Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac5g12174 Beta vulgaris HOM05D006869 ORTHO05D008641 2.8e-100 368.6 190 100.0
Ah.07g200090 Amaranthus hybridus HOM05D006869 ORTHO05D008641 1.8e-22 110.2 77 75.3
Hund14421 Selenicereus undatus HOM05D006869 ORTHO05D008641 4.5e-21 105.5 93 64.5
Rhsim07G0123600 Rhododendron simsii HOM05D006869 ORTHO05D008641 7.7e-21 104.8 99 63.6
Sc22g0001440 Simmondsia chinensis HOM05D006869 ORTHO05D008641 1.0e-20 104.4 72 75.0
CSS0028384 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 5.0e-20 102.1 73 71.2
CSS0030709 Camellia sinensis var. sinensis HOM05D006869 ORTHO05D008641 5.0e-20 102.1 73 71.2
Ciclev10033051m.g Citrus clementina HOM05D006869 ORTHO05D008641 6.5e-20 101.7 73 69.9
Atru.chr6.1763 Acer truncatum HOM05D006869 ORTHO05D008641 1.1e-19 100.9 66 75.8
DCAR_005606 Daucus carota HOM05D006869 ORTHO05D008641 1.1e-19 100.9 75 68.0
vmacro14155 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 1.1e-19 100.9 75 66.7
CiPaw.11G089700 Carya illinoinensis HOM05D006869 ORTHO05D008641 2.5e-19 99.8 83 62.7
GSVIVG01013242001 Vitis vinifera HOM05D006869 ORTHO05D008641 4.2e-19 99.0 83 61.4
Ca_03396_v3 Cicer arietinum L. HOM05D006869 ORTHO05D008641 5.5e-19 98.6 74 67.6
Lj3g0015338 Lotus japonicus HOM05D006869 ORTHO05D008641 5.5e-19 98.6 108 51.9
Manes.15G174500 Manihot esculenta HOM05D006869 ORTHO05D008641 9.4e-19 97.8 73 65.8
Aqoxy3G02480 Aquilegia oxysepala HOM05D006869 ORTHO05D008641 1.2e-18 97.4 112 51.8
ECA233G4479 Erigeron canadensis HOM05D006869 ORTHO05D008641 1.6e-18 97.1 73 67.1
Lsat_1_v5_gn_6_67180 Lactuca sativa HOM05D006869 ORTHO05D008641 1.6e-18 97.1 65 73.8
PSO675G8621 Papaver somniferum HOM05D006869 ORTHO05D008641 1.6e-18 97.1 65 72.3
Actinidia09229 Actinidia chinensis HOM05D002067 ORTHO05D002244 2.1e-18 96.7 123 47.2
Glyma.13G259900 Glycine max HOM05D006869 ORTHO05D008641 2.1e-18 96.7 74 66.2
PSO732G0001 Papaver somniferum HOM05D006869 ORTHO05D008641 2.1e-18 96.7 65 72.3
CiPaw.12G061200 Carya illinoinensis HOM05D006869 ORTHO05D008641 3.6e-18 95.9 113 50.4
TAR375G0341 Trochodendron aralioides HOM05D006869 ORTHO05D008641 3.6e-18 95.9 77 66.2
ClCG09G012310 Citrullus lanatus HOM05D006869 ORTHO05D008641 4.6e-18 95.5 70 64.3
Phvul.005G061500 Phaseolus vulgaris HOM05D006869 ORTHO05D008641 4.6e-18 95.5 120 46.7
Potri.001G145500 Populus trichocarpa HOM05D006869 ORTHO05D008641 4.6e-18 95.5 73 64.4
PSO832G0919 Papaver somniferum HOM05D006869 ORTHO05D008641 6.1e-18 95.1 65 70.8
TPR.G26622 Trifolium pratense HOM05D006869 ORTHO05D008641 1.0e-17 94.4 114 50.0
Gorai.006G215800 Gossypium raimondii HOM05D006869 ORTHO05D008641 1.4e-17 94.0 81 63.0
Sabra01G0114100 Salix brachista HOM05D006869 ORTHO05D008641 1.4e-17 94.0 83 59.0
TWI15G0987 Tripterygium wilfordii HOM05D006869 ORTHO05D008641 1.4e-17 94.0 83 62.7
MD06G1029000 Malus domestica HOM05D006869 ORTHO05D008641 2.3e-17 93.2 113 49.6
HanXRQChr08g0227941 Helianthus annuus HOM05D006869 ORTHO05D008641 3.9e-17 92.4 74 64.9
