Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA246G0765 Erigeron canadensis HOM05D008627 ORTHO05D010841 2.6e-88 328.9 196 100.0
HanXRQChr06g0175551 Helianthus annuus HOM05D008627 ORTHO05D010841 3.6e-58 228.8 189 70.4
Lsat_1_v5_gn_0_9181 Lactuca sativa HOM05D008627 ORTHO05D010841 6.8e-57 224.6 191 68.6
AUR62017639 Chenopodium quinoa HOM05D008627 ORTHO05D010841 4.7e-50 201.8 134 75.4
COL.COLO4_20905 Corchorus olitorius HOM05D008627 ORTHO05D010841 4.7e-50 201.8 134 76.9
EL10Ac9g22891 Beta vulgaris HOM05D008627 ORTHO05D010841 6.2e-50 201.4 134 76.1
RcHm_v2.0_Chr4g0446331 Rosa chinensis HOM05D008627 ORTHO05D010841 8.1e-50 201.1 134 73.9
TWI74G0088 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 8.1e-50 201.1 133 75.9
FAN17G1667 Fragaria x ananassa HOM05D008627 ORTHO05D010841 1.4e-49 200.3 134 76.1
FAN07G2611 Fragaria x ananassa HOM05D008627 ORTHO05D010841 2.4e-49 199.5 134 75.4
AUR62007022 Chenopodium quinoa HOM05D008627 ORTHO05D010841 4.0e-49 198.7 134 73.9
Ciclev10032846m.g Citrus clementina HOM05D008627 ORTHO05D010841 4.0e-49 198.7 136 70.6
FAN12G2769 Fragaria x ananassa HOM05D008627 ORTHO05D010841 4.0e-49 198.7 134 75.4
FvH4_4g36570 Fragaria vesca HOM05D008627 ORTHO05D010841 5.3e-49 198.4 134 75.4
TWI77G0869 Tripterygium wilfordii HOM05D008627 ORTHO05D010841 1.5e-48 196.8 133 73.7
Potri.010G096600 Populus trichocarpa HOM05D008627 ORTHO05D010841 7.6e-48 194.5 121 77.7
Duzib151G0774 Durio zibethinus HOM05D008627 ORTHO05D010841 1.3e-47 193.7 134 72.4
Gohir.D10G133100 Gossypium hirsutum HOM05D008627 ORTHO05D010841 1.7e-47 193.4 134 73.9
Gohir.A10G133600 Gossypium hirsutum HOM05D008627 ORTHO05D010841 3.8e-47 192.2 121 77.7
Sabra10G0069200 Salix brachista HOM05D008627 ORTHO05D010841 4.9e-47 191.8 128 74.2
Gorai.011G146800 Gossypium raimondii HOM05D008627 ORTHO05D010841 1.1e-46 190.7 135 74.1
Potri.008G145500 Populus trichocarpa HOM05D008627 ORTHO05D010841 1.4e-46 190.3 121 75.2
MBI03_g05119_MAGBIO Magnolia biondii HOM05D008627 ORTHO05D010841 2.1e-45 186.4 136 71.3
Cpa.g.sc953.2 Carica papaya HOM05D008627 ORTHO05D010841 6.0e-45 184.9 121 70.2
MD16G1006400 Malus domestica HOM05D008627 ORTHO05D010841 3.0e-44 182.6 131 71.8
Prupe.1G344200 Prunus persica HOM05D008627 ORTHO05D010841 3.9e-44 182.2 134 69.4
FAN22G1733 Fragaria x ananassa HOM05D008627 ORTHO05D010841 4.3e-43 178.7 167 59.3
CDE05G3193 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 9.0e-41 171.0 125 67.2
ATR0618G186 Amborella trichopoda HOM05D008627 ORTHO05D010841 9.3e-38 161.0 132 61.4
HPP92_002493 Vanilla planifolia HOM05D008627 ORTHO05D010841 2.7e-37 159.5 130 60.0
Thecc.04G186000 Theobroma cacao HOM05D008627 ORTHO05D010841 5.1e-36 155.2 107 72.9
AUR62012873 Chenopodium quinoa HOM05D008627 ORTHO05D010841 6.7e-36 154.8 107 73.8
