Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 3.0e-180 635.2 345 100.0
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 1.8e-97 360.1 362 57.5
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 3.7e-82 309.3 372 49.5
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 4.9e-82 308.9 371 52.8
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 8.3e-82 308.1 353 52.7
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.6e-80 303.9 372 50.0
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 6.6e-79 298.5 371 50.1
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 1.1e-78 297.7 364 49.7
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 3.3e-78 296.2 365 52.1
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 7.3e-78 295.0 374 51.3
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.2e-77 294.3 357 47.9
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.6e-77 293.9 366 49.2
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 2.8e-77 293.1 347 55.3
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 4.7e-77 292.4 361 48.5
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 6.1e-77 292.0 368 50.8
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 1.0e-76 291.2 356 54.2
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 1.0e-76 291.2 400 45.2
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 4.0e-76 289.3 359 53.2
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 1.2e-75 287.7 346 49.7
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 2.0e-75 287.0 367 48.2
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 4.4e-75 285.8 346 53.2
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 4.4e-75 285.8 348 52.6
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 5.7e-75 285.4 374 51.9
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 7.5e-75 285.0 376 47.3
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 2.2e-74 283.5 346 50.6
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 2.9e-74 283.1 370 47.6
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 2.9e-74 283.1 349 49.3
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 8.3e-74 281.6 367 52.0
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 1.8e-73 280.4 346 51.7
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 1.8e-73 280.4 363 52.3
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 2.4e-73 280.0 355 53.2
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.2e-72 277.7 343 49.0
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 2.7e-72 276.6 362 48.1
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 2.7e-72 276.6 376 48.7
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 7.8e-72 275.0 357 51.3
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 7.8e-72 275.0 357 51.3
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 3.9e-71 272.7 362 47.8
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.1e-70 271.2 211 70.1
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.1e-70 271.2 361 47.9
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.5e-70 270.8 360 47.8
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.5e-70 270.8 361 48.5
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 4.3e-70 269.2 363 46.0
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 5.6e-70 268.9 353 47.9
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 5.6e-70 268.9 384 47.4
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 7.3e-70 268.5 380 46.8
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 7.3e-70 268.5 343 54.5
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 2.1e-69 266.9 368 44.3
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 3.6e-69 266.2 366 48.4
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 4.7e-69 265.8 356 48.3
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 4.7e-69 265.8 356 48.3
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 4.7e-69 265.8 356 48.3
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.1e-68 264.6 354 46.9
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 6.8e-68 261.9 376 46.3
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 1.5e-67 260.8 352 51.7
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 1.5e-67 260.8 366 45.9
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 2.6e-67 260.0 350 48.6
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 5.8e-67 258.8 371 46.6
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 7.5e-67 258.5 346 42.5
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 9.8e-67 258.1 367 44.7
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 1.7e-66 257.3 359 51.3
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 2.9e-66 256.5 381 47.0
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 1.1e-65 254.6 367 46.3
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 1.6e-64 250.8 370 44.1
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 3.5e-64 249.6 363 46.6
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 3.5e-64 249.6 351 47.9
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 4.6e-64 249.2 351 49.6
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 4.6e-64 249.2 373 44.0
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 7.8e-64 248.4 353 46.2
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 7.8e-64 248.4 345 47.0
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 5.0e-63 245.7 342 49.1
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 2.8e-61 240.0 359 48.7
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 3.6e-61 239.6 353 47.6
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.2e-61 238.8 336 49.7
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 1.8e-60 237.3 272 51.1
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.8e-60 237.3 336 53.6
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 4.0e-60 236.1 331 45.0
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 6.8e-60 235.3 343 44.9
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 1.2e-59 234.6 372 44.6
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 1.5e-59 234.2 363 46.0
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 2.0e-59 233.8 329 46.2
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 3.4e-59 233.0 370 43.8
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 5.8e-59 232.3 344 45.6
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 7.5e-59 231.9 343 49.0
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 9.9e-59 231.5 362 47.2
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 1.3e-58 231.1 333 46.5
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 2.2e-58 230.3 342 47.1
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.9e-58 229.9 348 48.6
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 2.9e-58 229.9 351 44.2
