Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g04491 Beta vulgaris HOM05D006412 ORTHO05D008025 3.5e-209 731.5 399 100.0
AUR62032836 Chenopodium quinoa HOM05D006412 ORTHO05D008025 1.4e-157 560.1 375 77.1
AUR62026045 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.1e-157 558.5 367 78.7
Sc11g0008580 Simmondsia chinensis HOM05D006412 ORTHO05D008025 2.0e-135 486.5 362 70.2
RcHm_v2.0_Chr3g0493551 Rosa chinensis HOM05D006412 ORTHO05D008025 7.5e-135 484.6 366 68.0
RcHm_v2.0_Chr3g0491591 Rosa chinensis HOM05D006412 ORTHO05D008025 3.7e-134 482.3 366 68.3
Cfa007858 Carpinus fangiana HOM05D006412 ORTHO05D008025 1.1e-133 480.7 364 67.6
Prupe.3G152400 Prunus persica HOM05D006412 ORTHO05D008025 4.5e-132 475.3 361 67.6
Atru.chr1.1777 Acer truncatum HOM05D006412 ORTHO05D008025 1.7e-131 473.4 362 68.0
Cpa.g.sc116.15 Carica papaya HOM05D006412 ORTHO05D008025 2.2e-131 473.0 364 66.5
FAN24G3364 Fragaria x ananassa HOM05D006412 ORTHO05D008025 2.2e-131 473.0 365 66.6
TWI74G1556 Tripterygium wilfordii HOM05D006412 ORTHO05D008025 2.2e-131 473.0 364 66.8
FvH4_2g04020 Fragaria vesca HOM05D006412 ORTHO05D008025 2.9e-131 472.6 366 66.4
GSVIVG01030886001 Vitis vinifera HOM05D006412 ORTHO05D008025 3.8e-131 472.2 362 68.0
FAN15G2201 Fragaria x ananassa HOM05D006412 ORTHO05D008025 1.1e-130 470.7 366 66.1
PGSC0003DMG400030600 Solanum tuberosum HOM05D006412 ORTHO05D008025 1.9e-130 469.9 364 65.9
AL2G22970 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 9.4e-130 467.6 364 65.1
SalBow3G1843 Salvia bowleyana HOM05D006412 ORTHO05D008025 9.4e-130 467.6 363 65.8
Manes.01G114900 Manihot esculenta HOM05D006412 ORTHO05D008025 1.2e-129 467.2 364 64.6
Sed0012276 Sechium edule HOM05D006412 ORTHO05D008025 1.2e-129 467.2 368 65.5
Sopen02g035910 Solanum pennellii HOM05D006412 ORTHO05D008025 1.6e-129 466.8 364 65.1
MD09G1260600 Malus domestica HOM05D006412 ORTHO05D008025 3.6e-129 465.7 361 65.7
Solyc02g091290.3 Solanum lycopersicum HOM05D006412 ORTHO05D008025 4.7e-129 465.3 364 64.8
Eucgr.F02693 Eucalyptus grandis HOM05D006412 ORTHO05D008025 6.1e-129 464.9 364 65.9
AT1G66520 Arabidopsis thaliana HOM05D006412 ORTHO05D008025 1.8e-128 463.4 364 64.3
Nitab4.5_0003598g0080 Nicotiana tabacum HOM05D006412 ORTHO05D008025 2.3e-128 463.0 362 65.7
MELO3C020307.2 Cucumis melo HOM05D006412 ORTHO05D008025 4.0e-128 462.2 362 65.2
Gohir.D07G080800 Gossypium hirsutum HOM05D006412 ORTHO05D008025 8.8e-128 461.1 361 67.3
Gorai.001G085900 Gossypium raimondii HOM05D006412 ORTHO05D008025 8.8e-128 461.1 363 66.9
Sabra17G0104300 Salix brachista HOM05D006412 ORTHO05D008025 8.8e-128 461.1 362 65.5
BraA07t30973Z Brassica rapa HOM05D006412 ORTHO05D008025 1.2e-127 460.7 364 64.0
Sabra17G0101600 Salix brachista HOM05D006412 ORTHO05D008025 1.2e-127 460.7 362 65.5
