Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G1486 Erigeron canadensis HOM05D004611 ORTHO05D005794 0.0e+00 2057.7 1107 100.0
Lsat_1_v5_gn_1_40220 Lactuca sativa HOM05D004611 ORTHO05D005794 0.0e+00 1604.3 1144 78.5
HanXRQChr11g0353941 Helianthus annuus HOM05D004611 ORTHO05D005794 0.0e+00 1589.3 1152 77.8
CSS0006805 Camellia sinensis var. sinensis HOM05D004611 ORTHO05D005794 0.0e+00 1431.4 1144 70.3
vmacro15164 Vaccinium macrocarpon HOM05D004611 ORTHO05D005794 0.0e+00 1409.0 1152 69.4
Rhsim02G0001700 Rhododendron simsii HOM05D004611 ORTHO05D005794 0.0e+00 1408.7 1151 69.2
Actinidia02513 Actinidia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1408.3 1158 68.8
Lj6A696G31 Lonicera japonica HOM05D004611 ORTHO05D005794 0.0e+00 1408.3 1162 67.1
DCAR_030442 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1376.7 1145 67.4
QL06p013322 Quercus lobata HOM05D004611 ORTHO05D005794 0.0e+00 1357.0 1151 67.0
Lalb_Chr18g0058501 Lupinus albus HOM05D004611 ORTHO05D005794 0.0e+00 1354.7 1135 68.4
Lj6g0013514 Lotus japonicus HOM05D004611 ORTHO05D005794 0.0e+00 1352.0 1136 67.1
Nitab4.5_0000062g0520 Nicotiana tabacum HOM05D004611 ORTHO05D005794 0.0e+00 1352.0 1150 67.6
Cfa015689 Carpinus fangiana HOM05D004611 ORTHO05D005794 0.0e+00 1350.1 1147 65.6
CiPaw.02G072100 Carya illinoinensis HOM05D004611 ORTHO05D005794 0.0e+00 1350.1 1156 66.1
PSO541G3737 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1345.1 1148 66.8
Phvul.006G121000 Phaseolus vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1343.9 1144 66.4
Glyma.15G136900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1343.6 1151 66.9
Nn8g40813 Nelumbo nucifera HOM05D004611 ORTHO05D005794 0.0e+00 1343.2 1155 65.5
Ca_00946_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1341.3 1138 66.9
Ca_00952_v3 Cicer arietinum L. HOM05D004611 ORTHO05D005794 0.0e+00 1341.3 1138 66.9
Glyma.09G031900 Glycine max HOM05D004611 ORTHO05D005794 0.0e+00 1340.5 1148 65.2
COL.COLO4_34558 Corchorus olitorius HOM05D004611 ORTHO05D005794 0.0e+00 1339.3 1140 67.2
PSO675G3276 Papaver somniferum HOM05D004611 ORTHO05D005794 0.0e+00 1339.3 1148 66.8
Prupe.1G111500 Prunus persica HOM05D004611 ORTHO05D005794 0.0e+00 1337.4 1154 65.1
Thecc.04G307400 Theobroma cacao HOM05D004611 ORTHO05D005794 0.0e+00 1334.7 1143 66.9
Psat1g162720 Pisum sativum HOM05D004611 ORTHO05D005794 0.0e+00 1333.9 1148 66.2
Potri.008G101200 Populus trichocarpa HOM05D004611 ORTHO05D005794 0.0e+00 1331.2 1157 63.5
ClCG06G004360 Citrullus lanatus HOM05D004611 ORTHO05D005794 0.0e+00 1330.9 1140 66.1
Migut.N00024 Erythranthe guttata HOM05D004611 ORTHO05D005794 0.0e+00 1330.9 1134 67.4
PGR004G0015 Punica granatum HOM05D004611 ORTHO05D005794 0.0e+00 1330.1 1134 64.5
Gohir.D02G061400 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1329.7 1144 67.1
