Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 4.3e-109 397.9 188 100.0
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 6.3e-108 394.0 188 98.4
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.0e-106 389.0 188 97.3
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.3e-105 386.3 188 96.8
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-104 383.3 183 98.4
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.2e-100 367.1 185 91.4
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-91 339.7 167 96.4
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 5.3e-91 337.8 183 84.2
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 3.4e-90 335.1 202 77.7
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 2.2e-89 332.4 186 79.6
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 2.2e-89 332.4 184 82.1
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 6.5e-89 330.9 183 80.9
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 1.9e-88 329.3 186 78.5
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.9e-88 329.3 185 80.5
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 4.2e-88 328.2 182 81.3
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.2e-87 326.6 182 81.3
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 3.6e-87 325.1 182 79.1
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 3.6e-87 325.1 185 80.5
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 3.6e-87 325.1 185 77.8
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 6.1e-87 324.3 179 82.1
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 1.4e-86 323.2 190 76.8
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 1.4e-86 323.2 185 77.3
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 1.4e-86 323.2 185 77.3
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 1.4e-86 323.2 179 79.9
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.4e-86 323.2 179 78.2
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 3.0e-86 322.0 180 79.4
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 3.0e-86 322.0 183 78.7
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 5.2e-86 321.2 181 77.9
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 6.7e-86 320.9 190 76.3
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 8.8e-86 320.5 183 77.6
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 8.8e-86 320.5 183 77.6
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.1e-85 320.1 185 77.3
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 1.1e-85 320.1 176 80.7
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.1e-85 320.1 184 78.3
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.5e-85 319.7 181 77.9
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.5e-85 319.7 181 78.5
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 1.5e-85 319.7 181 77.3
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 1.5e-85 319.7 183 78.1
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 1.5e-85 319.7 183 78.1
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 2.6e-85 318.9 185 77.3
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 2.6e-85 318.9 183 77.6
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 2.6e-85 318.9 179 78.2
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 4.4e-85 318.2 181 77.9
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 4.4e-85 318.2 181 77.9
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.4e-85 318.2 178 80.3
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 5.7e-85 317.8 184 75.5
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 7.4e-85 317.4 181 77.3
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 7.4e-85 317.4 186 75.3
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 1.3e-84 316.6 186 74.7
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.7e-84 316.2 188 75.5
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 2.2e-84 315.8 179 78.2
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 2.2e-84 315.8 183 79.8
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 2.8e-84 315.5 200 74.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 2.8e-84 315.5 186 76.9
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 3.7e-84 315.1 182 76.4
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.7e-84 315.1 185 76.2
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 3.7e-84 315.1 185 76.2
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 4.8e-84 314.7 181 76.2
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 6.3e-84 314.3 176 79.5
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.3e-84 314.3 184 78.3
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 6.3e-84 314.3 184 78.3
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 1.4e-83 313.2 185 75.7
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.4e-83 313.2 185 74.1
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.4e-83 313.2 178 79.8
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 1.8e-83 312.8 183 75.4
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 1.8e-83 312.8 185 74.6
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 1.8e-83 312.8 176 80.1
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 2.4e-83 312.4 185 74.6
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 2.4e-83 312.4 182 75.8
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 4.1e-83 311.6 181 77.3
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 5.3e-83 311.2 187 75.9
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 5.3e-83 311.2 181 76.2
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 7.0e-83 310.8 188 76.1
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 1.0e-81 307.0 185 73.5
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.7e-81 306.2 183 72.7
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 2.2e-81 305.8 185 73.0
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 2.9e-81 305.4 185 73.5
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 2.9e-81 305.4 199 70.9
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 3.8e-81 305.1 183 73.2
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 5.0e-81 304.7 185 75.1
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 6.5e-81 304.3 181 72.9
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.9e-80 302.8 185 73.0
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.5e-80 302.4 185 73.0
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 2.5e-80 302.4 184 73.4
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 1.2e-79 300.1 182 74.2
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.2e-79 300.1 215 65.6
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 4.0e-78 295.0 176 73.3
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 5.2e-78 294.7 186 71.0
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 6.7e-78 294.3 158 85.4
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.3e-77 292.0 206 65.0
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 4.4e-77 291.6 183 71.6
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 4.4e-77 291.6 183 71.6
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 5.7e-77 291.2 168 76.8
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.1e-75 287.0 198 70.2
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 1.3e-73 280.0 154 80.5
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.3e-73 280.0 227 59.0
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 1.7e-73 279.6 227 58.6
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 2.1e-71 272.7 163 74.2
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 2.7e-71 272.3 183 65.6
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 3.6e-71 271.9 154 77.9
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.0e-70 270.4 179 67.6
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.0e-70 270.4 179 67.6
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 1.8e-70 269.6 176 68.2
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 6.8e-70 267.7 179 67.0
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 1.2e-69 266.9 171 71.9
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.4e-69 265.0 151 75.5
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 5.7e-69 264.6 151 75.5
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.3e-68 263.5 179 69.8
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 3.7e-68 261.9 280 51.1
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 6.3e-68 261.2 151 74.8
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 1.4e-67 260.0 183 68.3
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 4.5e-66 255.0 155 74.2
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-65 252.7 123 95.9
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.3e-65 252.7 148 76.4
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 2.5e-64 249.2 182 61.5
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 3.2e-64 248.8 206 56.8
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 2.8e-63 245.7 183 58.5
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 2.3e-62 242.7 148 70.9
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 1.2e-61 240.4 174 65.5
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 4.9e-60 235.0 140 72.9
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 3.6e-55 218.8 169 57.4
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 6.1e-55 218.0 182 59.3
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 8.0e-55 217.6 177 52.5
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.0e-53 213.0 146 74.0
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 1.3e-52 210.3 177 54.8
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 3.7e-52 208.8 194 57.2
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 8.6e-49 197.6 93 97.8
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.3e-44 183.7 202 44.1
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 1.7e-44 183.3 197 48.2
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 4.1e-43 178.7 186 53.2
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.1e-43 178.7 172 43.0
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 4.1e-43 178.7 172 43.0
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.7e-42 176.0 152 61.8
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 2.7e-42 176.0 91 84.6
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.5e-40 170.2 208 38.9
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 1.4e-38 163.7 120 59.2
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.7e-36 156.8 178 38.2
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 8.3e-36 154.5 161 46.6
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 9.2e-35 151.0 179 37.4
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.2e-34 150.6 142 45.1
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 5.1e-33 145.2 93 66.7
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 6.4e-28 128.3 90 64.4
Thecc.09G077100 Theobroma cacao HOM05D001119 ORTHO05D000862 1.7e-12 77.0 69 58.0
vmacro17200 Vaccinium macrocarpon HOM05D001119 ORTHO05D000862 3.2e-11 72.8 46 67.4
Nn6g32302 Nelumbo nucifera HOM05D002335 ORTHO05D006692 4.0e-06 55.8 43 62.8


User provided reference genes

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