Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac9g20663 Beta vulgaris HOM05D003502 ORTHO05D004250 8.1e-55 216.9 111 100.0
EL10Ac3g05293 Beta vulgaris HOM05D003502 ORTHO05D004250 9.9e-45 183.3 148 68.9
AUR62019393 Chenopodium quinoa HOM05D003502 ORTHO05D004250 5.1e-33 144.4 146 55.5
AUR62006100 Chenopodium quinoa HOM05D003502 ORTHO05D004250 5.6e-32 141.0 146 54.1
Hund20998 Selenicereus undatus HOM05D003502 ORTHO05D004250 9.9e-29 130.2 137 52.6
AUR62006364 Chenopodium quinoa HOM05D003502 ORTHO05D004250 5.6e-24 114.4 110 54.5
EL10Ac1g00998 Beta vulgaris HOM05D003502 ORTHO05D004250 3.8e-20 101.7 104 53.8
Sc06g0007830 Simmondsia chinensis HOM05D003502 ORTHO05D004250 6.0e-18 94.4 137 43.1
Lj3C889G13 Lonicera japonica HOM05D003502 ORTHO05D004250 1.3e-15 86.7 69 63.8
TWI60G0235 Tripterygium wilfordii HOM05D003502 ORTHO05D004250 6.3e-15 84.3 84 54.8
Actinidia38803 Actinidia chinensis HOM05D003502 ORTHO05D004250 8.2e-15 84.0 91 53.8
COL.COLO4_32890 Corchorus olitorius HOM05D003502 ORTHO05D004250 8.2e-15 84.0 76 56.6
CANSAT21G0253 Cannabis sativa HOM05D003502 ORTHO05D004250 1.4e-14 83.2 86 53.5
RcHm_v2.0_Chr1g0383891 Rosa chinensis HOM05D003502 ORTHO05D004250 2.4e-14 82.4 76 60.5
Ciclev10000035m.g Citrus clementina HOM05D003502 ORTHO05D004250 3.1e-14 82.0 86 54.7
Oeu010168.1 Olea europaea HOM05D003502 ORTHO05D004250 3.1e-14 82.0 85 51.8
CSS0027375 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 4.1e-14 81.6 91 52.7
CSS0032069 Camellia sinensis var. sinensis HOM05D003502 ORTHO05D004250 4.1e-14 81.6 91 52.7
Gohir.D04G006300 Gossypium hirsutum HOM05D003502 ORTHO05D004250 4.1e-14 81.6 76 56.6
Gorai.012G007600 Gossypium raimondii HOM05D003502 ORTHO05D004250 4.1e-14 81.6 76 56.6
Prupe.2G324200 Prunus persica HOM05D003502 ORTHO05D004250 5.3e-14 81.3 86 54.7
Cfa013318 Carpinus fangiana HOM05D003502 ORTHO05D004250 6.9e-14 80.9 84 54.8
Ca_25960_v3 Cicer arietinum L. HOM05D003502 ORTHO05D004250 6.9e-14 80.9 86 52.3
Dinv29168 Davidia involucrata HOM05D003502 ORTHO05D004250 6.9e-14 80.9 66 63.6
Atru.chr8.760 Acer truncatum HOM05D003502 ORTHO05D004250 9.0e-14 80.5 149 37.6
CiPaw.01G206800 Carya illinoinensis HOM05D003502 ORTHO05D004250 9.0e-14 80.5 95 51.6
Lalb_Chr01g0010621 Lupinus albus HOM05D003502 ORTHO05D004250 9.0e-14 80.5 86 53.5
VMungo0720G2129 Vigna mungo HOM05D003502 ORTHO05D004250 9.0e-14 80.5 99 53.5
FvH4_7g33760 Fragaria vesca HOM05D003502 ORTHO05D004250 1.2e-13 80.1 156 37.2
FAN01G2009 Fragaria x ananassa HOM05D000067 ORTHO05D004250 1.2e-13 80.1 155 37.4
FAN10G2333 Fragaria x ananassa HOM05D003502 ORTHO05D004250 1.2e-13 80.1 76 59.2
GSVIVG01024439001 Vitis vinifera HOM05D003502 ORTHO05D004250 1.2e-13 80.1 91 50.5
MD07G1306200 Malus domestica HOM05D003502 ORTHO05D004250 1.5e-13 79.7 86 53.5
Phvul.007G241300 Phaseolus vulgaris HOM05D003502 ORTHO05D004250 1.5e-13 79.7 99 51.5
Thecc.10G089300 Theobroma cacao HOM05D003502 ORTHO05D004250 1.5e-13 79.7 76 51.3