Ciclev10004185m.g Citrus clementina HOM05D004611 ORTHO05D005794 0.0e+00 1329.3 1173 65.9
Manes.03G208700 Manihot esculenta HOM05D004611 ORTHO05D005794 0.0e+00 1328.9 1155 64.8
arahy.Tifrunner.gnm1.ann1.VX19JK Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1328.2 1134 65.2
arahy.Tifrunner.gnm1.ann1.J0E0JD Arachis hypogaea HOM05D004611 ORTHO05D005794 0.0e+00 1327.0 1145 64.6
Eucgr.H04083 Eucalyptus grandis HOM05D004611 ORTHO05D005794 0.0e+00 1327.0 1149 65.4
MELO3C021251.2 Cucumis melo HOM05D004611 ORTHO05D005794 0.0e+00 1326.6 1138 68.0
Gorai.005G069100 Gossypium raimondii HOM05D004611 ORTHO05D005794 0.0e+00 1326.2 1142 67.2
CANSAT78G0742 Cannabis sativa HOM05D004611 ORTHO05D005794 0.0e+00 1325.8 1174 65.4
Sabra08G0076500 Salix brachista HOM05D004611 ORTHO05D005794 0.0e+00 1324.7 1142 63.4
Aqoxy2G02628 Aquilegia oxysepala HOM05D004611 ORTHO05D005794 0.0e+00 1323.9 1184 63.9
Cc03_g00470 Coffea canephora HOM05D004611 ORTHO05D005794 0.0e+00 1323.5 1132 66.2
Carub.0008s0980 Capsella rubella HOM05D004611 ORTHO05D005794 0.0e+00 1323.1 1123 67.1
THA.LOC104818864 Tarenaya hassleriana HOM05D004611 ORTHO05D005794 0.0e+00 1322.4 1119 67.8
Gohir.A02G056200 Gossypium hirsutum HOM05D004611 ORTHO05D005794 0.0e+00 1321.2 1147 64.8
CsaV3_6G000020 Cucumis sativus L. HOM05D004611 ORTHO05D005794 0.0e+00 1320.8 1141 67.5
AL8G23880 Arabidopsis lyrata HOM05D004611 ORTHO05D005794 0.0e+00 1320.1 1119 67.1
AT5G49930 Arabidopsis thaliana HOM05D004611 ORTHO05D005794 0.0e+00 1319.3 1128 66.7
CARHR258790 Cardamine hirsuta HOM05D004611 ORTHO05D005794 0.0e+00 1318.5 1120 67.1
MSTRG.21753 Avicennia marina HOM05D004611 ORTHO05D005794 0.0e+00 1317.4 1145 66.7
TWI73G0848 Tripterygium wilfordii HOM05D004611 ORTHO05D005794 0.0e+00 1317.0 1134 63.9
VMungo0540G0237 Vigna mungo HOM05D004611 ORTHO05D005794 0.0e+00 1317.0 1142 66.5
GSVIVG01034941001 Vitis vinifera HOM05D004611 ORTHO05D005794 0.0e+00 1317.0 1113 67.6
Sed0020756 Sechium edule HOM05D004611 ORTHO05D005794 0.0e+00 1315.1 1148 64.0
MD16G1147800 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1314.7 1186 62.5
BcaC01g04844 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1314.3 1132 66.3
AUR62030016 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1314.3 1150 63.7
Duzib151G0109 Durio zibethinus HOM05D004611 ORTHO05D005794 0.0e+00 1313.5 1151 65.9
MD13G1148000 Malus domestica HOM05D004611 ORTHO05D005794 0.0e+00 1313.5 1181 62.2
RcHm_v2.0_Chr4g0426211 Rosa chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1313.5 1151 63.4
BcaB01g02933 Brassica carinata HOM05D004611 ORTHO05D005794 0.0e+00 1313.1 1135 66.6
C03p33270 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1311.2 1132 66.3
Atru.chr4.3104 Acer truncatum HOM05D004611 ORTHO05D005794 0.0e+00 1310.0 1146 66.5
CAN.G179.3 Capsicum annuum HOM05D004611 ORTHO05D005794 0.0e+00 1309.3 1155 65.5