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 4.9e-58 229.2 336 48.2
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 6.4e-58 228.8 353 49.3
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 2.4e-57 226.9 354 42.4
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 4.1e-57 226.1 357 43.1
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 4.1e-57 226.1 355 42.0
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 4.1e-57 226.1 314 44.6
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 5.4e-57 225.7 373 41.6
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 5.4e-57 225.7 356 46.3
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 7.1e-57 225.3 343 47.8
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 2.1e-56 223.8 352 42.0
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 2.1e-56 223.8 371 46.6
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.7e-56 223.4 331 47.4
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 4.6e-56 222.6 352 41.5
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 4.6e-56 222.6 352 42.0
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 4.6e-56 222.6 290 45.5
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 6.0e-56 222.2 348 48.3
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 2.3e-55 220.3 342 47.4
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 5.1e-55 219.2 350 47.4
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.6e-55 218.8 349 44.7
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 3.3e-54 216.5 348 47.7
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 3.3e-54 216.5 348 47.7
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 3.3e-54 216.5 348 47.7
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 4.3e-54 216.1 377 42.7
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 7.3e-54 215.3 347 48.4
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 7.3e-54 215.3 355 41.1
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 1.6e-53 214.2 345 46.4
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 3.6e-53 213.0 351 42.5
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 3.6e-53 213.0 356 41.6
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 6.2e-53 212.2 356 39.9
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.2e-53 212.2 342 43.0
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 8.1e-53 211.8 377 42.4
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 2.4e-52 210.3 377 44.6
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 2.4e-52 210.3 377 44.6
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 2.4e-52 210.3 377 44.6
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 6.8e-52 208.8 293 48.8
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 6.8e-52 208.8 349 43.0
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 4.4e-51 206.1 349 43.0
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 5.8e-51 205.7 356 42.7
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 5.8e-51 205.7 366 42.6
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 2.2e-50 203.8 362 43.4
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 2.9e-50 203.4 328 41.8
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 1.9e-49 200.7 329 47.4
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 9.2e-49 198.4 361 41.8
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 1.6e-48 197.6 306 46.4
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.7e-48 196.8 359 44.6
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 4.6e-48 196.1 349 41.8
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 1.0e-47 194.9 354 40.4
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 2.3e-47 193.7 356 39.3
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 5.1e-47 192.6 354 42.7
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-46 191.4 354 41.8
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 6.2e-45 185.7 229 49.3
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 1.1e-44 184.9 274 40.5
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 1.1e-41 174.9 241 51.5
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 3.5e-40 169.9 338 39.3
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 4.6e-40 169.5 355 38.6
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.3e-39 167.9 363 39.4
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 3.9e-39 166.4 358 33.2
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 8.7e-39 165.2 338 39.3
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 1.9e-38 164.1 294 38.4
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 1.8e-36 157.5 423 34.8
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.8e-36 157.5 413 33.9
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 5.3e-36 156.0 338 37.9
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 9.0e-36 155.2 338 37.0
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 3.4e-35 153.3 352 38.4
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 9.9e-35 151.8 353 34.6
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.7e-34 151.0 332 38.3
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 2.4e-33 147.1 329 34.3
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 3.2e-33 146.7 271 39.1
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 5.4e-33 146.0 346 34.7
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 3.5e-32 143.3 338 34.3
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 3.9e-31 139.8 372 32.5
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 6.7e-31 139.0 321 38.6
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 1.6e-29 134.4 262 38.2
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 8.1e-29 132.1 358 32.7
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 8.4e-26 122.1 167 47.9
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 6.7e-23 112.5 347 32.3
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.3e-18 98.2 351 34.8
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 1.7e-18 97.8 109 52.3
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 7.9e-16 89.0 203 31.0
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 8.7e-15 85.5 181 38.1
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.9e-14 84.3 176 36.4
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.1e-09 68.6 306 26.8
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 9.3e-09 65.5 276 25.7
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 2.7e-08 63.9 239 27.2
C08p21440 Brassica napus HOM05D003923 ORTHO05D004553 7.9e-08 62.4 59 59.3
BolC8t49783H Brassica oleracea HOM05D003923 ORTHO05D004553 7.9e-08 62.4 59 59.3
Gohir.D13G152264 Gossypium hirsutum HOM05D004118 ORTHO05D004686 7.4e-06 55.8 333 24.3


User provided reference genes

Program Settings