Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 7.3e-50 200.3 103 100.0
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.8e-39 164.1 93 90.3
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.8e-39 164.1 93 90.3
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 8.3e-38 160.2 93 86.0
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 8.3e-38 160.2 93 86.0
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.1e-37 159.8 93 84.9
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 1.1e-37 159.8 93 86.0
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.9e-37 159.1 93 87.1
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.2e-37 158.3 93 83.9
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.2e-37 158.3 99 81.8
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 4.1e-37 157.9 93 83.9
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 4.1e-37 157.9 93 87.1
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 5.4e-37 157.5 93 84.9
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 5.4e-37 157.5 99 81.8
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 7.0e-37 157.1 93 83.9
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 9.2e-37 156.8 99 81.8
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.2e-36 156.4 99 80.8
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 1.2e-36 156.4 99 80.8
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.2e-36 156.4 99 77.8
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.6e-36 156.0 93 82.8
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 2.1e-36 155.6 99 81.8
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.1e-36 155.6 93 84.9
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 2.1e-36 155.6 93 83.9
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.5e-36 154.8 99 80.8
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 3.5e-36 154.8 99 78.8
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 3.5e-36 154.8 93 83.9
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.6e-36 154.5 99 79.8
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 4.6e-36 154.5 99 80.8
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.6e-36 154.5 99 78.8
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 4.6e-36 154.5 93 82.8
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 4.6e-36 154.5 93 82.8
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 4.6e-36 154.5 93 83.9
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 6.0e-36 154.1 99 80.8
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 6.0e-36 154.1 93 81.7
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 7.8e-36 153.7 93 82.8
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 7.8e-36 153.7 93 82.8
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 7.8e-36 153.7 93 82.8
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 7.8e-36 153.7 93 83.9
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.0e-35 153.3 96 79.2
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 1.3e-35 152.9 99 79.8
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.3e-35 152.9 93 81.7
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.3e-35 152.9 99 78.8
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.3e-35 152.9 99 78.8
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.3e-35 152.9 91 84.6
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 1.7e-35 152.5 93 80.6
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.7e-35 152.5 93 82.8
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-35 152.5 96 80.2
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.7e-35 152.5 93 81.7
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 2.3e-35 152.1 93 80.6
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 2.3e-35 152.1 93 83.9
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.3e-35 152.1 99 79.8
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 2.3e-35 152.1 99 79.8
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 3.0e-35 151.8 99 79.8
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 3.0e-35 151.8 99 79.8
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 3.0e-35 151.8 99 79.8
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 3.0e-35 151.8 99 79.8
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 3.0e-35 151.8 99 79.8
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 3.9e-35 151.4 99 76.8
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 3.9e-35 151.4 99 78.8
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 3.9e-35 151.4 93 80.6
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.9e-35 151.4 99 76.8
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 5.1e-35 151.0 99 77.8
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 5.1e-35 151.0 99 77.8
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.6e-35 150.6 99 78.8
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 6.6e-35 150.6 85 88.2
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 6.6e-35 150.6 99 78.8
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 6.6e-35 150.6 99 77.8
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 8.6e-35 150.2 99 76.8
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 8.6e-35 150.2 99 77.8
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.1e-34 149.8 99 77.8
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.1e-34 149.8 99 77.8
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 1.1e-34 149.8 93 82.8
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.1e-34 149.8 93 80.6
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 1.1e-34 149.8 93 80.6
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.5e-34 149.4 109 75.2
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.5e-34 149.4 91 82.4
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.9e-34 149.1 93 79.6
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.9e-34 149.1 93 79.6
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.9e-34 149.1 83 89.2
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 1.9e-34 149.1 93 82.8
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 1.9e-34 149.1 99 76.8
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.5e-34 148.7 84 86.9
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 2.5e-34 148.7 93 78.5
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 2.5e-34 148.7 93 78.5
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.5e-34 148.7 99 76.8
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 3.3e-34 148.3 93 80.6
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 3.3e-34 148.3 84 86.9
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.3e-34 148.3 99 75.8
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 3.3e-34 148.3 91 82.4
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 3.3e-34 148.3 93 79.6
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.3e-34 147.9 93 79.6
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.3e-34 147.9 93 79.6
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 4.3e-34 147.9 89 82.0
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 4.3e-34 147.9 93 79.6
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 5.6e-34 147.5 83 88.0
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 7.3e-34 147.1 99 77.8
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 7.3e-34 147.1 93 79.6
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 7.3e-34 147.1 98 76.5
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 7.3e-34 147.1 99 76.8
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 9.5e-34 146.7 99 74.7
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 1.2e-33 146.4 83 88.0
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 1.2e-33 146.4 93 78.5
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.2e-33 146.4 99 74.7
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 1.6e-33 146.0 83 88.0
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 1.6e-33 146.0 93 78.5
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 1.6e-33 146.0 93 79.6
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 1.6e-33 146.0 99 74.7
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 2.1e-33 145.6 93 77.4
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 3.6e-33 144.8 99 75.8
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 6.2e-33 144.1 93 78.5
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 6.2e-33 144.1 93 78.5
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 8.1e-33 143.7 82 90.2
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.4e-32 142.9 99 74.7
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.8e-32 142.5 93 77.4
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 1.8e-32 142.5 99 74.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.1e-32 141.7 91 80.2
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 4.0e-32 141.4 99 73.7
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 5.2e-32 141.0 99 70.7
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 6.8e-32 140.6 99 71.7
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.2e-31 139.8 90 81.1
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 1.5e-31 139.4 84 84.5
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 2.6e-31 138.7 99 69.7
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 5.8e-31 137.5 91 79.1
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 4.1e-29 131.3 83 79.5
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 6.0e-28 127.5 89 74.2
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-27 126.3 89 76.4
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 2.3e-27 125.6 83 69.9
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 5.1e-27 124.4 99 64.6
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 6.6e-27 124.0 99 66.7
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 4.3e-26 121.3 83 74.7
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 5.6e-26 120.9 99 61.6
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 5.6e-26 120.9 91 63.7
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 2.8e-25 118.6 93 61.3
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-23 113.2 86 72.1
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 5.4e-21 104.4 80 63.8
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 2.8e-17 92.0 79 54.4
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.4e-16 89.7 86 59.3
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.4e-16 89.0 80 50.0
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 5.3e-16 87.8 76 63.2
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 6.9e-16 87.4 69 68.1
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.0e-15 85.9 52 82.7
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 7.6e-15 84.0 48 83.3
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 9.9e-15 83.6 60 71.7
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 1.1e-13 80.1 80 48.8
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 2.4e-13 79.0 46 78.3
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 4.2e-13 78.2 87 41.4
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 5.4e-13 77.8 56 62.5
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 2.1e-12 75.9 56 67.9
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.1e-11 71.2 45 80.0
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 8.7e-11 70.5 49 69.4
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.2e-07 60.1 43 72.1
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.5e-07 59.7 36 80.6
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 9.9e-07 57.0 36 83.3
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 9.9e-07 57.0 36 83.3
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 9.9e-07 57.0 36 83.3
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 9.9e-07 57.0 36 83.3
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 9.9e-07 57.0 36 83.3
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 6.4e-06 54.3 109 39.4


User provided reference genes

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