 34.2
Eucgr.F00759 Eucalyptus grandis HOM05D001264 ORTHO05D001167 1.7e-06 56.6 76 34.2
Eucgr.F00808 Eucalyptus grandis HOM05D001264 ORTHO05D001167 1.7e-06 56.6 76 34.2
Thhalv10015063m.g Eutrema salsugineum HOM05D001264 ORTHO05D001167 1.7e-06 56.6 76 34.2
LjContig00272g0018972 Lotus japonicus HOM05D001264 ORTHO05D001167 1.7e-06 56.6 76 35.5
Oeu005524.2 Olea europaea HOM05D001264 ORTHO05D001167 1.7e-06 56.6 76 35.5
TWI38G0117 Tripterygium wilfordii HOM05D001264 ORTHO05D001167 1.7e-06 56.6 76 35.5
VMungo0540G0223 Vigna mungo HOM05D001264 ORTHO05D001167 1.7e-06 56.6 76 34.2
MELO3C013163.2 Cucumis melo HOM05D001264 ORTHO05D001167 2.2e-06 56.2 76 34.2
CsaV3_7G021830 Cucumis sativus L. HOM05D001264 ORTHO05D001167 2.2e-06 56.2 76 34.2
Dinv40758 Davidia involucrata HOM05D001264 ORTHO05D001167 2.2e-06 56.2 76 34.2
Duzib170G1113 Durio zibethinus HOM05D001264 ORTHO05D001167 2.2e-06 56.2 85 32.9
Medtr3g051950 Medicago truncatula HOM05D001264 ORTHO05D001167 2.2e-06 56.2 76 34.2
Phvul.006G043900 Phaseolus vulgaris HOM05D001264 ORTHO05D001167 2.2e-06 56.2 76 34.2
vmacro09709 Vaccinium macrocarpon HOM05D001264 ORTHO05D001167 2.2e-06 56.2 89 31.5
BcaC01g06331 Brassica carinata HOM05D001264 ORTHO05D001167 2.9e-06 55.8 76 34.2
A03p14370 Brassica napus HOM05D001264 ORTHO05D001167 2.9e-06 55.8 76 34.2
C03p16750 Brassica napus HOM05D001264 ORTHO05D001167 2.9e-06 55.8 76 34.2
BolC3t14095H Brassica oleracea HOM05D001264 ORTHO05D001167 2.9e-06 55.8 76 34.2
Cpa.g.sc12.304 Carica papaya HOM05D001264 ORTHO05D001167 2.9e-06 55.8 76 32.9
Lj6g0005421 Lotus japonicus HOM05D001264 ORTHO05D001167 2.9e-06 55.8 76 32.9
Os04g0627900 Oryza sativa ssp. japonica HOM05D001264 ORTHO05D001167 2.9e-06 55.8 104 30.8
SEGI_21003 Sequoiadendron giganteum HOM05D001264 ORTHO05D001167 2.9e-06 55.8 87 33.3
Aa31LG3G10860 Aethionema arabicum HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 32.9
BcaC04g20285 Brassica carinata HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 34.2
A10p12270 Brassica napus HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 34.2
BolC9t57416H Brassica oleracea HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 34.2
BraA10t43321Z Brassica rapa HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 34.2
CSS0031045 Camellia sinensis var. sinensis HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 32.9
Cre06.g298100 Chlamydomonas reinhardtii HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 36.8
ClCG09G010810 Citrullus lanatus HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 34.2
Migut.M01758 Erythranthe guttata HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 32.9
Hma1.2p1_1067F.1_g253945 Hydrangea macrophylla HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 35.5
Hma1.2p1_2518F.1_g323750 Hydrangea macrophylla HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 35.5
Oeu007578.1 Olea europaea HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 34.2
Phvul.008G267800 Phaseolus vulgaris HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 34.2
Potri.010G151700 Populus trichocarpa HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 34.2
Sabra10G0116800 Salix brachista HOM05D000777 ORTHO05D000595 3.8e-06 55.5 85 34.1
SMO174G0133 Selaginella moellendorffii HOM05D001264 ORTHO05D001167 3.8e-06 55.5 87 33.3
Sc03g0008580 Simmondsia chinensis HOM05D001264 ORTHO05D001167 3.8e-06 55.5 76 35.5
MSTRG.15146 Avicennia marina HOM05D001264 ORTHO05D001167 5.0e-06 55.1 76 34.2
Gohir.A01G079800 Gossypium hirsutum HOM05D001264 ORTHO05D001167 5.0e-06 55.1 85 32.9
Gohir.D01G067000 Gossypium hirsutum HOM05D001264 ORTHO05D001167 5.0e-06 55.1 85 32.9
Gorai.002G088900 Gossypium raimondii HOM05D001264 ORTHO05D001167 5.0e-06 55.1 85 32.9
GSVIVG01037653001 Vitis vinifera HOM05D001264 ORTHO05D001167 5.0e-06 55.1 76 34.2
ATR0564G522 Amborella trichopoda HOM05D001264 ORTHO05D001167 6.5e-06 54.7 87 32.2
MSTRG.12974 Avicennia marina HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 32.9
CAN.G337.134 Capsicum annuum HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 34.2
Ca_06323_v3 Cicer arietinum L. HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 34.2
Glyma.14G023300 Glycine max HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 34.2
Lalb_Chr10g0107011 Lupinus albus HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 31.6
Nitab4.5_0003495g0060 Nicotiana tabacum HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 34.2
Nitab4.5_0006685g0010 Nicotiana tabacum HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 34.2
QL08p010022 Quercus lobata HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 30.3
Solyc07g064620.2 Solanum lycopersicum HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 34.2
Sopen07g032810 Solanum pennellii HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 34.2
PGSC0003DMG400022216 Solanum tuberosum HOM05D001264 ORTHO05D001167 6.5e-06 54.7 76 34.2
BcaB08g35860 Brassica carinata HOM05D001264 ORTHO05D001167 8.5e-06 54.3 76 32.9
Peaxi162Scf00660g00083 Petunia axillaris HOM05D001264 ORTHO05D001167 8.5e-06 54.3 79 36.7
Peaxi162Scf00964g00001 Petunia axillaris HOM05D001264 ORTHO05D001167 8.5e-06 54.3 76 32.9
SGA_v2.0_scaffold18G08539 Striga asiatica HOM05D001264 ORTHO05D001167 8.5e-06 54.3 76 34.2
Thecc.07G036100 Theobroma cacao HOM05D001264 ORTHO05D001167 8.5e-06 54.3 85 32.9


User provided reference genes

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