Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 0.0e+00 1574.3 1025 100.0
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 0.0e+00 1133.6 1002 81.0
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 2.9e-308 1062.0 968 80.2
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 2.0e-240 836.6 943 64.5
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.5e-227 793.9 1026 63.7
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 8.1e-210 734.9 1035 56.3
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.4e-209 734.2 1054 60.5
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.4e-209 734.2 1045 54.6
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 7.6e-208 728.4 885 68.7
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.8e-207 726.1 898 68.2
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 4.9e-207 725.7 895 63.9
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.1e-206 724.5 1042 59.6
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 6.0e-205 718.8 903 63.1
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.0e-204 718.0 895 62.8
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.5e-203 713.4 1051 61.3
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 4.3e-203 712.6 1030 59.1
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.6e-202 710.7 889 59.8
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.1e-202 710.3 917 65.6
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 6.3e-202 708.8 898 67.0
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 6.3e-202 708.8 897 64.9
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.4e-201 707.6 920 66.3
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 2.9e-199 699.9 957 62.1
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 8.5e-199 698.4 1106 52.6
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.9e-198 697.2 895 61.0
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 7.2e-198 695.3 1050 59.4
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.2e-197 694.5 1036 57.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.1e-197 693.7 1036 57.7
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 3.6e-197 693.0 796 61.7
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 6.1e-197 692.2 1033 53.6
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 1.9e-195 687.2 889 65.4
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.5e-195 686.8 889 65.2
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 3.3e-195 686.4 882 66.2
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 7.4e-195 685.3 1029 59.0
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 9.7e-195 684.9 887 64.8
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.3e-194 684.5 1036 54.6
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 2.8e-194 683.3 899 64.3
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 4.8e-194 682.6 860 65.0
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.8e-194 682.6 899 64.2
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 4.1e-193 679.5 802 65.7
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 2.6e-192 676.8 1035 59.2
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.4e-192 676.4 908 63.3
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 4.5e-192 676.0 802 63.6
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.0e-191 674.9 909 63.0
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.3e-191 674.5 1047 57.8
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 2.2e-191 673.7 1034 57.6
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 3.8e-191 672.9 904 63.4
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 5.0e-191 672.5 907 62.3
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 8.5e-191 671.8 1037 58.2
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.9e-190 670.6 931 62.5
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.9e-190 670.6 884 63.0
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 2.5e-190 670.2 883 64.0
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 3.2e-190 669.8 854 63.9
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 4.2e-190 669.5 906 61.1
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 7.2e-190 668.7 904 64.2
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 9.4e-190 668.3 899 64.4
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.2e-189 667.9 884 63.8
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 1.6e-189 667.5 804 65.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 5.1e-188 662.5 1057 57.0
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 6.7e-188 662.1 898 63.9
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 1.1e-187 661.4 806 69.4
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 2.6e-187 660.2 812 68.1
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 3.3e-187 659.8 958 60.8
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 4.4e-187 659.4 892 63.6
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 5.7e-187 659.1 876 65.1
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 7.4e-187 658.7 831 63.1
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 9.7e-187 658.3 854 61.6
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 9.7e-187 658.3 854 61.6
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.7e-186 657.5 863 62.6
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 3.7e-186 656.4 886 63.3
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 6.3e-186 655.6 800 67.5
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 1.2e-184 651.4 1049 57.0
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 3.4e-184 649.8 906 58.8
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 1.3e-183 647.9 767 66.0
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 5.0e-183 646.0 816 65.6
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 8.5e-183 645.2 883 63.2
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 2.5e-182 643.7 852 64.6
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.5e-182 643.7 814 66.0
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.2e-181 641.3 803 63.6
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 7.9e-181 638.6 1034 56.1
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 1.8e-180 637.5 883 62.3
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.5e-179 634.4 877 63.6
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.5e-179 634.4 994 57.6
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.0e-179 634.0 1031 54.1
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 9.7e-179 631.7 920 60.4
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 9.7e-179 631.7 890 54.4
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.7e-178 630.9 889 62.9
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 2.2e-178 630.6 913 61.7
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.8e-177 627.5 909 61.4
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 7.0e-177 625.5 878 62.9
