Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.C02495 Eucalyptus grandis HOM05D006248 ORTHO05D007896 1.7e-213 745.7 370 100.0
Eucgr.C02538 Eucalyptus grandis HOM05D006248 ORTHO05D007896 6.9e-135 484.6 246 97.2
PGR102G2393 Punica granatum HOM05D006248 ORTHO05D007896 6.5e-125 451.4 328 68.9
Thecc.09G029500 Theobroma cacao HOM05D006248 ORTHO05D007896 3.1e-119 432.6 358 64.2
GSVIVG01023612001 Vitis vinifera HOM05D006248 ORTHO05D007896 2.2e-117 426.4 328 66.8
QL02p093323 Quercus lobata HOM05D006248 ORTHO05D007896 1.6e-115 420.2 326 67.2
Cfa020823 Carpinus fangiana HOM05D006248 ORTHO05D007896 3.3e-113 412.5 345 63.5
TWI09G0649 Tripterygium wilfordii HOM05D006248 ORTHO05D007896 3.3e-113 412.5 309 68.9
Duzib168G1034 Durio zibethinus HOM05D006248 ORTHO05D007896 2.8e-112 409.5 341 63.6
CiPaw.16G110600 Carya illinoinensis HOM05D006248 ORTHO05D007896 8.2e-112 407.9 348 61.2
Haze_19202 Corylus avellana HOM05D006248 ORTHO05D007896 8.2e-112 407.9 345 62.6
Gohir.A05G053300 Gossypium hirsutum HOM05D006248 ORTHO05D007896 9.1e-111 404.4 370 61.1
Prupe.7G263300 Prunus persica HOM05D006248 ORTHO05D007896 1.6e-110 403.7 342 61.4
Gorai.009G056600 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.0e-109 401.0 328 64.6
Lalb_Chr08g0234181 Lupinus albus HOM05D006248 ORTHO05D007896 1.0e-109 401.0 279 71.7
Glyma.12G163500 Glycine max HOM05D006248 ORTHO05D007896 1.3e-109 400.6 365 61.6
Gohir.D05G054900 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.3e-109 400.6 335 63.6
CiPaw.15G168100 Carya illinoinensis HOM05D006248 ORTHO05D007896 3.8e-109 399.1 347 61.1
Ca_03171_v3 Cicer arietinum L. HOM05D006248 ORTHO05D007896 5.0e-109 398.7 323 63.2
RcHm_v2.0_Chr2g0085591 Rosa chinensis HOM05D006248 ORTHO05D007896 3.2e-108 396.0 370 59.5
CSS0008954 Camellia sinensis var. sinensis HOM05D006248 ORTHO05D007896 1.6e-107 393.7 357 59.7
Actinidia38318 Actinidia chinensis HOM05D006248 ORTHO05D007896 3.6e-107 392.5 279 68.8
MD15G1144400 Malus domestica HOM05D006248 ORTHO05D007896 4.7e-107 392.1 349 60.2
Manes.14G143900 Manihot esculenta HOM05D006248 ORTHO05D007896 4.7e-107 392.1 374 58.8
Peaxi162Scf00401g00615 Petunia axillaris HOM05D006248 ORTHO05D007896 4.7e-107 392.1 296 66.2
Glyma.06G220300 Glycine max HOM05D006248 ORTHO05D007896 8.0e-107 391.3 264 74.2
Atru.chr7.37 Acer truncatum HOM05D006248 ORTHO05D007896 1.4e-106 390.6 336 61.0
FvH4_1g00880 Fragaria vesca HOM05D006248 ORTHO05D007896 4.0e-106 389.0 371 57.4
Duzib187G1891 Durio zibethinus HOM05D006248 ORTHO05D007896 8.8e-106 387.9 341 60.1