BraA03t11969Z Brassica rapa HOM05D004611 ORTHO05D005794 0.0e+00 1307.7 1143 65.6
A03p27560 Brassica napus HOM05D004611 ORTHO05D005794 0.0e+00 1305.0 1135 65.9
BolC3t15649H Brassica oleracea HOM05D004611 ORTHO05D005794 0.0e+00 1305.0 1134 65.9
DCAR_002526 Daucus carota HOM05D004611 ORTHO05D005794 0.0e+00 1302.0 1165 62.9
Sp6g11490 Schrenkiella parvula HOM05D004611 ORTHO05D005794 0.0e+00 1302.0 1147 65.6
Thhalv10012510m.g Eutrema salsugineum HOM05D004611 ORTHO05D005794 0.0e+00 1300.4 1144 65.8
FvH4_4g20770 Fragaria vesca HOM05D004611 ORTHO05D005794 0.0e+00 1298.5 1143 63.3
Aa31LG3G6800 Aethionema arabicum HOM05D004611 ORTHO05D005794 0.0e+00 1294.6 1123 65.6
ATR0693G069 Amborella trichopoda HOM05D004611 ORTHO05D005794 0.0e+00 1290.4 1126 65.5
FAN07G0444 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1284.2 1184 60.8
Ah.07g203900 Amaranthus hybridus HOM05D004611 ORTHO05D005794 0.0e+00 1277.7 1151 64.0
FAN12G0652 Fragaria x ananassa HOM05D004611 ORTHO05D005794 0.0e+00 1277.7 1184 61.1
SGA_v2.0_scaffold123G33405 Striga asiatica HOM05D004611 ORTHO05D005794 0.0e+00 1273.8 1198 61.4
Sc25g0001590 Simmondsia chinensis HOM05D004611 ORTHO05D005794 0.0e+00 1270.0 1115 65.5
MBI19_g32689_MAGBIO Magnolia biondii HOM05D004611 ORTHO05D005794 0.0e+00 1262.3 1160 63.4
AUR62002591 Chenopodium quinoa HOM05D004611 ORTHO05D005794 0.0e+00 1253.4 1145 61.7
Haze_00831 Corylus avellana HOM05D004611 ORTHO05D005794 0.0e+00 1250.3 1162 61.3
Os12g0564600 Oryza sativa ssp. japonica HOM05D004611 ORTHO05D005794 0.0e+00 1239.9 1166 61.4
TPR.G10113 Trifolium pratense HOM05D004611 ORTHO05D005794 0.0e+00 1228.0 1128 63.0
Zm00001eb136770 Zea mays HOM05D004611 ORTHO05D005794 0.0e+00 1216.8 1208 59.7
EL10Ac3g06291 Beta vulgaris HOM05D004611 ORTHO05D005794 0.0e+00 1211.1 1162 59.9
TAR362G1323 Trochodendron aralioides HOM05D004611 ORTHO05D005794 0.0e+00 1102.0 943 67.2
Dinv15127 Davidia involucrata HOM05D004611 ORTHO05D005794 0.0e+00 1092.0 888 69.5
Mapoly0029s0152 Marchantia polymorpha HOM05D004611 ORTHO05D005794 0.0e+00 1077.0 1223 53.6
Pp3c6_29680 Physcomitrium patens HOM05D004611 ORTHO05D005794 0.0e+00 1077.0 1237 51.8
AagrBONN_evm.TU.Sc2ySwM_344.977 Anthoceros agrestis HOM05D004611 ORTHO05D005794 7.6e-312 1073.5 1197 53.4
Nitab4.5_0003678g0010 Nicotiana tabacum HOM05D004611 ORTHO05D005794 2.6e-302 1042.3 1032 61.2
SMO356G0321 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.0e-290 1001.5 1127 54.5
CDE02G0179 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 4.0e-287 991.9 735 70.1
FAN17G1213 Fragaria x ananassa HOM05D004611 ORTHO05D005794 2.8e-264 916.0 915 58.0
GSVIVG01017617001 Vitis vinifera HOM05D004611 ORTHO05D005794 1.1e-244 850.9 725 63.9
CBR_g49302 Chara braunii HOM05D004611 ORTHO05D005794 2.6e-238 829.7 1396 40.2