Hma1.2p1_0414F.1_g147870 Hydrangea macrophylla HOM05D006869 ORTHO05D008641 3.9e-17 92.4 74 64.9
Gohir.A09G198300 Gossypium hirsutum HOM05D006869 ORTHO05D008641 5.1e-17 92.0 113 49.6
Oeu015441.1 Olea europaea HOM05D006869 ORTHO05D008641 5.1e-17 92.0 71 66.2
FAN04G2266 Fragaria x ananassa HOM05D006869 ORTHO05D008641 8.8e-17 91.3 79 58.2
FAN08G2623 Fragaria x ananassa HOM05D006869 ORTHO05D008641 8.8e-17 91.3 79 58.2
Medtr2g071640 Medicago truncatula HOM05D006869 ORTHO05D008641 8.8e-17 91.3 115 47.0
arahy.Tifrunner.gnm1.ann1.TLF144 Arachis hypogaea HOM05D006869 ORTHO05D008641 1.1e-16 90.9 74 60.8
FAN18G0870 Fragaria x ananassa HOM05D006869 ORTHO05D008641 1.1e-16 90.9 79 58.2
FvH4_5g21430 Fragaria vesca HOM05D006869 ORTHO05D008641 1.5e-16 90.5 73 61.6
Lalb_Chr25g0285441 Lupinus albus HOM05D006869 ORTHO05D008641 1.5e-16 90.5 74 64.9
MBI04_g13865_MAGBIO Magnolia biondii HOM05D006869 ORTHO05D008641 1.5e-16 90.5 66 66.7
CANSAT21G0218 Cannabis sativa HOM05D006869 ORTHO05D008641 2.0e-16 90.1 66 66.7
MELO3C003378.2 Cucumis melo HOM05D006869 ORTHO05D008641 2.0e-16 90.1 106 50.0
Nitab4.5_0003100g0080 Nicotiana tabacum HOM05D006869 ORTHO05D008641 2.0e-16 90.1 84 57.1
PGR042G2539 Punica granatum HOM05D006869 ORTHO05D008641 2.0e-16 90.1 112 47.3
RcHm_v2.0_Chr7g0208861 Rosa chinensis HOM05D006869 ORTHO05D008641 2.0e-16 90.1 73 61.6
Glyma.15G248100 Glycine max HOM05D006869 ORTHO05D008641 2.5e-16 89.7 104 50.0
CsaV3_1G016990 Cucumis sativus L. HOM05D006869 ORTHO05D008641 3.3e-16 89.4 106 49.1
CsaV3_3G049460 Cucumis sativus L. HOM05D006869 ORTHO05D008641 3.3e-16 89.4 106 49.1
VMungo1080G1596 Vigna mungo HOM05D006869 ORTHO05D008641 4.3e-16 89.0 118 44.9
arahy.Tifrunner.gnm1.ann1.4F5UFQ Arachis hypogaea HOM05D006869 ORTHO05D008641 5.7e-16 88.6 74 59.5
Nn1g00590 Nelumbo nucifera HOM05D006869 ORTHO05D008641 5.7e-16 88.6 74 59.5
arahy.Tifrunner.gnm1.ann1.U4TMK5 Arachis hypogaea HOM05D006869 ORTHO05D008641 7.4e-16 88.2 78 59.0
Cc08_g02310 Coffea canephora HOM05D006869 ORTHO05D008641 7.4e-16 88.2 74 58.1
FAN13G1368 Fragaria x ananassa HOM05D006869 ORTHO05D008641 7.4e-16 88.2 104 49.0
Nitab4.5_0004658g0060 Nicotiana tabacum HOM05D006869 ORTHO05D008641 7.4e-16 88.2 96 51.0
Os02g0279600 Oryza sativa ssp. japonica HOM05D006869 ORTHO05D008641 7.4e-16 88.2 73 64.4
Duzib205G1446 Durio zibethinus HOM05D006869 ORTHO05D008641 1.3e-15 87.4 124 45.2
AL1G46570 Arabidopsis lyrata HOM05D006869 ORTHO05D008641 1.7e-15 87.0 79 59.5
Carub.0001s3075 Capsella rubella HOM05D006869 ORTHO05D008641 1.7e-15 87.0 76 60.5
COL.COLO4_17099 Corchorus olitorius HOM05D006869 ORTHO05D008641 1.7e-15 87.0 107 48.6
Thhalv10009100m.g Eutrema salsugineum HOM05D006869 ORTHO05D008641 1.7e-15 87.0 76 60.5
SalBow6G5905 Salvia bowleyana HOM05D006869 ORTHO05D008641 1.7e-15 87.0 72 56.9
Cpa.g.sc6.427 Carica papaya HOM05D006869 ORTHO05D008641 2.2e-15 86.7 63 66.7
Gohir.D09G192900 Gossypium hirsutum HOM05D006869 ORTHO05D008641 2.2e-15 86.7 113 47.8
