Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 6.6e-235 817.0 413 100.0
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 3.6e-201 704.9 413 85.0
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.6e-188 661.4 413 79.2
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 4.6e-188 661.4 413 81.6
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 5.6e-186 654.4 412 78.2
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 6.2e-185 651.0 413 76.5
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 4.0e-184 648.3 413 75.5
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 4.5e-183 644.8 413 75.5
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.3e-182 643.3 413 76.5
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 2.2e-182 642.5 412 77.7
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 1.4e-181 639.8 409 75.6
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 1.4e-181 639.8 410 76.1
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.9e-181 639.4 409 75.3
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.2e-181 638.3 409 75.6
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.2e-180 636.7 409 75.1
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 1.2e-180 636.7 414 74.9
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 7.9e-180 634.0 409 74.8
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 1.0e-179 633.6 413 75.3
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.0e-179 633.6 410 75.4
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 2.3e-179 632.5 410 75.1
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 3.9e-179 631.7 414 73.9
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.5e-178 629.8 415 74.7
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 1.9e-178 629.4 416 76.4
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 7.4e-178 627.5 415 75.4
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 7.4e-178 627.5 413 74.3
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 9.6e-178 627.1 409 75.3
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 9.6e-178 627.1 413 74.6
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 1.6e-177 626.3 414 73.7
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 2.8e-177 625.5 412 72.6
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 2.8e-177 625.5 413 73.6
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 3.7e-177 625.2 410 73.9
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 8.2e-177 624.0 413 73.6
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 8.2e-177 624.0 414 74.2
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.4e-176 623.2 415 74.2
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 1.4e-176 623.2 413 73.4
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 2.4e-176 622.5 413 73.1
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.4e-176 622.5 415 74.0
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 1.2e-175 620.2 410 74.4
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 2.0e-175 619.4 413 73.8
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 2.0e-175 619.4 418 75.1
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 2.0e-175 619.4 411 73.0
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.6e-175 619.0 415 73.7
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 4.5e-175 618.2 413 72.4
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 5.8e-175 617.8 413 74.6
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 5.8e-175 617.8 413 73.6
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 7.6e-175 617.5 410 72.9
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 2.9e-174 615.5 414 73.4
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 2.9e-174 615.5 414 73.9
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 5.0e-174 614.8 416 74.0
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 5.0e-174 614.8 446 70.4
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 6.5e-174 614.4 414 74.4
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.9e-173 612.8 414 72.2
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.5e-173 612.5 409 72.4
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 7.2e-173 610.9 414 72.5
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 9.3e-173 610.5 416 73.3
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 9.3e-173 610.5 480 66.2
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 1.6e-172 609.8 415 73.3
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 2.1e-172 609.4 414 72.0
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 3.5e-172 608.6 411 71.8
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 4.6e-172 608.2 417 73.1
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 6.1e-172 607.8 413 72.9
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 7.9e-172 607.4 416 72.8
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 7.9e-172 607.4 414 72.9
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-171 606.7 414 71.7
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 1.3e-171 606.7 414 72.0
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 1.8e-171 606.3 411 72.7
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 1.8e-171 606.3 413 71.4
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 2.3e-171 605.9 417 71.7
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 3.0e-171 605.5 417 71.7
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 3.0e-171 605.5 414 72.0
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 5.1e-171 604.7 416 71.9
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 6.7e-171 604.4 413 70.9
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 8.7e-171 604.0 414 71.3
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 8.7e-171 604.0 413 72.4
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 1.1e-170 603.6 413 71.7
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 1.1e-170 603.6 413 72.4
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.9e-170 602.8 414 71.3
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 4.3e-170 601.7 414 72.9
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 4.3e-170 601.7 414 71.3
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 2.8e-169 599.0 376 78.7
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 8.2e-169 597.4 415 72.5
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 1.4e-168 596.7 414 70.3
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 1.8e-168 596.3 509 62.3
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 1.8e-168 596.3 414 70.8
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 2.4e-168 595.9 456 67.3
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.1e-168 595.5 413 72.2
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 1.2e-167 593.6 418 71.3
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 2.6e-167 592.4 415 72.3
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 1.3e-166 590.1 414 70.0
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 2.2e-166 589.3 413 69.2
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 2.2e-166 589.3 414 70.0
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.1e-165 587.0 414 71.0
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 1.1e-165 587.0 413 71.7
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.2e-165 585.5 411 70.3
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 7.2e-165 584.3 416 70.4
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 7.2e-165 584.3 413 69.2
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 9.4e-165 583.9 414 69.8
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 9.4e-165 583.9 414 68.6
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 9.4e-165 583.9 413 68.8
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 2.7e-164 582.4 414 68.4
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 6.1e-164 581.3 414 68.6
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 6.1e-164 581.3 414 68.6
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.4e-163 580.1 413 69.2
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 6.7e-163 577.8 414 68.4
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 1.1e-162 577.0 414 68.8
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 1.5e-162 576.6 416 69.7
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 2.5e-162 575.9 412 68.7
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 3.3e-162 575.5 414 68.4
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.7e-162 574.7 410 69.3
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.2e-159 567.0 414 67.4
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 2.5e-157 559.3 404 70.5
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 3.0e-155 552.4 465 61.9
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 3.3e-154 548.9 418 65.1
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 1.7e-153 546.6 421 67.7
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 1.6e-151 540.0 410 66.6
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 1.1e-149 533.9 429 62.5
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 3.6e-148 528.9 351 74.1
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 1.5e-138 496.9 410 61.0
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 2.8e-137 492.7 411 59.1
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 1.3e-134 483.8 330 71.2
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.5e-133 480.3 307 74.9
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 3.6e-132 475.7 351 68.9
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 2.0e-130 469.9 342 69.9
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.4e-128 463.8 410 55.6
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 2.8e-124 449.5 335 69.0
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 8.0e-124 448.0 417 56.6
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 1.7e-121 440.3 418 56.0
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 5.9e-119 431.8 418 54.8
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.3e-101 372.9 235 75.7
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 1.1e-96 357.8 244 72.5
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 9.0e-83 311.6 432 43.5
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.9e-73 280.0 181 74.6
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 3.2e-72 276.6 393 42.7
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 5.3e-67 259.2 237 56.1
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 3.7e-60 236.5 328 42.7
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 5.3e-51 206.1 188 61.2
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 7.4e-45 185.7 115 78.3
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 6.5e-41 172.6 241 44.8
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 1.5e-37 161.4 125 62.4
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 9.7e-37 158.7 220 41.8
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 2.8e-28 130.6 105 60.0
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 5.3e-27 126.3 80 72.5
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 4.5e-26 123.2 83 68.7
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.0e-25 122.1 90 64.4
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.0e-22 112.1 84 64.3
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 4.8e-20 103.2 86 61.6
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 4.8e-20 103.2 86 61.6
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 8.3e-20 102.4 184 39.7
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 8.3e-20 102.4 81 61.7
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 1.4e-19 101.7 74 63.5
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 1.4e-19 101.7 74 63.5
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 1.6e-18 98.2 74 62.2
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 2.0e-18 97.8 86 60.5
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 7.7e-18 95.9 73 61.6
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 1.0e-14 85.5 66 59.1
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 2.2e-12 77.8 59 62.7
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 3.1e-11 73.9 65 52.3
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 7.8e-10 69.3 86 45.3
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 2.5e-08 64.3 115 38.3
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 3.3e-08 63.9 115 37.4
A09p54850 Brassica napus HOM05D004491 ORTHO05D102086 1.8e-06 58.2 125 35.2


User provided reference genes

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