TPR.G19134 Trifolium pratense HOM05D003502 ORTHO05D004250 1.5e-13 79.7 86 52.3
Manes.08G163900 Manihot esculenta HOM05D003502 ORTHO05D004250 2.0e-13 79.3 94 50.0
SGA_v2.0_scaffold283G47001 Striga asiatica HOM05D003502 ORTHO05D004250 2.0e-13 79.3 112 44.6
Gohir.A05G409100 Gossypium hirsutum HOM05D003502 ORTHO05D004250 3.4e-13 78.6 76 55.3
Lsat_1_v5_gn_6_108521 Lactuca sativa HOM05D003502 ORTHO05D004250 3.4e-13 78.6 138 41.3
Peaxi162Scf00745g00859 Petunia axillaris HOM05D003502 ORTHO05D004250 3.4e-13 78.6 66 62.1
Duzib114G0543 Durio zibethinus HOM05D003502 ORTHO05D004250 4.5e-13 78.2 76 52.6
FAN03G1761 Fragaria x ananassa HOM05D003502 ORTHO05D004250 5.9e-13 77.8 156 36.5
FAN10G2252 Fragaria x ananassa HOM05D000067 ORTHO05D004250 5.9e-13 77.8 76 57.9
MD01G1234000 Malus domestica HOM05D003502 ORTHO05D004250 5.9e-13 77.8 80 57.5
Medtr1g048630 Medicago truncatula HOM05D003502 ORTHO05D004250 5.9e-13 77.8 86 52.3
Nn1g07854 Nelumbo nucifera HOM05D003502 ORTHO05D004250 5.9e-13 77.8 82 53.7
Rhsim03G0220800 Rhododendron simsii HOM05D003502 ORTHO05D004250 5.9e-13 77.8 81 54.3
DCAR_014574 Daucus carota HOM05D003502 ORTHO05D004250 7.6e-13 77.4 102 46.1
Migut.F01860 Erythranthe guttata HOM05D003502 ORTHO05D004250 7.6e-13 77.4 76 55.3
Lj6g0010845 Lotus japonicus HOM05D003502 ORTHO05D004250 7.6e-13 77.4 78 57.7
Psat6g094760 Pisum sativum HOM05D003502 ORTHO05D004250 1.0e-12 77.0 86 50.0
Psat6g094880 Pisum sativum HOM05D003502 ORTHO05D004250 1.0e-12 77.0 86 48.8
Solyc03g096890.3 Solanum lycopersicum HOM05D003502 ORTHO05D004250 1.0e-12 77.0 81 54.3
Sopen03g027640 Solanum pennellii HOM05D003502 ORTHO05D004250 1.0e-12 77.0 81 54.3
PSO339G0895 Papaver somniferum HOM05D003502 ORTHO05D004250 1.7e-12 76.3 70 54.3
Prupe.3G137600 Prunus persica HOM05D003502 ORTHO05D004250 1.7e-12 76.3 77 58.4
Sabra19G0056000 Salix brachista HOM05D003502 ORTHO05D004250 1.7e-12 76.3 98 48.0
TAR624G0570 Trochodendron aralioides HOM05D003502 ORTHO05D004250 1.7e-12 76.3 91 48.4
vmacro06503 Vaccinium macrocarpon HOM05D003502 ORTHO05D004250 1.7e-12 76.3 81 54.3
PSO384G3919 Papaver somniferum HOM05D003502 ORTHO05D004250 2.2e-12 75.9 81 48.1
CANSAT56G1789 Cannabis sativa HOM05D003502 ORTHO05D004250 2.9e-12 75.5 84 54.8
CAN.G303.73 Capsicum annuum HOM05D003502 ORTHO05D004250 2.9e-12 75.5 81 53.1
ClCG01G005070 Citrullus lanatus HOM05D003502 ORTHO05D004250 3.8e-12 75.1 88 50.0
MSTRG.336 Avicennia marina HOM05D003502 ORTHO05D004250 5.0e-12 74.7 77 48.1
Potri.019G052500 Populus trichocarpa HOM05D003502 ORTHO05D004250 6.5e-12 74.3 75 53.3
FvH4_5g14110 Fragaria vesca HOM05D003502 ORTHO05D004250 8.5e-12 73.9 76 57.9
Nitab4.5_0005081g0060 Nicotiana tabacum HOM05D003502 ORTHO05D004250 8.5e-12 73.9 79 51.9
Nitab4.5_0000021g0390 Nicotiana tabacum HOM05D003502 ORTHO05D004250 1.1e-11 73.6 81 54.3
Glyma.10G118100 Glycine max HOM05D003502 ORTHO05D004250 1.4e-11 73.2 88 51.1
arahy.Tifrunner.gnm1.ann1.KF4QTS Arachis hypogaea HOM05D003502 ORTHO05D004250 1.9e-11 72.8 90 46.7
