Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 4738.3 2378 100.0
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 3774.2 2385 79.3
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 3744.1 2385 78.9
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 3603.9 2385 75.5
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 3288.8 2406 68.9
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2793.5 2396 58.9
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2660.6 2441 56.2
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2569.7 2446 54.3
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2569.3 2444 54.9
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2539.6 2455 53.3
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2534.2 2431 54.0
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2534.2 2464 53.9
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2518.0 2452 54.2
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2516.5 2444 53.6
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2516.1 2469 53.5
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2511.9 2411 54.3
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2508.8 2425 53.8
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2488.4 2454 54.0
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2488.0 2413 53.5
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2484.5 2437 53.2
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2484.1 2443 52.8
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2483.4 2437 53.1
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2482.6 2428 53.5
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2481.4 2443 53.6
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2479.9 2439 52.6
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2478.4 2441 52.6
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2477.6 2441 52.6
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2474.5 2435 52.4
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2451.4 2435 52.0
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2451.0 2371 53.9
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2450.6 2453 52.1
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2443.3 2469 51.6
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2437.9 2469 51.4
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2437.9 2469 51.3
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2427.1 2469 51.3
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2409.4 2427 52.3
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2407.5 2411 51.8
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2404.0 2425 52.3
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2399.4 2433 52.6
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2399.0 2395 53.0
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2395.5 2428 52.4
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2388.6 2396 52.6
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2382.4 2427 51.9
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2367.8 2421 51.7
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2366.7 2464 51.0
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2366.3 2425 51.6
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2340.8 2442 50.4
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2336.6 2424 51.4
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2323.1 2431 51.3
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2318.9 2419 50.6
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2317.7 2448 50.5
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2299.2 2377 51.2
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2278.1 2463 49.0
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2276.1 2463 48.9
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2272.7 2454 50.0
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2263.8 2424 49.5
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2261.9 2442 48.8
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2254.9 2431 49.7
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2253.8 2385 50.1
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2252.6 2405 49.6
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2244.5 2433 49.5
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2243.8 2394 49.6
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2243.4 2415 49.5
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2242.6 2404 49.3
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2238.8 2109 55.3
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2237.2 2422 48.8
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2234.9 2435 49.1
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2223.0 2434 48.8
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2218.4 2406 48.3
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2218.4 2430 48.1
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2210.6 2398 49.5
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2209.9 2403 48.4
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2209.5 2424 48.8
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2200.2 2398 48.5
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2196.4 2392 48.7
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2191.0 2425 48.8
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2190.6 2396 49.0
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2181.0 2419 48.4
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2179.8 2406 48.7
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2177.1 2404 48.7
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2166.7 2420 48.4
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2159.0 2432 47.2
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2143.2 2362 49.1
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2097.0 2068 53.0
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2094.3 2068 53.0
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2081.2 2424 47.3
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2022.7 2426 46.7
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1987.2 2217 47.6
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1953.7 2430 44.0
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1927.5 2404 45.3
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1884.0 1836 53.0
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1809.7 2486 42.8
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1630.9 2299 40.7
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1595.9 1468 55.2
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1590.5 1468 55.3
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1545.4 1522 54.3
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1539.6 1629 50.8
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1381.3 1392 53.7
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1355.5 1452 50.4
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1295.8 1098 58.6
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1228.0 1495 44.7
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1222.6 1376 49.0
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1159.8 1429 46.3
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1132.9 1138 50.8
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1110.9 1035 54.1
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 2.8e-269 933.7 1021 47.8
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.7e-266 924.5 2631 28.1
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 2.9e-266 923.7 1006 48.0
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 1.9e-262 911.0 1384 39.6
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 1.2e-256 891.7 2086 30.3
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 1.6e-248 864.8 2133 29.7
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.7e-224 784.3 1483 34.5
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 2.7e-224 784.3 902 46.5
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 8.5e-210 736.1 849 46.1
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 6.7e-207 726.5 2360 26.9
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 9.8e-190 669.5 766 45.0
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 6.4e-173 613.6 796 41.8
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 3.3e-169 601.3 786 43.4
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 4.0e-151 541.2 575 48.0
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.9e-105 389.4 403 49.6
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 3.8e-101 375.2 262 68.3
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 4.2e-100 371.7 311 55.3
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 4.8e-96 358.2 478 41.0
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 1.4e-90 340.1 475 39.2
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 3.8e-85 322.0 325 47.7
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 3.0e-74 285.8 368 44.0
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 3.8e-69 268.9 381 39.9
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 1.1e-68 267.3 317 47.0
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.8e-66 260.0 340 43.5
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 2.8e-64 252.7 474 32.7
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 4.1e-63 248.8 213 54.5
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 1.0e-58 234.2 438 36.1
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 9.5e-52 211.1 150 67.3
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.8e-51 209.5 260 48.8
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.0e-50 205.7 361 37.1
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.7e-48 200.3 277 42.2
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.1e-44 187.6 122 73.8
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 5.2e-42 178.7 822 23.8
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 1.5e-41 177.2 123 65.9
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.7e-38 166.4 185 45.9
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 6.0e-38 165.2 137 65.0
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 3.9e-37 162.5 136 58.1
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-34 154.5 110 67.3
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 2.0e-33 150.2 329 33.7
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 9.2e-31 141.4 191 44.5
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 2.1e-30 140.2 100 64.0
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 3.4e-25 122.9 371 26.4
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 1.3e-24 120.9 318 32.1
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.1e-23 117.9 98 61.2
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.4e-23 117.5 280 28.9
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 1.3e-21 110.9 220 33.6
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 3.1e-18 99.8 120 43.3
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 6.9e-18 98.6 143 37.1
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 9.9e-17 94.7 144 39.6
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 2.2e-16 93.6 106 48.1
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 1.1e-15 91.3 146 36.3
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 1.5e-12 80.9 174 31.0
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 2.5e-12 80.1 119 34.5
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 4.3e-12 79.3 118 33.9
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 2.4e-10 73.6 69 49.3
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 3.4e-09 69.7 81 43.2
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 2.2e-08 67.0 130 33.8
COL.COLO4_19568 Corchorus olitorius HOM05D005366 ORTHO05D006323 3.2e-07 63.2 42 76.2
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.2e-07 62.8 65 49.2


User provided reference genes

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