Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA247G0880 Erigeron canadensis HOM05D006093 ORTHO05D007652 1.8e-206 722.6 434 100.0
ECA238G2964 Erigeron canadensis HOM05D005083 ORTHO05D006310 3.4e-125 452.6 326 71.8
HanXRQChr02g0033451 Helianthus annuus HOM05D006093 ORTHO05D007652 2.8e-119 433.0 296 73.6
Phvul.005G179300 Phaseolus vulgaris HOM05D006093 ORTHO05D007652 9.0e-118 427.9 340 63.8
CSS0022367 Camellia sinensis var. sinensis HOM05D006093 ORTHO05D007652 3.4e-117 426.0 336 68.5
RcHm_v2.0_Chr2g0134861 Rosa chinensis HOM05D006093 ORTHO05D007652 5.8e-117 425.2 338 65.7
CAN.G407.11 Capsicum annuum HOM05D006093 ORTHO05D007652 1.0e-116 424.5 310 68.4
COL.COLO4_11898 Corchorus olitorius HOM05D006093 ORTHO05D007652 6.5e-116 421.8 302 71.2
FAN14G2225 Fragaria x ananassa HOM05D006093 ORTHO05D007652 4.2e-115 419.1 345 63.5
Lalb_Chr24g0395421 Lupinus albus HOM05D006093 ORTHO05D007652 1.6e-114 417.2 338 63.6
FvH4_6g29401 Fragaria vesca HOM05D006093 ORTHO05D007652 3.5e-114 416.0 345 63.2
FAN09G4542 Fragaria x ananassa HOM05D006093 ORTHO05D007652 6.1e-114 415.2 345 63.5
Rhsim12G0190000 Rhododendron simsii HOM05D006093 ORTHO05D007652 7.9e-114 414.8 373 60.3
HanXRQChr02g0033461 Helianthus annuus HOM05D006093 ORTHO05D007652 2.3e-113 413.3 318 67.0
Hma1.2p1_0017F.1_g011320 Hydrangea macrophylla HOM05D006093 ORTHO05D007652 3.9e-113 412.5 303 71.0
Manes.11G058700 Manihot esculenta HOM05D006093 ORTHO05D007652 3.9e-113 412.5 347 62.0
CiPaw.01G249800 Carya illinoinensis HOM05D006093 ORTHO05D007652 8.7e-113 411.4 339 61.4
Ciclev10025737m.g Citrus clementina HOM05D006093 ORTHO05D007652 8.7e-113 411.4 352 62.5
HanXRQChr02g0033471 Helianthus annuus HOM05D006093 ORTHO05D007652 1.1e-112 411.0 346 65.0
Thhalv10011553m.g Eutrema salsugineum HOM05D006093 ORTHO05D007652 1.5e-112 410.6 341 63.3
Sp1g39050 Schrenkiella parvula HOM05D006093 ORTHO05D007652 1.5e-112 410.6 341 63.0
Ca_01048_v3 Cicer arietinum L. HOM05D006093 ORTHO05D007652 1.9e-112 410.2 375 57.6
MD17G1215000 Malus domestica HOM05D006093 ORTHO05D007652 3.3e-112 409.5 312 67.0
Thecc.06G031100 Theobroma cacao HOM05D006093 ORTHO05D007652 9.7e-112 407.9 298 68.5
Duzib235G0399 Durio zibethinus HOM05D006093 ORTHO05D007652 1.6e-111 407.1 340 63.2
Lj3g0003829 Lotus japonicus HOM05D006093 ORTHO05D007652 1.6e-111 407.1 343 62.7
Ah.01g020480 Amaranthus hybridus HOM05D006093 ORTHO05D007652 3.7e-111 406.0 330 63.3
Potri.003G031100 Populus trichocarpa HOM05D006093 ORTHO05D007652 4.8e-111 405.6 348 62.6
TWI12G0620 Tripterygium wilfordii HOM05D006093 ORTHO05D007652 4.8e-111 405.6 329 62.6
EL10Ac9g21886 Beta vulgaris HOM05D006093 ORTHO05D007652 6.3e-111 405.2 297 68.7
Gohir.D10G082500 Gossypium hirsutum HOM05D006093 ORTHO05D007652 6.3e-111 405.2 297 68.7
PSO170G6797 Papaver somniferum HOM05D006093 ORTHO05D007652 1.1e-110 404.4 339 62.5