BcaB03g15262 Brassica carinata HOM05D006412 ORTHO05D008025 2.6e-127 459.5 364 64.3
Aa31LG2G3160 Aethionema arabicum HOM05D006412 ORTHO05D008025 3.4e-127 459.1 364 63.7
AUR62023199 Chenopodium quinoa HOM05D006412 ORTHO05D008025 4.4e-127 458.8 362 68.2
BolC6t39074H Brassica oleracea HOM05D006412 ORTHO05D008025 5.7e-127 458.4 364 63.5
Cc07_g08250 Coffea canephora HOM05D006412 ORTHO05D008025 5.7e-127 458.4 364 65.9
Carub.0002s1254 Capsella rubella HOM05D006412 ORTHO05D008025 7.5e-127 458.0 364 63.7
Oeu030807.1 Olea europaea HOM05D006412 ORTHO05D008025 7.5e-127 458.0 383 62.7
Peaxi162Scf00803g00420 Petunia axillaris HOM05D006412 ORTHO05D008025 9.8e-127 457.6 363 65.6
PGR042G1412 Punica granatum HOM05D006412 ORTHO05D008025 1.3e-126 457.2 360 64.4
Hund16200 Selenicereus undatus HOM05D006412 ORTHO05D008025 2.2e-126 456.4 371 65.8
Lj2g0003354 Lotus japonicus HOM05D006412 ORTHO05D008025 2.8e-126 456.1 364 64.6
Nitab4.5_0002456g0120 Nicotiana tabacum HOM05D006412 ORTHO05D008025 2.8e-126 456.1 362 64.4
VMungo0464G0110 Vigna mungo HOM05D006412 ORTHO05D008025 2.8e-126 456.1 363 65.8
CAN.G625.77 Capsicum annuum HOM05D006412 ORTHO05D008025 3.7e-126 455.7 363 64.2
THA.LOC104822436 Tarenaya hassleriana HOM05D006412 ORTHO05D008025 1.4e-125 453.8 364 64.6
HanXRQChr09g0262341 Helianthus annuus HOM05D006412 ORTHO05D008025 2.4e-125 453.0 364 64.0
Sp5g21570 Schrenkiella parvula HOM05D006412 ORTHO05D008025 2.4e-125 453.0 364 63.5
BcaC08g46048 Brassica carinata HOM05D006412 ORTHO05D008025 3.1e-125 452.6 364 62.9
A07p33470 Brassica napus HOM05D006412 ORTHO05D008025 3.1e-125 452.6 364 63.2
C06p39860 Brassica napus HOM05D006412 ORTHO05D008025 3.1e-125 452.6 364 62.9
Nn3g18189 Nelumbo nucifera HOM05D006412 ORTHO05D008025 7.0e-125 451.4 364 64.0
Migut.L00473 Erythranthe guttata HOM05D006412 ORTHO05D008025 2.0e-124 449.9 365 64.1
Aqoxy3G04032 Aquilegia oxysepala HOM05D006412 ORTHO05D008025 4.5e-124 448.7 363 62.5
Lsat_1_v5_gn_4_154881 Lactuca sativa HOM05D006412 ORTHO05D008025 1.0e-123 447.6 360 64.7
Glyma.05G001000 Glycine max HOM05D006412 ORTHO05D008025 1.3e-123 447.2 364 64.8
Phvul.004G001300 Phaseolus vulgaris HOM05D006412 ORTHO05D008025 1.7e-123 446.8 363 64.7
ClCG05G010820 Citrullus lanatus HOM05D006412 ORTHO05D008025 2.3e-123 446.4 385 61.6
ECA232G0076 Erigeron canadensis HOM05D006412 ORTHO05D008025 2.9e-123 446.0 361 64.5
AL2G24490 Arabidopsis lyrata HOM05D004538 ORTHO05D006068 6.6e-123 444.9 352 64.5
Medtr6g003980 Medicago truncatula HOM05D006412 ORTHO05D008025 1.5e-122 443.7 364 63.2
PSO384G0683 Papaver somniferum HOM05D006412 ORTHO05D008025 1.9e-122 443.4 363 62.5
SGA_v2.0_scaffold174G39268 Striga asiatica HOM05D006412 ORTHO05D008025 4.2e-122 442.2 377 60.5