Sopen07g001690 Solanum pennellii HOM05D006248 ORTHO05D007896 8.8e-106 387.9 350 59.7
Psat1g022520 Pisum sativum HOM05D006248 ORTHO05D007896 1.5e-105 387.1 264 70.5
Rhsim01G0033000 Rhododendron simsii HOM05D006248 ORTHO05D007896 3.4e-105 386.0 271 68.6
Lj6g0025769 Lotus japonicus HOM05D006248 ORTHO05D007896 4.4e-105 385.6 368 58.7
Solyc07g005580.4 Solanum lycopersicum HOM05D006248 ORTHO05D007896 5.7e-105 385.2 282 68.4
Sed0021098 Sechium edule HOM05D006248 ORTHO05D007896 9.8e-105 384.4 368 56.5
CAN.G160.64 Capsicum annuum HOM05D006248 ORTHO05D007896 1.7e-104 383.6 298 64.4
CANSAT80G1584 Cannabis sativa HOM05D006248 ORTHO05D007896 2.2e-104 383.3 307 64.5
Phvul.007G037000 Phaseolus vulgaris HOM05D006248 ORTHO05D007896 2.2e-104 383.3 283 69.3
FAN23G2094 Fragaria x ananassa HOM05D000238 ORTHO05D001043 2.8e-104 382.9 284 68.0
Potri.006G183700 Populus trichocarpa HOM05D006248 ORTHO05D007896 3.7e-104 382.5 370 60.0
arahy.Tifrunner.gnm1.ann1.35XGVT Arachis hypogaea HOM05D006248 ORTHO05D007896 4.8e-104 382.1 313 64.5
MBI04_g39114_MAGBIO Magnolia biondii HOM05D006248 ORTHO05D007896 6.3e-104 381.7 263 71.9
PGSC0003DMG402011138 Solanum tuberosum HOM05D006248 ORTHO05D007896 6.3e-104 381.7 394 54.1
arahy.Tifrunner.gnm1.ann1.73F3S2 Arachis hypogaea HOM05D006248 ORTHO05D007896 8.3e-104 381.3 313 64.5
CANSAT80G0015 Cannabis sativa HOM05D006248 ORTHO05D007896 8.3e-104 381.3 307 64.5
FAN26G2974 Fragaria x ananassa HOM05D000238 ORTHO05D007896 8.3e-104 381.3 325 62.2
Ciclev10008803m.g Citrus clementina HOM05D006248 ORTHO05D007896 1.8e-103 380.2 322 61.5
Nn7g36251 Nelumbo nucifera HOM05D006248 ORTHO05D007896 2.4e-103 379.8 280 66.8
THA.LOC104803540 Tarenaya hassleriana HOM05D006248 ORTHO05D007896 3.1e-103 379.4 342 58.2
DCAR_019396 Daucus carota HOM05D006248 ORTHO05D007896 4.1e-103 379.0 271 70.5
Nitab4.5_0006523g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 5.4e-103 378.6 298 63.8
TPR.G3534 Trifolium pratense HOM05D006248 ORTHO05D007896 1.2e-102 377.5 292 65.4
ClCG02G020550 Citrullus lanatus HOM05D006248 ORTHO05D007896 1.6e-102 377.1 342 58.2
EL10Ac3g05888 Beta vulgaris HOM05D006248 ORTHO05D007896 2.7e-102 376.3 268 69.0
Aqoxy2G03376 Aquilegia oxysepala HOM05D006248 ORTHO05D007896 4.5e-102 375.6 334 59.6
AUR62015459 Chenopodium quinoa HOM05D006248 ORTHO05D007896 4.5e-102 375.6 265 69.4
MSTRG.10698 Avicennia marina HOM05D006248 ORTHO05D007896 5.9e-102 375.2 269 69.9
Oeu054273.3 Olea europaea HOM05D006248 ORTHO05D007896 1.0e-101 374.4 295 65.8
MELO3C008959.2 Cucumis melo HOM05D006248 ORTHO05D007896 1.7e-101 373.6 346 56.6
