Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 5.2e-137 491.5 339 100.0
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 3.0e-92 342.8 336 76.2
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.5e-91 339.7 337 74.2
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 9.6e-91 337.8 314 76.8
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 2.1e-90 336.7 314 76.8
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.8e-89 333.6 342 71.9
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.8e-89 333.6 342 71.9
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 1.8e-89 333.6 337 72.4
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 5.3e-89 332.0 330 77.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 5.3e-89 332.0 323 68.7
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 5.3e-89 332.0 319 67.1
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 6.9e-89 331.6 364 61.3
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 5.8e-88 328.6 317 72.6
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.3e-87 327.4 339 71.7
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 1.7e-87 327.0 311 77.2
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 2.2e-87 326.6 337 71.8
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.4e-86 323.9 339 74.0
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 5.4e-86 322.0 334 70.7
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 5.4e-86 322.0 345 71.0
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 7.1e-86 321.6 338 73.7
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 9.3e-86 321.2 337 71.8
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 9.3e-86 321.2 321 64.5
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 1.2e-85 320.9 329 70.5
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 7.9e-85 318.2 327 69.1
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 1.8e-84 317.0 337 68.5
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 2.3e-84 316.6 316 76.9
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 3.0e-84 316.2 329 72.6
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 3.0e-84 316.2 340 72.1
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 3.0e-84 316.2 320 70.9
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 8.7e-84 314.7 334 73.7
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 8.7e-84 314.7 314 70.1
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 8.7e-84 314.7 330 73.6
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 1.1e-83 314.3 337 75.1
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.9e-83 313.5 334 73.1
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 4.3e-83 312.4 319 76.8
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 4.3e-83 312.4 345 70.4
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 4.3e-83 312.4 330 73.3
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.3e-83 312.4 318 75.2
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.3e-83 312.4 318 75.2
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 4.3e-83 312.4 315 77.1
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 1.3e-82 310.8 330 73.6
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.3e-82 310.8 337 73.3
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 2.1e-82 310.1 338 74.0
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 2.8e-82 309.7 337 70.0
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.8e-82 309.7 311 76.2
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 3.7e-82 309.3 338 71.9
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 3.7e-82 309.3 320 74.1
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.8e-81 307.0 338 72.2
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 2.4e-81 306.6 329 73.6
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 4.0e-81 305.8 319 68.0
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 4.0e-81 305.8 330 70.0
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 5.3e-81 305.4 311 68.2
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.5e-80 303.9 339 71.4
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 1.5e-80 303.9 329 67.2
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 2.6e-80 303.1 311 68.8
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 2.6e-80 303.1 319 66.1
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 2.6e-80 303.1 319 64.9
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 3.4e-80 302.8 338 71.9
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-79 300.4 311 68.5
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 1.7e-79 300.4 320 66.9
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 2.2e-79 300.1 311 68.5
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 3.8e-79 299.3 318 66.7
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 8.4e-79 298.1 320 72.2
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 8.4e-79 298.1 333 68.8
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 1.4e-78 297.4 320 72.2
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.5e-78 296.6 311 67.8
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 2.5e-78 296.6 311 67.8
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 2.5e-78 296.6 330 71.2
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 4.2e-78 295.8 333 67.0
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 9.3e-78 294.7 320 71.6
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 1.2e-77 294.3 320 71.2
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 1.6e-77 293.9 327 65.4
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.1e-77 293.5 340 70.0
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 2.1e-77 293.5 311 67.5
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 2.1e-77 293.5 311 67.5
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 2.1e-77 293.5 303 69.3
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.7e-77 293.1 317 72.2
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 3.5e-77 292.7 336 70.5
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 6.0e-77 292.0 320 65.6
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 1.0e-76 291.2 320 66.2
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 1.8e-76 290.4 330 70.6
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 2.3e-76 290.0 311 67.2
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 1.1e-75 287.7 334 69.2
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 1.5e-75 287.3 325 72.0
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 4.3e-75 285.8 320 64.7