PSO017G6499 Papaver somniferum HOM05D008627 ORTHO05D010841 6.7e-36 154.8 124 60.5
PSO478G2256 Papaver somniferum HOM05D008627 ORTHO05D010841 3.3e-35 152.5 125 60.8
CBR_g23395 Chara braunii HOM05D008627 ORTHO05D010841 1.3e-31 140.6 119 57.1
Pp3c5_20280 Physcomitrium patens HOM05D008627 ORTHO05D010841 7.1e-30 134.8 139 52.5
CDE05G0278 Ceratophyllum demersum HOM05D008627 ORTHO05D010841 4.9e-23 112.1 73 72.6
Dinv20704 Davidia involucrata HOM05D008627 ORTHO05D010841 1.1e-19 100.9 70 70.0
Prupe.7G051000 Prunus persica HOM05D008627 ORTHO05D010841 2.5e-19 99.8 71 69.0
Duzib151G0313 Durio zibethinus HOM05D008627 ORTHO05D010841 4.3e-19 99.0 70 71.4
Prupe.1G083400 Prunus persica HOM05D008627 ORTHO05D010841 4.3e-19 99.0 70 70.0
Prupe.1G114900 Prunus persica HOM05D008627 ORTHO05D010841 4.3e-19 99.0 70 70.0
Prupe.3G229600 Prunus persica HOM05D008627 ORTHO05D010841 1.3e-18 97.4 70 68.6
Hund24318 Selenicereus undatus HOM05D008627 ORTHO05D010841 9.0e-17 91.3 62 74.2
Cre12.g559150 Chlamydomonas reinhardtii HOM05D008627 ORTHO05D010841 3.8e-15 85.9 148 33.8
Cpa.g.sc1.209 Carica papaya HOM05D003846 ORTHO05D004726 5.9e-08 62.0 129 30.2
Nn3g17770 Nelumbo nucifera HOM05D003846 ORTHO05D004726 5.9e-08 62.0 131 30.5
Potri.010G128500 Populus trichocarpa HOM05D003846 ORTHO05D004726 7.7e-08 61.6 131 29.0
Zm00001eb041630 Zea mays HOM05D003846 ORTHO05D004726 1.0e-07 61.2 123 33.3
Duzib204G0001 Durio zibethinus HOM05D003846 ORTHO05D004726 1.3e-07 60.8 142 29.6
Duzib248G0399 Durio zibethinus HOM05D003846 ORTHO05D004726 1.3e-07 60.8 142 29.6
QL10p023733 Quercus lobata HOM05D003846 ORTHO05D004726 1.3e-07 60.8 128 29.7
CsaV3_1G006510 Cucumis sativus L. HOM05D003846 ORTHO05D004726 1.7e-07 60.5 129 30.2
Dinv40424 Davidia involucrata HOM05D003846 ORTHO05D004726 1.7e-07 60.5 125 31.2
Migut.D01214 Erythranthe guttata HOM05D003846 ORTHO05D004726 1.7e-07 60.5 118 29.7
unitig_21.g20429 Utricularia gibba HOM05D003846 ORTHO05D004726 1.7e-07 60.5 122 29.5
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 2.2e-07 60.1 130 30.8
arahy.Tifrunner.gnm1.ann1.5K2M2S Arachis hypogaea HOM05D003846 ORTHO05D004726 2.2e-07 60.1 142 30.3
arahy.Tifrunner.gnm1.ann1.5U1FHR Arachis hypogaea HOM05D003846 ORTHO05D004726 2.2e-07 60.1 142 30.3
Dinv07363 Davidia involucrata HOM05D003846 ORTHO05D004726 2.2e-07 60.1 129 30.2
Thecc.02G359500 Theobroma cacao HOM05D003846 ORTHO05D004726 2.2e-07 60.1 129 30.2
arahy.Tifrunner.gnm1.ann1.72UZVS Arachis hypogaea HOM05D003846 ORTHO05D004726 2.9e-07 59.7 124 30.6
Dinv21120 Davidia involucrata HOM05D003846 ORTHO05D004726 2.9e-07 59.7 124 29.8
Mapoly0068s0048 Marchantia polymorpha HOM05D003846 ORTHO05D004726 2.9e-07 59.7 117 29.9
Sabra10G0097700 Salix brachista HOM05D003846 ORTHO05D004726 2.9e-07 59.7 131 27.5
Sp5g23760 Schrenkiella parvula HOM05D003846 ORTHO05D004726 2.9e-07 59.7 130 30.8