QL05p032033 Quercus lobata HOM05D006093 ORTHO05D007652 1.4e-110 404.1 343 58.9
vmacro16879 Vaccinium macrocarpon HOM05D006093 ORTHO05D007652 2.4e-110 403.3 350 63.4
AUR62011503 Chenopodium quinoa HOM05D006093 ORTHO05D007652 4.1e-110 402.5 290 70.0
TPR.G37262 Trifolium pratense HOM05D006093 ORTHO05D007652 5.3e-110 402.1 327 63.9
Cc04_g04560 Coffea canephora HOM05D006093 ORTHO05D007652 6.9e-110 401.7 286 70.3
Atru.chr1.2881 Acer truncatum HOM05D006093 ORTHO05D007652 9.0e-110 401.4 345 61.7
Gorai.011G089400 Gossypium raimondii HOM05D006093 ORTHO05D007652 9.0e-110 401.4 352 59.4
AUR62016319 Chenopodium quinoa HOM05D006093 ORTHO05D007652 1.2e-109 401.0 345 61.4
Medtr2g104100 Medicago truncatula HOM05D006093 ORTHO05D007652 1.2e-109 401.0 313 65.5
TAR626G1009 Trochodendron aralioides HOM05D006093 ORTHO05D007652 1.2e-109 401.0 298 68.1
AT1G52500 Arabidopsis thaliana HOM05D006093 ORTHO05D007652 1.5e-109 400.6 290 68.6
BcaC08g43998 Brassica carinata HOM05D006093 ORTHO05D007652 1.5e-109 400.6 300 67.7
BolC6t36581H Brassica oleracea HOM05D006093 ORTHO05D007652 1.5e-109 400.6 300 67.3
A05p18970 Brassica napus HOM05D006093 ORTHO05D007652 2.0e-109 400.2 301 67.8
BraA05t20794Z Brassica rapa HOM05D006093 ORTHO05D007652 2.0e-109 400.2 301 67.8
Carub.0001s4146 Capsella rubella HOM05D006093 ORTHO05D007652 2.0e-109 400.2 300 68.3
arahy.Tifrunner.gnm1.ann1.5T1ZSX Arachis hypogaea HOM05D006093 ORTHO05D007652 4.5e-109 399.1 296 67.2
arahy.Tifrunner.gnm1.ann1.RDN84X Arachis hypogaea HOM05D006093 ORTHO05D007652 4.5e-109 399.1 296 67.2
SalBow2G3638 Salvia bowleyana HOM05D006093 ORTHO05D007652 5.9e-109 398.7 357 58.8
THA.LOC104818014 Tarenaya hassleriana HOM05D006093 ORTHO05D007652 5.9e-109 398.7 345 62.3
Nitab4.5_0010806g0010 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.0e-108 397.9 312 65.4
PGSC0003DMG400014146 Solanum tuberosum HOM05D006093 ORTHO05D007652 1.7e-108 397.1 286 69.9
MSTRG.11153 Avicennia marina HOM05D006093 ORTHO05D007652 3.8e-108 396.0 310 64.2
Glyma.13G366800 Glycine max HOM05D006093 ORTHO05D007652 3.8e-108 396.0 341 61.0
Solyc03g117510.4 Solanum lycopersicum HOM05D006093 ORTHO05D007652 6.5e-108 395.2 300 67.3
Migut.I00747 Erythranthe guttata HOM05D006093 ORTHO05D007652 8.5e-108 394.8 344 60.8
Lsat_1_v5_gn_1_34180 Lactuca sativa HOM05D006093 ORTHO05D007652 8.5e-108 394.8 331 63.7
CANSAT56G0666 Cannabis sativa HOM05D006093 ORTHO05D007652 1.9e-107 393.7 347 61.1
Sopen03g036410 Solanum pennellii HOM05D006093 ORTHO05D007652 2.5e-107 393.3 300 67.3
Os06g0643600 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 4.2e-107 392.5 341 57.5
Lj5A75T43 Lonicera japonica HOM05D006093 ORTHO05D007652 7.2e-107 391.7 367 60.2
VMungo1080G1109 Vigna mungo HOM05D006093 ORTHO05D007652 1.6e-106 390.6 334 61.4
Aa31LG10G2500 Aethionema arabicum HOM05D006093 ORTHO05D007652 2.1e-106 390.2 367 58.3