Solyc01g057850.4 Solanum lycopersicum HOM05D004611 ORTHO05D005794 2.0e-230 803.5 588 76.0
Peaxi162Scf00126g01513 Petunia axillaris HOM05D004611 ORTHO05D005794 2.1e-227 793.5 591 72.8
Oeu045272.1 Olea europaea HOM05D004611 ORTHO05D005794 4.7e-203 712.6 499 75.8
PGSC0003DMG401001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 3.4e-201 706.4 518 73.0
Sopen01g023180 Solanum pennellii HOM05D004611 ORTHO05D005794 7.5e-201 705.3 518 73.0
unitig_746.g26903 Utricularia gibba HOM05D004611 ORTHO05D005794 3.5e-198 696.4 615 63.1
Sopen01g023170 Solanum pennellii HOM05D004611 ORTHO05D005794 9.2e-183 645.2 614 59.6
Oeu045271.1 Olea europaea HOM05D004611 ORTHO05D005794 1.3e-173 614.8 590 59.2
PRCOL_00000926 Prasinoderma coloniale HOM05D004611 ORTHO05D005794 1.5e-169 601.3 1142 37.6
HPP92_010928 Vanilla planifolia HOM05D004611 ORTHO05D005794 1.4e-159 568.2 571 59.2
Solyc01g057840.3 Solanum lycopersicum HOM05D004611 ORTHO05D005794 7.8e-150 535.8 555 55.1
PGSC0003DMG402001235 Solanum tuberosum HOM05D004611 ORTHO05D005794 1.3e-144 518.5 541 55.8
HPP92_010927 Vanilla planifolia HOM05D004611 ORTHO05D005794 5.6e-132 476.5 389 64.5
Actinidia14243 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.4e-127 461.8 459 59.0
Peaxi162Scf00126g01512 Petunia axillaris HOM05D004611 ORTHO05D005794 4.5e-121 440.3 542 49.3
MCO13G239 Micromonas commoda HOM05D004611 ORTHO05D005794 5.0e-112 410.2 764 35.5
Cpa.g.sc146.72 Carica papaya HOM05D004611 ORTHO05D005794 1.4e-111 408.7 314 68.8
GSVIVG01017631001 Vitis vinifera HOM05D004611 ORTHO05D005794 5.9e-105 386.7 300 71.0
SEGI_12646 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 3.8e-104 384.0 539 46.9
unitig_746.g26902 Utricularia gibba HOM05D004611 ORTHO05D005794 8.8e-101 372.9 466 49.8
Cfa025106 Carpinus fangiana HOM05D004611 ORTHO05D005794 1.7e-88 332.0 1157 28.3
SEGI_02813 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.5e-87 328.9 358 52.5
GSVIVG01017613001 Vitis vinifera HOM05D004611 ORTHO05D005794 2.3e-85 321.6 389 49.4
GSVIVG01017626001 Vitis vinifera HOM05D004611 ORTHO05D005794 4.0e-85 320.9 371 52.3
Cre17.g734961 Chlamydomonas reinhardtii HOM05D004611 ORTHO05D005794 9.8e-76 289.7 257 56.0
arahy.Tifrunner.gnm1.ann1.JPBR4U Arachis hypogaea HOM05D004611 ORTHO05D005794 2.7e-73 281.6 225 68.9
Lsat_1_v5_gn_5_111761 Lactuca sativa HOM05D004611 ORTHO05D029976 6.6e-72 276.9 372 49.2
Lsat_1_v5_gn_3_85221 Lactuca sativa HOM05D004611 ORTHO05D029976 2.8e-70 271.6 372 48.9
Lsat_1_v5_gn_1_27520 Lactuca sativa HOM05D004611 ORTHO05D029976 2.3e-69 268.5 372 48.4
Lsat_1_v5_gn_2_109460 Lactuca sativa HOM05D004611 ORTHO05D029976 2.0e-68 265.4 372 48.1
Oeu046590.2 Olea europaea HOM05D004611 ORTHO05D005794 4.4e-68 264.2 421 46.1
CDE02G2799 Ceratophyllum demersum HOM05D004611 ORTHO05D005794 8.3e-67 260.0 249 57.8