Peaxi162Scf00497g00098 Petunia axillaris HOM05D006869 ORTHO05D008641 2.2e-15 86.7 66 65.2
THA.LOC104798477 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 2.2e-15 86.7 70 62.9
AT1G32370 Arabidopsis thaliana HOM05D006869 ORTHO05D008641 2.8e-15 86.3 76 60.5
Prupe.5G042800 Prunus persica HOM05D006869 ORTHO05D008641 3.7e-15 85.9 113 45.1
Thecc.03G232900 Theobroma cacao HOM05D006869 ORTHO05D008641 3.7e-15 85.9 114 46.5
HPP92_026375 Vanilla planifolia HOM05D006869 ORTHO05D008641 8.2e-15 84.7 114 48.2
BcaC05g27275 Brassica carinata HOM05D006869 ORTHO05D008641 1.4e-14 84.0 76 60.5
A09p33790 Brassica napus HOM05D006869 ORTHO05D008641 1.4e-14 84.0 76 60.5
C05p31830 Brassica napus HOM05D006869 ORTHO05D008641 1.4e-14 84.0 76 60.5
BolC5t31911H Brassica oleracea HOM05D006869 ORTHO05D008641 1.4e-14 84.0 76 60.5
BraA09t38929Z Brassica rapa HOM05D006869 ORTHO05D008641 1.4e-14 84.0 76 60.5
Migut.D00490 Erythranthe guttata HOM05D006869 ORTHO05D008641 1.4e-14 84.0 113 46.9
BcaB07g32921 Brassica carinata HOM05D006869 ORTHO05D008641 1.8e-14 83.6 76 59.2
Sopen06g021250 Solanum pennellii HOM05D006869 ORTHO05D008641 3.1e-14 82.8 114 46.5
PGSC0003DMG400026597 Solanum tuberosum HOM05D006869 ORTHO05D008641 4.1e-14 82.4 114 46.5
MSTRG.17527 Avicennia marina HOM05D006869 ORTHO05D008641 5.3e-14 82.0 103 46.6
Sp1g28510 Schrenkiella parvula HOM05D006869 ORTHO05D008641 6.9e-14 81.6 70 61.4
THA.LOC104798593 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 6.9e-14 81.6 110 43.6
Zm00001eb024260 Zea mays HOM05D006869 ORTHO05D008641 9.1e-14 81.3 110 48.2
Eucgr.E00305 Eucalyptus grandis HOM05D006869 ORTHO05D008641 2.0e-13 80.1 97 48.5
CARHR031750 Cardamine hirsuta HOM05D006869 ORTHO05D008641 2.6e-13 79.7 76 57.9
Aa31LG2G13630 Aethionema arabicum HOM05D006869 ORTHO05D008641 5.9e-13 78.6 111 45.9
DCAR_024975 Daucus carota HOM05D006869 ORTHO05D008641 1.7e-12 77.0 132 41.7
unitig_746.g26748 Utricularia gibba HOM05D006869 ORTHO05D008641 8.5e-12 74.7 93 44.1
Actinidia14827 Actinidia chinensis HOM05D006869 ORTHO05D008641 1.1e-11 74.3 106 43.4
Haze_08288 Corylus avellana HOM05D006869 ORTHO05D008641 1.0e-09 67.8 79 46.8
Dinv25192 Davidia involucrata HOM05D006869 ORTHO05D008641 1.8e-09 67.0 54 61.1
THA.LOC104822843 Tarenaya hassleriana HOM05D006869 ORTHO05D008641 2.3e-09 66.6 92 43.5
vmacro23515 Vaccinium macrocarpon HOM05D006869 ORTHO05D008641 8.8e-09 64.7 44 65.9
SEGI_28722 Sequoiadendron giganteum HOM05D006869 ORTHO05D008641 2.0e-08 63.5 65 50.8
ATR0049G078 Amborella trichopoda HOM05D006869 ORTHO05D008641 2.6e-08 63.2 81 50.6
AagrBONN_evm.TU.Sc2ySwM_228.2858 Anthoceros agrestis HOM05D006869 ORTHO05D008641 5.7e-08 62.0 65 46.2
PGR142G3578 Punica granatum HOM05D006869 ORTHO05D008641 7.4e-08 61.6 51 54.9
Dinv28924 Davidia involucrata HOM05D002067 ORTHO05D002244 9.7e-08 61.2 123 38.2
SGA_v2.0_scaffold94G28479 Striga asiatica HOM05D006869 ORTHO05D008641 3.7e-07 59.3 51 58.8


User provided reference genes

Program Settings