Eucgr.F03905 Eucalyptus grandis HOM05D006093 ORTHO05D007652 2.7e-106 389.8 280 67.5
Peaxi162Scf00553g00627 Petunia axillaris HOM05D006093 ORTHO05D007652 2.7e-106 389.8 364 57.7
Sabra03G0017500 Salix brachista HOM05D006093 ORTHO05D007652 3.6e-106 389.4 431 51.3
BcaB02g10988 Brassica carinata HOM05D006093 ORTHO05D007652 4.6e-106 389.0 335 61.2
FAN05G1370 Fragaria x ananassa HOM05D006093 ORTHO05D007652 4.6e-106 389.0 339 61.1
Zm00001eb275260 Zea mays HOM05D006093 ORTHO05D007652 6.1e-106 388.7 327 58.7
CDE05G1298 Ceratophyllum demersum HOM05D006093 ORTHO05D007652 7.9e-106 388.3 331 62.5
Nn8g39568 Nelumbo nucifera HOM05D006093 ORTHO05D007652 7.9e-106 388.3 255 72.9
ATR0800G026 Amborella trichopoda HOM05D006093 ORTHO05D007652 1.4e-105 387.5 338 60.4
Cpa.g.sc167.9 Carica papaya HOM05D006093 ORTHO05D007652 5.1e-105 385.6 268 70.1
CsaV3_4G001910 Cucumis sativus L. HOM05D006093 ORTHO05D007652 2.0e-104 383.6 327 61.2
Sed0013008 Sechium edule HOM05D006093 ORTHO05D007652 5.7e-104 382.1 302 63.2
Manes.04G110800 Manihot esculenta HOM05D006093 ORTHO05D007652 9.7e-104 381.3 359 55.7
MBI15_g24195_MAGBIO Magnolia biondii HOM05D006093 ORTHO05D007652 4.1e-102 375.9 332 60.8
DCAR_025523 Daucus carota HOM05D006093 ORTHO05D007652 4.5e-101 372.5 252 72.6
Gohir.A10G068900 Gossypium hirsutum HOM05D006093 ORTHO05D007652 5.9e-101 372.1 353 58.6
GSVIVG01017379001 Vitis vinifera HOM05D006093 ORTHO05D007652 2.2e-100 370.2 249 69.9
PGR102G2220 Punica granatum HOM05D006093 ORTHO05D007652 2.3e-97 360.1 278 64.4
unitig_62.g23594 Utricularia gibba HOM05D006093 ORTHO05D007652 1.1e-96 357.8 378 52.1
Hund00502 Selenicereus undatus HOM05D006093 ORTHO05D007652 2.0e-96 357.1 252 68.3
HPP92_003851 Vanilla planifolia HOM05D006093 ORTHO05D007652 2.6e-96 356.7 348 55.7
Nitab4.5_0003072g0060 Nicotiana tabacum HOM05D006093 ORTHO05D007652 1.7e-95 354.0 320 58.8
ClCG07G012240 Citrullus lanatus HOM05D006093 ORTHO05D007652 2.0e-93 347.1 400 49.5
Os08g0304900 Oryza sativa ssp. japonica HOM05D006093 ORTHO05D007652 4.5e-93 345.9 322 56.2
Prupe.3G090700 Prunus persica HOM05D006093 ORTHO05D007652 5.5e-91 339.0 221 74.2
MELO3C017842.2 Cucumis melo HOM05D006093 ORTHO05D007652 1.0e-89 334.7 352 52.0
AL1G60740 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 5.2e-89 332.4 222 72.1
CARHR042600 Cardamine hirsuta HOM05D006093 ORTHO05D007652 1.5e-88 330.9 222 72.5
Psat5g303120 Pisum sativum HOM05D006093 ORTHO05D007652 2.0e-88 330.5 392 48.5
Haze_16582 Corylus avellana HOM05D006093 ORTHO05D007652 3.1e-86 323.2 290 59.0
SGA_v2.0_scaffold5G02719 Striga asiatica HOM05D006093 ORTHO05D007652 1.0e-84 318.2 233 69.1
Dinv30625 Davidia involucrata HOM05D006093 ORTHO05D007652 3.2e-83 313.2 307 57.0
Mapoly0015s0062 Marchantia polymorpha HOM05D006093 ORTHO05D007652 1.6e-82 310.8 358 45.0