PSO339G1787 Papaver somniferum HOM05D006412 ORTHO05D008025 6.1e-121 438.3 364 61.3
Ca_24327_v3 Cicer arietinum L. HOM05D006412 ORTHO05D008025 1.4e-120 437.2 363 62.5
MSTRG.2784 Avicennia marina HOM05D006412 ORTHO05D008025 4.0e-120 435.6 364 61.3
TPR.G25248 Trifolium pratense HOM05D006412 ORTHO05D008025 2.6e-119 433.0 360 62.8
CANSAT78G1038 Cannabis sativa HOM05D006412 ORTHO05D008025 1.1e-117 427.6 364 61.8
vmacro18058 Vaccinium macrocarpon HOM05D006412 ORTHO05D008025 1.4e-117 427.2 418 57.4
Lalb_Chr03g0035001 Lupinus albus HOM05D006412 ORTHO05D008025 8.6e-115 417.9 360 59.7
Os01g0687500 Oryza sativa ssp. japonica HOM05D006412 ORTHO05D008025 1.1e-114 417.5 360 60.0
MBI16_g24204_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.1e-113 413.3 382 57.3
Ciclev10013714m.g Citrus clementina HOM05D006412 ORTHO05D008025 8.9e-112 407.9 427 55.5
COL.COLO4_27119 Corchorus olitorius HOM05D006412 ORTHO05D008025 9.8e-111 404.4 363 60.1
CSS0049075 Camellia sinensis var. sinensis HOM05D006412 ORTHO05D008025 1.4e-109 400.6 313 66.1
Dinv14869 Davidia involucrata HOM05D006412 ORTHO05D008025 2.4e-109 399.8 366 60.1
HPP92_024416 Vanilla planifolia HOM05D006412 ORTHO05D008025 3.2e-109 399.4 363 59.0
QL12p004163 Quercus lobata HOM05D006412 ORTHO05D008025 1.3e-107 394.0 364 59.1
unitig_32.g11755 Utricularia gibba HOM05D006412 ORTHO05D008025 1.5e-106 390.6 333 61.0
Lj2A436G33 Lonicera japonica HOM05D006412 ORTHO05D008025 3.3e-106 389.4 362 59.9
ATR0686G130 Amborella trichopoda HOM05D006412 ORTHO05D008025 9.5e-106 387.9 345 60.9
arahy.Tifrunner.gnm1.ann1.QMY2CQ Arachis hypogaea HOM05D002475 ORTHO05D002710 4.4e-103 379.0 349 58.5
TAR629G1190 Trochodendron aralioides HOM05D006412 ORTHO05D008025 1.1e-101 374.4 295 65.1
arahy.Tifrunner.gnm1.ann1.1V0F05 Arachis hypogaea HOM05D002475 ORTHO05D008025 1.4e-101 374.0 362 56.4
SMO147G0011 Selaginella moellendorffii HOM05D006412 ORTHO05D008025 1.0e-99 367.9 361 52.9
CiPaw.03G067700 Carya illinoinensis HOM05D006412 ORTHO05D008025 1.8e-96 357.1 269 69.1
AagrBONN_evm.TU.Sc2ySwM_344.1769 Anthoceros agrestis HOM05D006412 ORTHO05D008025 4.0e-96 355.9 363 52.9
MBI16_g44113_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 5.2e-96 355.5 391 51.7
Pp3c16_620 Physcomitrium patens HOM05D006412 ORTHO05D008025 2.0e-95 353.6 360 54.2
SHI30139 Sapria himalayana HOM05D006412 ORTHO05D008025 2.4e-93 346.7 329 55.0
CsaV3_3G017690 Cucumis sativus L. HOM05D006412 ORTHO05D008025 1.0e-91 341.3 267 66.3
Gohir.A07G076300 Gossypium hirsutum HOM05D006412 ORTHO05D008025 8.6e-91 338.2 266 67.7
Thecc.04G123200 Theobroma cacao HOM05D006412 ORTHO05D008025 1.1e-90 337.8 263 68.4
Potri.017G123300 Populus trichocarpa HOM05D006412 ORTHO05D008025 2.5e-90 336.7 267 66.7
SEGI_18017 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.6e-89 334.0 305 57.4