Cc06_g14900 Coffea canephora HOM05D006248 ORTHO05D007896 2.2e-101 373.2 274 67.5
Lj7A459G62 Lonicera japonica HOM05D006248 ORTHO05D007896 2.9e-101 372.9 284 66.2
Nitab4.5_0005147g0010 Nicotiana tabacum HOM05D006248 ORTHO05D007896 6.5e-101 371.7 287 64.5
TAR374G0826 Trochodendron aralioides HOM05D006248 ORTHO05D007896 6.5e-101 371.7 288 66.0
Medtr5g043620 Medicago truncatula HOM05D006248 ORTHO05D007896 8.5e-101 371.3 259 69.9
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.1e-100 370.9 318 60.4
CsaV3_4G030910 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.5e-100 370.5 272 66.9
Os10g0497100 Oryza sativa ssp. japonica HOM05D006248 ORTHO05D007896 1.2e-99 367.5 266 68.0
ECA238G3803 Erigeron canadensis HOM05D006248 ORTHO05D007896 2.1e-99 366.7 273 65.6
HanXRQChr15g0490751 Helianthus annuus HOM05D006248 ORTHO05D007896 2.1e-99 366.7 279 63.1
HanXRQChr14g0448981 Helianthus annuus HOM05D006248 ORTHO05D007896 3.6e-99 365.9 321 57.0
SGA_v2.0_scaffold347G49562 Striga asiatica HOM05D006248 ORTHO05D007896 6.1e-99 365.2 262 70.2
Hund24368 Selenicereus undatus HOM05D006248 ORTHO05D007896 1.8e-98 363.6 268 68.3
Hma1.2p1_0222F.1_g093600 Hydrangea macrophylla HOM05D006248 ORTHO05D007896 4.0e-98 362.5 306 62.4
Zm00001eb220920 Zea mays HOM05D006248 ORTHO05D007896 2.6e-97 359.8 243 71.2
PSO384G3884 Papaver somniferum HOM05D006248 ORTHO05D007896 3.4e-97 359.4 297 61.6
ATR0579G167 Amborella trichopoda HOM05D006248 ORTHO05D007896 9.8e-97 357.8 263 66.9
PSO339G1376 Papaver somniferum HOM05D006248 ORTHO05D007896 1.1e-95 354.4 297 60.9
Aa31LG2G19940 Aethionema arabicum HOM05D006248 ORTHO05D007896 2.4e-95 353.2 261 64.0
Lsat_1_v5_gn_4_165100 Lactuca sativa HOM05D006248 ORTHO05D007896 5.4e-95 352.1 319 55.2
Sp7g28450 Schrenkiella parvula HOM05D006248 ORTHO05D007896 9.1e-95 351.3 264 64.0
Migut.K00321 Erythranthe guttata HOM05D006248 ORTHO05D007896 2.0e-94 350.1 368 54.6
SalBow1G5186 Salvia bowleyana HOM05D006248 ORTHO05D007896 2.7e-94 349.7 252 69.4
Lsat_1_v5_gn_2_85220 Lactuca sativa HOM05D006248 ORTHO05D007896 3.5e-94 349.4 291 58.8
Dinv41376 Davidia involucrata HOM05D000122 ORTHO05D000139 4.5e-94 349.0 307 60.9
Cpa.g.sc46.160 Carica papaya HOM05D006248 ORTHO05D007896 7.7e-94 348.2 215 78.6
Sed0009955 Sechium edule HOM05D006248 ORTHO05D007896 1.0e-93 347.8 250 69.2
Carub.0007s0999 Capsella rubella HOM05D006248 ORTHO05D007896 2.3e-93 346.7 285 61.4
BcaNung00567 Brassica carinata HOM05D006248 ORTHO05D007896 2.9e-93 346.3 370 50.8
BolC7t46261H Brassica oleracea HOM05D006248 ORTHO05D007896 2.9e-93 346.3 370 50.8
