Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 2.6e-295 1018.1 557 100.0
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.3e-153 547.4 522 65.7
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.1e-149 534.3 511 64.6
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.9e-137 493.0 498 62.0
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 2.1e-127 460.3 511 57.3
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 2.3e-126 456.8 500 59.0
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 2.9e-121 439.9 493 55.8
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 6.6e-121 438.7 525 53.3
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 8.6e-121 438.3 524 54.2
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 7.3e-120 435.3 503 54.5
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 1.4e-118 431.0 494 57.9
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.3e-118 430.3 497 55.5
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.0e-117 427.2 497 55.1
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 2.6e-117 426.8 509 53.4
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 3.4e-117 426.4 510 54.3
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 9.8e-117 424.9 509 52.7
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.7e-116 424.1 510 53.7
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.2e-116 423.7 488 55.7
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.1e-115 421.4 498 53.0
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.1e-115 421.4 505 53.5
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-115 421.4 499 55.3
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 2.4e-115 420.2 483 55.3
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.1e-115 419.5 491 53.2
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 1.7e-113 414.1 500 53.6
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 6.6e-113 412.1 500 54.6
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 8.6e-113 411.8 508 52.0
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-112 411.4 487 55.2
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 3.3e-112 409.8 492 53.0
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 1.6e-111 407.5 493 53.8
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 2.8e-111 406.8 512 53.3
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.8e-111 406.8 510 52.4
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 6.2e-111 405.6 491 52.3
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 6.8e-110 402.1 486 54.5
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.4e-109 399.4 516 50.8
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 4.9e-108 396.0 489 54.4
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 1.4e-107 394.4 515 51.8
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 3.2e-107 393.3 487 52.8
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 1.6e-106 391.0 496 51.4
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 6.0e-106 389.0 495 52.7
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 1.3e-105 387.9 489 52.8
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 1.7e-105 387.5 511 53.0
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 2.3e-105 387.1 499 50.9
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 3.9e-105 386.3 494 52.2
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 3.9e-105 386.3 491 52.5
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 5.0e-105 386.0 488 50.8
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 5.0e-105 386.0 488 50.8
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.5e-104 384.4 510 50.8
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 3.3e-104 383.3 493 54.0
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 4.3e-104 382.9 491 51.5
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 7.3e-104 382.1 490 52.4
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 1.2e-103 381.3 487 52.2
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 3.6e-103 379.8 490 51.0
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 3.6e-103 379.8 500 50.6
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 3.6e-103 379.8 500 50.6
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 1.1e-102 378.3 485 50.9
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.8e-102 377.5 492 52.2
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 4.0e-102 376.3 491 50.9
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 8.9e-102 375.2 528 48.7
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 1.5e-101 374.4 489 51.1
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.6e-101 373.6 499 49.9
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.3e-100 371.3 495 52.3
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.2e-100 370.5 500 51.2
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 2.9e-100 370.2 487 52.2
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 1.1e-99 368.2 490 48.6
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 7.1e-99 365.5 462 51.5
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 1.2e-98 364.8 480 49.6
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.3e-97 360.5 650 42.3
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 3.3e-96 356.7 504 49.0
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 3.3e-96 356.7 503 48.3
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 1.2e-95 354.8 483 49.5
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 3.6e-95 353.2 480 49.6
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.4e-94 351.3 500 48.8
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 1.5e-93 347.8 494 48.0
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 9.9e-93 345.1 495 48.7
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.3e-92 344.7 403 55.6
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 2.9e-92 343.6 484 49.0
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 6.4e-92 342.4 495 48.7
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 1.1e-91 341.7 502 48.0
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 1.4e-91 341.3 374 57.5
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 4.1e-91 339.7 373 56.6
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.7e-89 334.3 499 47.7
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 1.2e-87 328.2 563 42.5
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 4.7e-87 326.2 483 48.4
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.4e-86 324.7 486 47.9
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 4.4e-85 319.7 320 59.1
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 7.6e-85 318.9 363 54.8
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 2.9e-84 317.0 484 44.2
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 4.2e-83 313.2 489 45.2
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 9.3e-83 312.0 363 54.3
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.3e-81 308.1 484 46.3
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 6.9e-78 295.8 485 44.1
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 3.4e-77 293.5 361 52.9
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 1.3e-76 291.6 494 44.3
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.7e-76 291.2 350 55.7
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 1.7e-76 291.2 492 44.3
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 7.1e-75 285.8 343 52.8
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.3e-73 281.6 383 49.3
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 4.8e-71 273.1 353 50.4
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.5e-69 268.1 349 49.0
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.2e-68 264.2 355 50.7
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 9.3e-67 258.8 192 74.0
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.7e-66 257.3 202 74.8
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 4.8e-63 246.5 491 40.9
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 1.7e-60 238.0 300 53.0
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 3.8e-60 236.9 484 37.8
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 1.6e-55 221.5 284 51.8
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 5.0e-52 209.9 380 42.6
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 5.5e-51 206.5 296 42.9
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.6e-47 194.9 373 41.0
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 5.5e-43 179.9 289 39.4
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 3.4e-37 160.6 543 30.6
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.0e-33 149.1 395 34.7
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 1.4e-33 148.7 124 66.9
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 2.0e-32 144.8 258 40.7
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 2.7e-26 124.4 179 49.2
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 6.1e-26 123.2 179 48.6
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 7.5e-24 116.3 218 41.7
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 2.2e-20 104.8 130 53.1
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 8.8e-17 92.8 368 28.5
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 5.7e-16 90.1 134 44.8
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 5.7e-16 90.1 134 44.8
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 6.3e-15 86.7 391 30.4
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 1.2e-13 82.4 183 37.7
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 1.5e-11 75.5 56 73.2
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.5e-11 75.5 230 32.6
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.9e-11 75.1 62 61.3
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 4.4e-08 63.9 50 66.0
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.4e-06 58.9 53 56.6
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 5.4e-06 57.0 157 30.6


User provided reference genes

Program Settings