Duzib133G0980 Durio zibethinus HOM05D006412 ORTHO05D008025 1.1e-88 331.3 331 55.6
Thhalv10019000m.g Eutrema salsugineum HOM05D006412 ORTHO05D008025 8.9e-88 328.2 267 64.4
Zm00001eb156380 Zea mays HOM05D006412 ORTHO05D008025 2.6e-87 326.6 267 64.0
CARHR058440 Cardamine hirsuta HOM05D006412 ORTHO05D008025 4.4e-87 325.9 267 64.0
CBR_g48389 Chara braunii HOM05D006412 ORTHO05D008025 9.3e-85 318.2 393 45.0
Psat1g052240 Pisum sativum HOM05D006412 ORTHO05D008025 1.2e-84 317.8 267 62.5
Rhsim08G0084800 Rhododendron simsii HOM05D006412 ORTHO05D008025 7.1e-77 292.0 238 66.0
DCAR_025879 Daucus carota HOM05D006412 ORTHO05D008025 6.0e-76 288.9 342 46.8
Cre12.g560550 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 5.6e-74 282.3 371 43.7
Haze_14211 Corylus avellana HOM05D006412 ORTHO05D008025 2.4e-69 266.9 211 66.8
MCO14G351 Micromonas commoda HOM05D006412 ORTHO05D008025 1.4e-64 251.1 373 40.2
Mapoly0147s0006 Marchantia polymorpha HOM05D006412 ORTHO05D008025 8.7e-59 231.9 214 57.5
PRCOL_00006745 Prasinoderma coloniale HOM05D006412 ORTHO05D008025 3.0e-51 206.8 478 33.1
AL2G24420 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 2.9e-46 190.3 249 45.0
Cre09.g392729 Chlamydomonas reinhardtii HOM05D006412 ORTHO05D008025 5.0e-46 189.5 254 44.1
SEGI_40413 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 6.1e-44 182.6 247 44.5
TAR206G0005 Trochodendron aralioides HOM05D006412 ORTHO05D008025 6.3e-41 172.6 118 72.0
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 1.6e-36 157.9 109 69.7
Mapoly0147s0008 Marchantia polymorpha HOM05D006412 ORTHO05D008025 8.2e-33 145.6 144 54.9
MBI08_g39920_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 3.1e-32 143.7 152 50.0
Pp3s46_10 Physcomitrium patens HOM05D001724 ORTHO05D007284 3.2e-29 133.7 343 28.0
SEGI_25003 Sequoiadendron giganteum HOM05D006412 ORTHO05D008025 1.6e-28 131.3 116 55.2
MBI13_g41159_MAGBIO Magnolia biondii HOM05D006412 ORTHO05D008025 2.2e-25 120.9 137 48.2
Rhsim08G0085000 Rhododendron simsii HOM05D006412 ORTHO05D008025 2.8e-25 120.6 96 60.4
FAN20G0335 Fragaria x ananassa HOM05D006412 ORTHO05D008025 5.3e-24 116.3 78 74.4
HanXRQChr16g0531301 Helianthus annuus HOM05D006412 ORTHO05D008025 6.5e-22 109.4 81 65.4
HanXRQChr03g0068601 Helianthus annuus HOM05D006412 ORTHO05D008025 1.5e-21 108.2 73 71.2
HanXRQChr01g0030591 Helianthus annuus HOM05D006412 ORTHO05D008025 1.6e-20 104.8 71 70.4
Ca_29143_v3 Cicer arietinum L. HOM05D006412 ORTHO05D007284 5.7e-18 96.3 330 26.7
AL2G23010 Arabidopsis lyrata HOM05D006412 ORTHO05D008025 5.4e-16 89.7 108 50.9
SGA_v2.0_scaffold9G04970 Striga asiatica HOM05D006412 ORTHO05D008025 2.7e-15 87.4 64 70.3


User provided reference genes

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