BcaNung04566 Brassica carinata HOM05D006248 ORTHO05D007896 6.6e-93 345.1 260 62.3
CARHR238450 Cardamine hirsuta HOM05D006248 ORTHO05D007896 1.5e-92 344.0 232 69.0
Sabra06G0139600 Salix brachista HOM05D006248 ORTHO05D007896 1.5e-92 344.0 434 49.3
VMungo0720G3169 Vigna mungo HOM05D006248 ORTHO05D007896 3.3e-92 342.8 377 52.0
AL7G21560 Arabidopsis lyrata HOM05D006248 ORTHO05D007896 4.2e-92 342.4 264 62.1
BraA03t15055Z Brassica rapa HOM05D006248 ORTHO05D007896 5.6e-92 342.0 276 59.1
HPP92_007369 Vanilla planifolia HOM05D006248 ORTHO05D007896 2.8e-91 339.7 264 62.9
A03p60090 Brassica napus HOM05D006248 ORTHO05D007896 3.6e-91 339.3 275 58.9
AT4G30580 Arabidopsis thaliana HOM05D006248 ORTHO05D007896 6.1e-91 338.6 287 58.2
Gorai.010G113400 Gossypium raimondii HOM05D006248 ORTHO05D007896 1.0e-90 337.8 294 58.8
Gohir.A06G097800 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.4e-90 337.4 330 55.2
Gohir.D06G098450 Gossypium hirsutum HOM05D006248 ORTHO05D007896 1.4e-90 337.4 294 58.8
Thhalv10025500m.g Eutrema salsugineum HOM05D006248 ORTHO05D007896 1.8e-90 337.0 264 61.4
SHI18557 Sapria himalayana HOM05D006248 ORTHO05D007896 1.8e-90 337.0 236 67.8
C07p58030 Brassica napus HOM05D002357 ORTHO05D007896 2.6e-89 333.2 355 51.0
Sc06g0007960 Simmondsia chinensis HOM05D006248 ORTHO05D007896 2.4e-87 326.6 215 74.0
vmacro16799 Vaccinium macrocarpon HOM05D006248 ORTHO05D007896 6.6e-85 318.5 269 59.1
unitig_746.g26565 Utricularia gibba HOM05D006248 ORTHO05D007896 1.9e-84 317.0 239 65.7
arahy.Tifrunner.gnm1.ann1.VIT8JQ Arachis hypogaea HOM05D006248 ORTHO05D007896 1.3e-80 304.3 183 81.4
Actinidia27193 Actinidia chinensis HOM05D006248 ORTHO05D007896 1.0e-77 294.7 279 59.1
Mapoly0168s0025 Marchantia polymorpha HOM05D006248 ORTHO05D007896 1.7e-77 293.9 235 59.1
Pp3c2_20500 Physcomitrium patens HOM05D006248 ORTHO05D007896 8.1e-75 285.0 254 56.3
CDE11G0689 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 1.4e-74 284.3 189 68.8
CBR_g21007 Chara braunii HOM05D006248 ORTHO05D007896 1.2e-70 271.2 227 55.9
SMO367G0591 Selaginella moellendorffii HOM05D006248 ORTHO05D007896 6.6e-69 265.4 206 59.7
Cre09.g398289 Chlamydomonas reinhardtii HOM05D006248 ORTHO05D007896 2.6e-65 253.4 253 49.8
PRCOL_00000503 Prasinoderma coloniale HOM05D006248 ORTHO05D007896 5.8e-65 252.3 233 51.1
MCO11G046 Micromonas commoda HOM05D006248 ORTHO05D007896 1.3e-53 214.5 212 50.9
FAN28G2468 Fragaria x ananassa HOM05D000122 ORTHO05D000139 2.1e-51 207.2 261 46.4
COL.COLO4_18812 Corchorus olitorius HOM05D006248 ORTHO05D007896 9.3e-47 191.8 124 75.0
