Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 4.6e-267 924.1 502 100.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 5.6e-212 741.1 501 79.0
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 9.5e-212 740.3 500 81.2
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 4.0e-210 734.9 501 78.4
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 7.5e-209 730.7 488 79.1
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 7.5e-209 730.7 488 79.1
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 6.4e-208 727.6 500 77.8
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.4e-207 726.5 500 79.0
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 5.4e-207 724.5 504 76.6
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 1.8e-202 709.5 500 75.2
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 5.2e-202 708.0 500 75.2
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 1.2e-201 706.8 497 75.7
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.5e-201 706.4 500 76.0
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.5e-201 706.4 500 75.8
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 4.4e-201 704.9 500 75.8
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 1.4e-199 699.9 500 75.2
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 7.1e-199 697.6 500 74.4
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 9.2e-199 697.2 496 76.8
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-198 696.8 520 72.9
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.2e-198 696.8 503 75.1
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 2.7e-198 695.7 500 75.4
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 2.7e-198 695.7 496 76.6
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 3.5e-198 695.3 501 76.6
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 6.0e-198 694.5 501 76.6
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 7.8e-198 694.1 491 76.6
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.8e-198 694.1 530 71.5
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 3.0e-197 692.2 494 75.9
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 6.6e-197 691.0 499 74.5
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 8.6e-197 690.6 499 74.5
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.1e-196 690.3 493 76.5
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.9e-196 689.5 502 75.7
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 4.3e-196 688.3 500 74.0
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.3e-196 688.3 502 74.7
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.2e-195 686.8 502 74.3
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 1.2e-195 686.8 496 76.0
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-194 683.7 502 74.9
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-194 683.7 502 74.1
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 6.8e-194 681.0 502 74.3
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.0e-193 679.5 502 73.3
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-193 679.1 506 72.9
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.3e-192 676.8 502 73.1
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 4.9e-192 674.9 498 73.5
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.4e-191 673.3 487 74.3
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 3.2e-191 672.2 523 72.3
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 1.2e-190 670.2 497 74.0
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.6e-190 669.8 489 74.2
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 6.0e-190 667.9 500 72.6
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.7e-189 666.4 498 72.9
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 2.3e-189 666.0 476 75.0
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 3.0e-189 665.6 500 70.8
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 3.0e-189 665.6 499 74.5
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.1e-188 663.7 500 72.4
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 1.5e-188 663.3 491 71.5
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.5e-188 663.3 500 72.6
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 3.3e-188 662.1 500 71.4
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 7.3e-188 661.0 493 73.0
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.1e-187 659.4 494 72.7
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 2.8e-187 659.1 492 71.7
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 6.2e-187 657.9 510 72.0
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 3.1e-186 655.6 496 72.2
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 9.0e-186 654.1 501 72.1
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 3.4e-185 652.1 491 72.3
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 7.6e-185 651.0 500 70.6
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.8e-184 648.7 472 76.5
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 4.9e-184 648.3 495 70.5
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.6e-182 643.3 499 72.1
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 1.6e-182 643.3 489 72.4
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.6e-182 641.7 512 69.3
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 1.7e-181 639.8 493 70.4
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 5.1e-181 638.3 487 72.1
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 6.6e-181 637.9 493 71.0
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.1e-180 637.1 507 68.2
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 2.5e-180 636.0 507 68.6
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 2.5e-180 636.0 499 72.9
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 2.1e-179 632.9 429 80.4
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.8e-179 632.5 514 68.1
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 3.6e-179 632.1 493 69.8
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.4e-178 630.2 507 67.1
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.4e-178 630.2 483 71.6
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 3.1e-178 629.0 507 67.7
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 4.0e-178 628.6 488 69.5
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 4.5e-177 625.2 498 69.1
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 7.6e-177 624.4 504 67.7
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 9.9e-177 624.0 492 68.9
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 2.2e-176 622.9 491 69.5
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.2e-176 622.9 488 69.5
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 1.1e-175 620.5 492 68.7
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 1.2e-174 617.1 506 67.2
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 3.5e-174 615.5 500 67.4
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 8.7e-173 610.9 522 66.9
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 8.7e-173 610.9 439 74.7
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 1.9e-172 609.8 486 68.3
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 7.4e-172 607.8 486 68.1
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-171 607.1 488 68.0
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 9.0e-170 600.9 500 64.2
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.2e-169 600.5 472 68.6
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 2.2e-168 596.3 506 66.2
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 7.1e-167 591.3 494 67.6
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 3.9e-165 585.5 503 64.8
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 8.7e-165 584.3 500 64.2
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 5.6e-164 581.6 496 62.3
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.8e-162 576.6 438 73.7
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.2e-155 553.1 381 79.8
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 5.0e-152 542.0 492 63.4
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 5.0e-152 542.0 534 61.6
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.1e-150 535.0 355 81.1
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 3.7e-147 525.8 481 62.6
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 3.6e-142 509.2 482 57.9
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 4.4e-140 502.3 502 57.4
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 2.3e-133 479.9 490 58.2
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 3.3e-132 476.1 480 59.0
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 8.2e-131 471.5 453 60.5
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.4e-125 454.1 396 63.4
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 2.2e-123 446.8 372 70.2
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.8e-122 443.7 406 59.4
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.0e-121 440.3 394 67.5
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.3e-120 437.6 491 55.4
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 2.0e-108 397.1 381 60.4
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 2.0e-108 397.1 381 60.4
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.9e-95 354.0 207 86.0
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 1.0e-88 331.6 425 49.6
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 6.6e-88 328.9 369 53.1
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.5e-87 327.8 253 75.5
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 6.2e-86 322.4 324 53.4
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.3e-83 314.7 454 44.9
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.0e-81 305.8 220 75.0
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 6.2e-78 295.8 221 71.5
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 3.6e-70 270.0 381 42.0
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.8e-61 241.1 272 56.2
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.6e-60 237.3 202 65.8
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.4e-53 214.2 406 37.2
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 2.0e-52 211.1 411 35.5
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 3.5e-49 200.3 132 75.8
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.3e-47 193.7 192 57.8
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 8.2e-46 189.1 417 33.3
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 2.5e-42 177.6 290 43.8
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.8e-38 164.1 97 84.5
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.5e-36 158.3 107 68.2
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 2.6e-36 157.5 92 87.0
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 8.2e-30 136.0 88 78.4
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 6.5e-27 126.3 143 53.1
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.2e-22 111.3 96 60.4
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 1.8e-21 108.2 185 40.5
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.7e-19 101.7 122 49.2
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.1e-10 72.4 71 57.7
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 3.2e-10 70.9 66 56.1
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.2e-10 70.9 62 56.5
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.2e-10 70.9 62 56.5
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.1e-09 68.2 191 34.0
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 2.1e-09 68.2 59 67.8
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.4e-08 65.5 62 53.2
MCO09G271 Micromonas commoda HOM05D004710 ORTHO05D005445 7.5e-07 59.7 93 35.5


User provided reference genes

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