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 4.5e-176 622.9 822 65.1
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 4.5e-176 622.9 824 65.2
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 1.3e-175 621.3 885 62.0
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 2.9e-175 620.2 826 64.3
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.8e-175 619.8 902 56.7
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 1.1e-174 618.2 797 64.1
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.5e-171 607.8 878 62.2
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 3.3e-171 606.7 786 64.4
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 2.8e-170 603.6 919 59.6
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.7e-170 603.2 885 59.2
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 6.3e-170 602.4 897 58.9
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 1.8e-169 600.9 930 60.1
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 1.6e-168 597.8 724 66.9
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 2.7e-168 597.0 928 60.0
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 2.2e-167 594.0 883 61.8
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 1.5e-166 591.3 812 62.2
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 1.2e-165 588.2 907 56.3
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 6.8e-164 582.4 877 61.0
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 6.8e-164 582.4 951 58.5
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 8.8e-164 582.0 878 61.3
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 8.8e-164 582.0 883 61.3
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 8.8e-164 582.0 904 56.3
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.0e-163 580.9 1032 54.8
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 2.0e-163 580.9 879 61.0
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 3.4e-163 580.1 955 58.5
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 7.5e-163 578.9 812 63.7
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.7e-162 577.8 897 60.4
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 7.0e-161 572.4 1019 48.5
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.3e-159 567.4 805 60.0
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.3e-156 557.4 783 60.9
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 8.8e-156 555.4 789 62.4
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 9.8e-155 552.0 892 54.1
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.7e-154 551.2 956 53.3
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-152 544.7 878 53.2
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 5.9e-152 542.7 815 58.7
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 2.5e-150 537.3 878 52.7
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 2.5e-150 537.3 878 52.7
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 4.7e-149 533.1 819 52.9
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 2.3e-148 530.8 877 54.6
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 5.2e-148 529.6 904 55.1
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 3.4e-147 526.9 814 55.3
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.7e-144 517.3 810 59.3
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.7e-143 514.6 726 64.9
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 4.3e-142 510.0 796 54.8
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 8.0e-141 505.8 879 51.8
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 1.8e-140 504.6 879 52.0
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 2.0e-139 501.1 796 55.4
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 9.8e-139 498.8 801 60.0
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 5.0e-135 486.5 680 61.0
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 3.3e-134 483.8 796 53.5
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 9.5e-134 482.3 738 55.0
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.1e-129 466.8 902 50.2
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-126 458.8 834 48.9
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 1.5e-126 458.4 781 46.7
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 3.3e-126 457.2 680 64.9
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 8.1e-117 426.0 730 53.6
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.8e-116 424.9 989 44.3
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.4e-116 424.5 650 67.4
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 1.7e-114 418.3 790 49.7
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.7e-111 408.3 677 52.9
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.1e-109 401.4 820 52.4
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.4e-105 388.7 905 44.8
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 8.4e-98 362.8 429 56.6
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.1e-97 362.5 668 49.4
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 7.1e-97 359.8 400 71.8
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 9.0e-92 342.8 528 47.5
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.2e-91 342.4 399 59.1
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.5e-89 334.7 828 34.3
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 6.0e-88 330.1 645 53.5
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 7.9e-88 329.7 659 50.1
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 8.2e-85 319.7 642 62.1
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 1.5e-78 298.9 1289 28.2
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 9.7e-78 296.2 586 57.0
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 9.7e-70 269.6 223 64.6
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 3.4e-67 261.2 307 77.5
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 6.7e-63 246.9 262 61.8
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 1.5e-49 202.6 142 71.1
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 5.0e-42 177.6 357 37.8
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.3e-31 142.1 188 44.7
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 2.7e-27 128.6 79 78.5
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 2.5e-25 122.1 88 71.6
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.1e-23 116.7 122 54.1
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 6.6e-18 97.4 62 69.4
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 8.9e-15 87.0 166 39.8
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 4.9e-13 81.3 281 59.8
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 1.7e-10 72.8 188 31.9
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 4.3e-09 68.2 229 27.9
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 5.6e-09 67.8 56 57.1
Sc09g0009810 Simmondsia chinensis HOM05D003722 ORTHO05D004589 2.1e-08 65.9 166 28.3


User provided reference genes

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