MD02G1007100 Malus domestica HOM05D006248 ORTHO05D007896 2.7e-46 190.3 124 74.2
AagrBONN_evm.TU.Sc2ySwM_368.2656 Anthoceros agrestis HOM05D006248 ORTHO05D007896 3.8e-40 169.9 134 59.7
Hund24348 Selenicereus undatus HOM05D006248 ORTHO05D007896 3.1e-26 123.6 83 69.9
BcaNung04570 Brassica carinata HOM05D006248 ORTHO05D007896 3.7e-19 100.1 82 64.6
Lj6g0015066 Lotus japonicus HOM05D001145 ORTHO05D001415 8.2e-19 99.0 68 73.5
Hund24363 Selenicereus undatus HOM05D006248 ORTHO05D007896 8.2e-19 99.0 61 75.4
Hund24364 Selenicereus undatus HOM05D006248 ORTHO05D007896 8.2e-19 99.0 61 75.4
AagrBONN_evm.TU.Sc2ySwM_362.1593 Anthoceros agrestis HOM05D006248 ORTHO05D007896 1.1e-18 98.6 160 36.2
PRCOL_00006194 Prasinoderma coloniale HOM05D006248 ORTHO05D010429 2.6e-17 94.0 177 33.3
HPP92_011139 Vanilla planifolia HOM05D008272 ORTHO05D010429 9.4e-15 85.5 195 34.4
HPP92_007364 Vanilla planifolia HOM05D006248 ORTHO05D007896 1.2e-14 85.1 78 59.0
RcHm_v2.0_Chr5g0039361 Rosa chinensis HOM05D008272 ORTHO05D010429 2.1e-14 84.3 203 29.6
Gohir.A01G079200 Gossypium hirsutum HOM05D008272 ORTHO05D010429 1.8e-13 81.3 116 38.8
QL08p010511 Quercus lobata HOM05D008272 ORTHO05D010429 1.8e-13 81.3 190 32.1
VMungo0647G0594 Vigna mungo HOM05D008272 ORTHO05D010429 1.8e-13 81.3 131 37.4
Migut.M01769 Erythranthe guttata HOM05D008272 ORTHO05D010429 3.9e-13 80.1 201 29.9
Hma1.2p1_1162F.1_g262620 Hydrangea macrophylla HOM05D008272 ORTHO05D010429 3.9e-13 80.1 116 37.9
Lalb_Chr17g0348421 Lupinus albus HOM05D008272 ORTHO05D010429 6.7e-13 79.3 116 37.9
VMungo0540G1205 Vigna mungo HOM05D008272 ORTHO05D010429 6.7e-13 79.3 204 30.9
Cpa.g.sc97.8 Carica papaya HOM05D008272 ORTHO05D010429 1.1e-12 78.6 188 32.4
CiPaw.12G129300 Carya illinoinensis HOM05D008272 ORTHO05D010429 1.1e-12 78.6 184 31.5
Os04g0625200 Oryza sativa ssp. japonica HOM05D008272 ORTHO05D010429 1.1e-12 78.6 131 35.9
arahy.Tifrunner.gnm1.ann1.MV6CSW Arachis hypogaea HOM05D008272 ORTHO05D010429 2.0e-12 77.8 194 30.4
arahy.Tifrunner.gnm1.ann1.UDA7AK Arachis hypogaea HOM05D008272 ORTHO05D010429 2.0e-12 77.8 194 30.4
Hund01995 Selenicereus undatus HOM05D008272 ORTHO05D010429 2.0e-12 77.8 183 30.6
Thecc.07G038700 Theobroma cacao HOM05D008272 ORTHO05D010429 2.0e-12 77.8 131 34.4
Duzib213G0361 Durio zibethinus HOM05D008272 ORTHO05D010429 2.5e-12 77.4 123 34.1
Gohir.D01G066300 Gossypium hirsutum HOM05D008272 ORTHO05D010429 2.5e-12 77.4 191 30.4
Potri.011G138900 Populus trichocarpa HOM05D008272 ORTHO05D010429 2.5e-12 77.4 116 37.9
MELO3C025383.2 Cucumis melo HOM05D008272 ORTHO05D010429 3.3e-12 77.0 200 30.5