MELO3C005424.2 Cucumis melo HOM05D003502 ORTHO05D004250 1.9e-11 72.8 85 50.6
Eucgr.A02961 Eucalyptus grandis HOM05D003502 ORTHO05D004250 2.5e-11 72.4 87 46.0
Sed0020646 Sechium edule HOM05D003502 ORTHO05D004250 3.2e-11 72.0 79 50.6
ECA246G0536 Erigeron canadensis HOM05D003502 ORTHO05D004250 4.2e-11 71.6 150 36.7
Cc02_g00380 Coffea canephora HOM05D003502 ORTHO05D004250 5.5e-11 71.2 104 44.2
CsaV3_5G005350 Cucumis sativus L. HOM05D003502 ORTHO05D004250 5.5e-11 71.2 85 49.4
QL06p046981 Quercus lobata HOM05D003502 ORTHO05D004250 5.5e-11 71.2 130 35.4
MBI04_g06222_MAGBIO Magnolia biondii HOM05D003502 ORTHO05D004250 9.4e-11 70.5 75 46.7
Sed0005246 Sechium edule HOM05D003502 ORTHO05D004250 9.4e-11 70.5 79 50.6
Ah.07g205720 Amaranthus hybridus HOM05D003502 ORTHO05D004250 1.2e-10 70.1 117 45.3
Gorai.012G007900 Gossypium raimondii HOM05D003502 ORTHO05D004250 2.7e-10 68.9 81 49.4
HanXRQChr05g0148851 Helianthus annuus HOM05D003502 ORTHO05D004250 3.6e-10 68.6 81 49.4
Aqoxy7G00566 Aquilegia oxysepala HOM05D003502 ORTHO05D004250 7.9e-10 67.4 149 36.2
Cpa.g.sc794.1 Carica papaya HOM05D003502 ORTHO05D004250 1.0e-09 67.0 109 40.4
Lj2g0016050 Lotus japonicus HOM05D003502 ORTHO05D004250 1.4e-09 66.6 75 52.0
THA.LOC104811354 Tarenaya hassleriana HOM05D003502 ORTHO05D004250 1.8e-09 66.2 75 50.7
CARHR040300 Cardamine hirsuta HOM05D003502 ORTHO05D004250 1.5e-08 63.2 74 45.9
Carub.0001s3934 Capsella rubella HOM05D003502 ORTHO05D004250 1.9e-08 62.8 74 47.3
PGR042G1531 Punica granatum HOM05D003502 ORTHO05D004250 3.3e-08 62.0 72 51.4
SHI02505 Sapria himalayana HOM05D003502 ORTHO05D004250 5.7e-08 61.2 76 52.6
AL1G57830 Arabidopsis lyrata HOM05D003502 ORTHO05D004250 1.3e-07 60.1 74 44.6
AT1G50240 Arabidopsis thaliana HOM05D003502 ORTHO05D004250 1.7e-07 59.7 71 49.3
Sp1g37070 Schrenkiella parvula HOM05D003502 ORTHO05D004250 2.2e-07 59.3 76 40.8
C03p89540 Brassica napus HOM05D003502 ORTHO05D004250 3.7e-07 58.5 80 38.8
BolC3t21268H Brassica oleracea HOM05D003502 ORTHO05D004250 3.7e-07 58.5 80 38.8
Aa31LG10G3970 Aethionema arabicum HOM05D003502 ORTHO05D004250 4.8e-07 58.2 72 45.8
BcaB04g17262 Brassica carinata HOM05D003502 ORTHO05D004250 6.3e-07 57.8 74 40.5
BcaC01g01219 Brassica carinata HOM05D003502 ORTHO05D004250 6.3e-07 57.8 74 40.5
HanXRQChr05g0148841 Helianthus annuus HOM05D003502 ORTHO05D004250 6.3e-07 57.8 74 51.4
Psat7g150800 Pisum sativum HOM05D001894 ORTHO05D001752 6.3e-07 57.8 69 46.4
A08p03270 Brassica napus HOM05D003502 ORTHO05D004250 8.2e-07 57.4 80 40.0
BraA08t32360Z Brassica rapa HOM05D003502 ORTHO05D004250 8.2e-07 57.4 80 40.0
BcaC01g01220 Brassica carinata HOM05D003502 ORTHO05D004250 1.4e-06 56.6 74 40.5
Thhalv10011182m.g Eutrema salsugineum HOM05D003502 ORTHO05D004250 2.4e-06 55.8 66 47.0
Pp3c6_25960 Physcomitrium patens HOM05D003502 ORTHO05D004250 2.4e-06 55.8 87 40.2
ECA248G3707 Erigeron canadensis HOM05D003502 ORTHO05D004250 9.1e-06 53.9 85 41.2


User provided reference genes

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