arahy.Tifrunner.gnm1.ann1.PAF7VJ Arachis hypogaea HOM05D004611 ORTHO05D005794 6.6e-64 250.4 149 87.2
SEGI_18823 Sequoiadendron giganteum HOM05D004611 ORTHO05D005794 1.1e-63 249.6 147 85.0
TAR362G0625 Trochodendron aralioides HOM05D004611 ORTHO05D005794 1.1e-63 249.6 214 62.6
GSVIVG01017633001 Vitis vinifera HOM05D004611 ORTHO05D005794 9.2e-58 229.9 184 63.0
Cpa.g.sc146.70 Carica papaya HOM05D004611 ORTHO05D005794 8.6e-56 223.4 242 55.0
Actinidia07517 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.2e-49 203.0 106 96.2
arahy.Tifrunner.gnm1.ann1.MSK2EL Arachis hypogaea HOM05D004611 ORTHO05D005794 7.8e-49 200.3 113 89.4
arahy.Tifrunner.gnm1.ann1.631YT7 Arachis hypogaea HOM05D004611 ORTHO05D005794 2.8e-46 191.8 111 87.4
arahy.Tifrunner.gnm1.ann1.N4MQ0H Arachis hypogaea HOM05D004611 ORTHO05D005794 4.7e-46 191.0 113 85.8
arahy.Tifrunner.gnm1.ann1.G1FZ3Z Arachis hypogaea HOM05D004611 ORTHO05D005794 1.2e-44 186.4 113 84.1
arahy.Tifrunner.gnm1.ann1.80REVR Arachis hypogaea HOM05D004611 ORTHO05D005794 1.5e-44 186.0 113 84.1
SMO356G0537 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.4e-42 177.6 583 28.8
Actinidia07518 Actinidia chinensis HOM05D004611 ORTHO05D005794 2.1e-41 175.6 194 49.5
arahy.Tifrunner.gnm1.ann1.KEPZ3C Arachis hypogaea HOM05D004611 ORTHO05D005794 2.7e-41 175.3 109 83.5
arahy.Tifrunner.gnm1.ann1.F9ANIH Arachis hypogaea HOM05D004611 ORTHO05D005794 3.5e-41 174.9 106 86.8
arahy.Tifrunner.gnm1.ann1.LTB099 Arachis hypogaea HOM05D004611 ORTHO05D005794 4.7e-38 164.5 99 84.8
Actinidia25067 Actinidia chinensis HOM05D004611 ORTHO05D005794 1.8e-37 162.5 89 92.1
Atru.chr6.2576 Acer truncatum HOM05D004611 ORTHO05D005794 9.9e-36 156.8 97 81.4
CANSAT35G0087 Cannabis sativa HOM05D004611 ORTHO05D005794 2.3e-32 145.6 182 50.5
Cpa.g.sc146.71 Carica papaya HOM05D004611 ORTHO05D005794 5.6e-31 141.0 82 89.0
SMO356G0656 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 8.1e-30 137.1 122 60.7
SMO356G0045 Selaginella moellendorffii HOM05D004611 ORTHO05D005794 5.4e-26 124.4 144 47.2
HanXRQChr06g0164931 Helianthus annuus HOM05D004611 ORTHO05D005794 1.1e-23 116.7 85 71.8
HanXRQChr04g0096671 Helianthus annuus HOM05D004611 ORTHO05D005794 1.3e-22 113.2 73 79.5
arahy.Tifrunner.gnm1.ann1.0CQZ6Z Arachis hypogaea HOM05D000862 ORTHO05D000003 8.1e-22 110.5 75 76.0
arahy.Tifrunner.gnm1.ann1.R4H24K Arachis hypogaea HOM05D000862 ORTHO05D000003 2.4e-21 109.0 75 74.7
TPR.G31403 Trifolium pratense HOM05D004611 ORTHO05D005794 3.1e-21 108.6 70 77.1
TPR.G40539 Trifolium pratense HOM05D004611 ORTHO05D005794 1.3e-19 103.2 184 44.0
COL.COLO4_13521 Corchorus olitorius HOM05D004611 ORTHO05D005794 2.2e-19 102.4 91 63.7
Lsat_1_v5_gn_1_111061 Lactuca sativa HOM05D004611 ORTHO05D233625 4.2e-10 71.6 57 68.4


User provided reference genes

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