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 5.6e-75 285.4 332 69.3
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 5.6e-75 285.4 327 71.6
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 9.6e-75 284.6 316 71.8
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 1.6e-74 283.9 310 72.3
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.1e-73 281.2 334 64.7
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 1.1e-73 281.2 339 64.6
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 2.4e-73 280.0 338 60.7
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 3.4e-72 276.2 311 64.6
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 2.9e-71 273.1 312 74.0
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 3.8e-71 272.7 333 68.2
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 4.9e-71 272.3 253 72.7
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 5.5e-70 268.9 319 66.5
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 2.1e-69 266.9 315 72.1
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 6.0e-69 265.4 318 69.2
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 6.0e-69 265.4 312 68.9
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.8e-68 263.8 311 71.4
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 8.7e-68 261.5 307 73.6
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 8.7e-68 261.5 354 55.4
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 4.3e-67 259.2 304 73.7
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 5.7e-67 258.8 285 67.4
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 2.8e-66 256.5 296 73.0
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 2.4e-65 253.4 325 63.7
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 9.0e-65 251.5 214 73.4
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 2.6e-64 250.0 318 61.3
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 1.7e-63 247.3 328 60.4
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 5.0e-63 245.7 292 65.1
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 3.2e-62 243.0 214 65.9
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 9.4e-62 241.5 296 59.8
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 1.2e-61 241.1 225 63.6
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 2.8e-58 229.9 293 64.5
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 5.0e-55 219.2 333 54.4
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 6.5e-55 218.8 214 72.4
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.4e-54 217.6 174 70.7
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 1.4e-54 217.6 319 55.5
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 8.8e-52 208.4 176 73.3
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-51 206.8 175 73.7
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 2.4e-49 200.3 177 59.9
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 3.1e-49 199.9 177 59.9
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 1.2e-48 198.0 334 52.7
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 1.5e-48 197.6 309 60.5
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.0e-47 194.9 336 50.9
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 5.0e-47 192.6 322 53.1
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 6.5e-47 192.2 182 64.3
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 3.2e-46 189.9 177 65.5
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.6e-45 187.6 300 56.0
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 8.8e-44 181.8 182 70.3
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 7.4e-43 178.7 325 53.2
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 1.7e-42 177.6 135 70.4
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 2.8e-42 176.8 216 55.1
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.8e-42 176.8 333 48.0
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 9.1e-41 171.8 207 83.1
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 7.7e-40 168.7 129 70.5
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.0e-39 168.3 160 57.5
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.7e-39 167.5 153 66.0
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 2.9e-39 166.8 212 76.4
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 6.5e-39 165.6 161 58.4
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 6.5e-39 165.6 149 66.4
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 9.4e-38 161.8 182 56.6
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 2.1e-37 160.6 122 70.5
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 8.0e-37 158.7 113 72.6
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 5.2e-36 156.0 154 68.2
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 4.8e-34 149.4 148 74.3
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 2.9e-31 140.2 183 77.0
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 4.2e-30 136.3 163 52.8
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 5.7e-27 125.9 174 50.0
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 5.0e-23 112.8 95 65.3
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.9e-22 110.9 95 64.2
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.9e-22 110.9 95 64.2
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 2.5e-22 110.5 144 45.1
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.2e-19 101.7 88 63.6
PRCOL_00004941 Prasinoderma coloniale HOM05D004175 ORTHO05D004664 1.5e-19 101.3 327 35.5
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.0e-17 92.4 94 56.4
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 1.0e-15 88.6 96 52.1
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 5.6e-14 82.8 96 53.1
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 9.5e-14 82.0 67 68.7
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 4.0e-12 76.6 96 43.8
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 2.6e-11 73.9 49 67.3
FAN20G2587 Fragaria x ananassa HOM05D000366 ORTHO05D000437 1.9e-09 67.8 61 59.0
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 9.2e-09 65.5 98 43.9
FAN19G2726 Fragaria x ananassa HOM05D004175 ORTHO05D004664 9.2e-09 65.5 62 59.7
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 9.2e-09 65.5 159 45.9
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 3.3e-06 57.0 32 78.1
HPP92_002875 Vanilla planifolia HOM05D004175 ORTHO05D004664 7.3e-06 55.8 78 44.9


User provided reference genes

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