Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 0.0e+00 1308.9 691 100.0
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 6.9e-229 797.7 690 63.5
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 1.6e-222 776.5 674 62.9
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 1.8e-115 421.0 735 39.0
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 5.7e-90 336.3 703 35.1
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 1.3e-89 335.1 495 43.0
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 2.2e-89 334.3 742 34.6
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.0e-86 325.5 696 34.2
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 9.4e-85 318.9 696 34.2
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 2.1e-84 317.8 710 33.9
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 2.7e-84 317.4 358 52.2
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 1.8e-83 314.7 737 33.8
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 1.6e-79 301.6 725 33.2
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 1.6e-79 301.6 747 33.5
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 2.0e-79 301.2 742 32.9
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 2.6e-79 300.8 702 32.3
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.9e-77 294.7 755 31.8
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 5.5e-77 293.1 715 33.7
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 9.4e-77 292.4 590 37.3
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 1.6e-76 291.6 711 31.5
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 1.0e-75 288.9 714 31.0
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 2.0e-74 284.6 698 32.1
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 2.6e-74 284.3 702 32.1
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 5.7e-74 283.1 684 32.6
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 7.5e-74 282.7 590 33.7
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 2.8e-73 280.8 690 33.9
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 3.7e-73 280.4 699 31.8
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 3.7e-73 280.4 704 31.1
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 4.8e-73 280.0 691 31.8
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 4.8e-73 280.0 715 30.9
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 6.3e-73 279.6 692 33.2
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 1.8e-72 278.1 683 32.7
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.8e-72 278.1 674 32.5
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 2.4e-72 277.7 703 31.9
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 5.3e-72 276.6 721 31.3
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 7.0e-72 276.2 708 33.2
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 5.9e-71 273.1 692 31.1
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 7.7e-71 272.7 729 30.7
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 5.0e-70 270.0 703 31.7
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 5.0e-70 270.0 711 31.8
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 4.2e-69 266.9 727 31.2
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 3.6e-68 263.8 714 32.1
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.0e-67 262.3 716 31.7
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 5.2e-67 260.0 722 29.6
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 6.8e-67 259.6 716 31.1
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.4e-66 256.9 689 31.1
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 4.4e-66 256.9 641 32.0
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 4.4e-66 256.9 724 30.1
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 5.7e-66 256.5 689 30.9
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 3.7e-65 253.8 717 31.1
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 8.3e-65 252.7 694 30.3
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 8.3e-65 252.7 699 29.5
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 2.4e-64 251.1 698 30.4
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.1e-64 250.8 703 30.2
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 5.4e-64 250.0 648 31.3
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 5.4e-64 250.0 726 30.4
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.2e-63 248.8 546 35.0
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 1.6e-63 248.4 565 34.0
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.6e-63 248.4 705 29.9
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 2.0e-63 248.1 724 29.4
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 2.0e-63 248.1 721 29.5
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 2.0e-63 248.1 714 30.4
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 2.3e-62 244.6 698 30.1
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 2.3e-62 244.6 724 29.0
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 2.9e-62 244.2 612 32.2
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.9e-62 244.2 546 34.6
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 8.6e-62 242.7 702 29.1
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 1.5e-61 241.9 716 28.8
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 1.5e-61 241.9 757 29.5
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 1.5e-61 241.9 757 29.6
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 2.5e-61 241.1 570 33.3
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 3.3e-61 240.7 490 35.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 6.1e-60 236.5 561 31.2
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 8.0e-60 236.1 732 28.8
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.0e-59 235.7 691 30.0
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 1.8e-59 235.0 656 29.9
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 2.3e-59 234.6 681 28.6
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.3e-59 234.6 682 29.5
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 6.8e-59 233.0 635 30.7
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 8.9e-59 232.6 763 27.5
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 4.4e-58 230.3 715 27.8
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 4.4e-58 230.3 715 27.8
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 1.3e-57 228.8 707 29.4
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 3.7e-57 227.3 651 29.6
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 4.9e-57 226.9 552 33.3
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 8.3e-57 226.1 706 28.2
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 4.5e-55 220.3 707 28.3
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 1.7e-54 218.4 732 29.9
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 6.6e-54 216.5 679 30.3
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 8.6e-54 216.1 662 30.7
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 3.3e-53 214.2 438 34.9
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 5.6e-53 213.4 704 28.7
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 4.9e-49 200.3 687 27.7
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 2.4e-48 198.0 286 42.7
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.4e-48 198.0 457 34.4
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 1.6e-47 195.3 645 28.8
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 1.3e-46 192.2 692 27.2
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 7.5e-42 176.4 219 45.7
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 3.0e-38 164.5 286 38.8
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 3.6e-36 157.5 638 25.7
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 1.1e-35 156.0 491 30.1
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 9.6e-29 132.9 374 31.6
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 9.3e-24 116.3 322 28.6
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 1.2e-23 115.9 307 29.6
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 1.9e-21 108.6 548 26.3
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.8e-18 97.1 378 26.5
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 4.9e-17 94.0 420 24.0
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 1.9e-16 92.0 271 29.9
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 3.2e-16 91.3 499 25.1
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 2.5e-13 81.6 100 45.0
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 3.4e-10 71.2 312 25.3
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 2.2e-09 68.6 212 30.7
SEGI_29361 Sequoiadendron giganteum HOM05D006730 ORTHO05D008189 1.3e-06 59.3 267 25.1


User provided reference genes

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