Duzib170G0415 Durio zibethinus HOM05D008272 ORTHO05D010429 3.3e-12 77.0 116 36.2
GSVIVG01037640001 Vitis vinifera HOM05D008272 ORTHO05D010429 3.3e-12 77.0 131 35.1
CiPaw.11G188800 Carya illinoinensis HOM05D008272 ORTHO05D010429 4.3e-12 76.6 116 37.1
Eucgr.F03464 Eucalyptus grandis HOM05D008272 ORTHO05D010429 4.3e-12 76.6 126 35.7
ClCG10G005430 Citrullus lanatus HOM05D008272 ORTHO05D010429 5.7e-12 76.3 190 31.1
FAN24G3338 Fragaria x ananassa HOM05D008272 ORTHO05D010429 5.7e-12 76.3 116 37.1
Ciclev10008983m.g Citrus clementina HOM05D008272 ORTHO05D010429 7.4e-12 75.9 198 29.3
CsaV3_3G005170 Cucumis sativus L. HOM05D008272 ORTHO05D010429 1.3e-11 75.1 195 30.3
Manes.15G072400 Manihot esculenta HOM05D008272 ORTHO05D010429 1.3e-11 75.1 116 37.1
COL.COLO4_09657 Corchorus olitorius HOM05D008272 ORTHO05D010429 1.7e-11 74.7 116 35.3
Sabra11G0124700 Salix brachista HOM05D008272 ORTHO05D010429 2.2e-11 74.3 119 37.0
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 3.7e-11 73.6 123 34.1
Thecc.07G038600 Theobroma cacao HOM05D008272 ORTHO05D010429 4.8e-11 73.2 191 28.3
Lj1A872T54 Lonicera japonica HOM05D008272 ORTHO05D010429 6.3e-11 72.8 125 36.0
Eucgr.F00768 Eucalyptus grandis HOM05D008272 ORTHO05D010429 1.1e-10 72.0 123 35.0
PGR083G1743 Punica granatum HOM05D008272 ORTHO05D010429 1.4e-10 71.6 202 25.7
ATR0752G027 Amborella trichopoda HOM05D008272 ORTHO05D010429 4.1e-10 70.1 125 32.8
EL10Ac4g07813 Beta vulgaris HOM05D008272 ORTHO05D010429 5.3e-10 69.7 141 31.9
SMO119G0124 Selaginella moellendorffii HOM05D008272 ORTHO05D010429 1.2e-09 68.6 184 28.8
Hund23252 Selenicereus undatus HOM05D008272 ORTHO05D010429 7.7e-09 65.9 236 26.3
FvH4_2g04690 Fragaria vesca HOM05D008272 ORTHO05D010429 1.0e-08 65.5 90 37.8
Sabra11G0124400 Salix brachista HOM05D008272 ORTHO05D010429 1.3e-08 65.1 125 34.4
Cc05_g13720 Coffea canephora HOM05D008272 ORTHO05D010429 2.2e-08 64.3 192 28.1
PRCOL_00003374 Prasinoderma coloniale HOM05D008272 ORTHO05D010429 3.8e-08 63.5 135 28.9
CDE02G1773 Ceratophyllum demersum HOM05D006248 ORTHO05D007896 6.5e-08 62.8 63 52.4
Gorai.002G088200 Gossypium raimondii HOM05D008272 ORTHO05D010429 1.4e-07 61.6 191 27.7
Nn004s41404 Nelumbo nucifera HOM05D008272 ORTHO05D010429 1.9e-07 61.2 105 35.2
unitig_578.g15997 Utricularia gibba HOM05D008272 ORTHO05D010429 2.5e-07 60.8 122 29.5
Hund14975 Selenicereus undatus HOM05D008272 ORTHO05D010429 9.4e-07 58.9 229 24.9
Sc16g0006090 Simmondsia chinensis HOM05D008272 ORTHO05D010429 1.2e-06 58.5 114 32.5


User provided reference genes

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