Pp3c23_21520 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.5e-80 304.3 341 45.5
SMO367G0330 Selaginella moellendorffii HOM05D006093 ORTHO05D007652 3.4e-80 303.1 255 58.0
Pp3c8_24280 Physcomitrium patens HOM05D006093 ORTHO05D007652 3.7e-79 299.7 351 45.6
Sc10g0008130 Simmondsia chinensis HOM05D006093 ORTHO05D007652 1.8e-78 297.4 213 68.5
Actinidia08791 Actinidia chinensis HOM05D006093 ORTHO05D007652 7.0e-78 295.4 266 62.0
SHI11225 Sapria himalayana HOM05D006093 ORTHO05D007652 1.5e-75 287.7 330 47.6
Pp3c24_20180 Physcomitrium patens HOM05D006093 ORTHO05D007652 1.4e-70 271.2 352 41.2
Cfa001944 Carpinus fangiana HOM05D006093 ORTHO05D007652 1.0e-68 265.0 248 56.0
CBR_g884 Chara braunii HOM05D006093 ORTHO05D007652 1.8e-62 244.2 253 46.6
Cre10.g428433 Chlamydomonas reinhardtii HOM05D006093 ORTHO05D007652 1.2e-61 241.5 298 44.0
Psat6g066000 Pisum sativum HOM05D006093 ORTHO05D007652 1.5e-56 224.6 219 54.8
MCO15G481 Micromonas commoda HOM05D006093 ORTHO05D007652 1.7e-55 221.1 270 42.2
PSO017G4202 Papaver somniferum HOM05D006093 ORTHO05D007652 8.3e-55 218.8 190 60.5
Cfa026683 Carpinus fangiana HOM05D006093 ORTHO05D007652 4.6e-45 186.4 369 33.3
GSVIVG01026354001 Vitis vinifera HOM05D006093 ORTHO05D007652 8.1e-42 175.6 113 74.3
Eucgr.L03570 Eucalyptus grandis HOM05D006093 ORTHO05D007652 8.9e-41 172.2 114 70.2
Cfa001945 Carpinus fangiana HOM05D006093 ORTHO05D007652 9.2e-38 162.2 347 36.6
Gohir.D10G074901 Gossypium hirsutum HOM05D006093 ORTHO05D007652 1.8e-33 147.9 122 63.1
SEGI_24777 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 1.9e-30 137.9 103 61.2
Actinidia08958 Actinidia chinensis HOM05D006093 ORTHO05D007652 1.5e-27 128.3 83 75.9
Oeu058023.3 Olea europaea HOM05D006093 ORTHO05D005440 1.9e-27 127.9 120 57.5
Dinv01702 Davidia involucrata HOM05D006093 ORTHO05D007652 2.1e-26 124.4 91 69.2
AL7G45760 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 3.6e-26 123.6 97 62.9
Dinv21460 Davidia involucrata HOM05D006093 ORTHO05D007652 4.0e-25 120.2 77 79.2
Medtr3g118550 Medicago truncatula HOM05D006093 ORTHO05D007652 5.8e-16 89.7 123 47.2
CARHR042620 Cardamine hirsuta HOM05D006093 ORTHO05D007652 2.7e-13 80.9 121 47.1
SEGI_39009 Sequoiadendron giganteum HOM05D006093 ORTHO05D007652 5.1e-12 76.6 91 46.2
Thecc.09G173900 Theobroma cacao HOM05D006093 ORTHO05D007652 3.3e-11 73.9 79 49.4
AL1G60750 Arabidopsis lyrata HOM05D006093 ORTHO05D007652 4.3e-11 73.6 84 52.4
Sabra14G0094900 Salix brachista HOM05D006093 ORTHO05D007652 9.0e-09 65.9 54 63.0
SGA_v2.0_scaffold72G24067 Striga asiatica HOM05D006093 ORTHO05D007652 7.6e-08 62.8 110 36.4
Pp3c21_8660 Physcomitrium patens HOM05D016293 ORTHO05D018978 1.1e-06 58.9 101 32.7
PRCOL_00006677 Prasinoderma coloniale HOM05D016293 ORTHO05D018978 7.1e-06 56.2 338 25.4


User provided reference genes

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