SMO356G0199 Selaginella moellendorffii HOM05D003846 ORTHO05D004726 2.9e-07 59.7 118 31.4
TAR374G1390 Trochodendron aralioides HOM05D003846 ORTHO05D004726 2.9e-07 59.7 124 30.6
C02p25100 Brassica napus HOM05D003846 ORTHO05D004726 3.8e-07 59.3 123 30.1
BraA07t30817Z Brassica rapa HOM05D003846 ORTHO05D004726 3.8e-07 59.3 130 30.0
ClCG04G011240 Citrullus lanatus HOM05D003846 ORTHO05D004726 3.8e-07 59.3 129 29.5
Cc04_g07410 Coffea canephora HOM05D003846 ORTHO05D004726 3.8e-07 59.3 130 28.5
DCAR_023191 Daucus carota HOM05D003846 ORTHO05D004726 3.8e-07 59.3 136 27.2
Lj9A429T51 Lonicera japonica HOM05D003846 ORTHO05D004726 3.8e-07 59.3 119 30.3
Lalb_Chr14g0371301 Lupinus albus HOM05D003846 ORTHO05D004726 3.8e-07 59.3 116 31.9
MBI19_g21095_MAGBIO Magnolia biondii HOM05D003846 ORTHO05D004726 3.8e-07 59.3 118 30.5
Solyc03g119700.3 Solanum lycopersicum HOM05D003846 ORTHO05D004726 3.8e-07 59.3 129 28.7
Sopen03g038530 Solanum pennellii HOM05D003846 ORTHO05D004726 3.8e-07 59.3 129 28.7
PGSC0003DMG400005627 Solanum tuberosum HOM05D003846 ORTHO05D004726 3.8e-07 59.3 129 28.7
BcaB03g15438 Brassica carinata HOM05D003846 ORTHO05D004726 5.0e-07 58.9 130 30.0
MELO3C002078.2 Cucumis melo HOM05D003846 ORTHO05D004726 5.0e-07 58.9 129 29.5
Thhalv10019264m.g Eutrema salsugineum HOM05D003846 ORTHO05D004726 5.0e-07 58.9 130 30.0
Oeu024319.1 Olea europaea HOM05D003846 ORTHO05D004726 5.0e-07 58.9 119 29.4
PGR044G0282 Punica granatum HOM05D003846 ORTHO05D004726 5.0e-07 58.9 130 30.0
GSVIVG01008253001 Vitis vinifera HOM05D003846 ORTHO05D004726 5.0e-07 58.9 124 29.8
Ah.02g127070 Amaranthus hybridus HOM05D003846 ORTHO05D004726 6.5e-07 58.5 116 30.2
BcaB03g15443 Brassica carinata HOM05D003846 ORTHO05D004726 6.5e-07 58.5 130 30.0
CiPaw.16G084800 Carya illinoinensis HOM05D003846 ORTHO05D004726 6.5e-07 58.5 124 29.8
Eucgr.K02665 Eucalyptus grandis HOM05D003846 ORTHO05D004726 6.5e-07 58.5 136 27.2
Glyma.07G089500 Glycine max HOM05D003846 ORTHO05D004726 6.5e-07 58.5 122 31.1
Glyma.09G187300 Glycine max HOM05D003846 ORTHO05D004726 6.5e-07 58.5 122 31.1
Lsat_1_v5_gn_3_40660 Lactuca sativa HOM05D003846 ORTHO05D004726 6.5e-07 58.5 121 30.6
Lj2g0005403 Lotus japonicus HOM05D003846 ORTHO05D004726 6.5e-07 58.5 122 29.5
SalBow1G4777 Salvia bowleyana HOM05D003846 ORTHO05D004726 6.5e-07 58.5 126 29.4
AT1G68660 Arabidopsis thaliana HOM05D003846 ORTHO05D004726 8.5e-07 58.2 130 30.0
CARHR061470 Cardamine hirsuta HOM05D003846 ORTHO05D004726 8.5e-07 58.2 130 30.0
Cfa019801 Carpinus fangiana HOM05D003846 ORTHO05D004726 8.5e-07 58.2 124 29.8
Haze_18631 Corylus avellana HOM05D003846 ORTHO05D004726 8.5e-07 58.2 124 29.8
MELO3C012223.2 Cucumis melo HOM05D003846 ORTHO05D004726 8.5e-07 58.2 130 31.5
Glyma.02G098100 Glycine max HOM05D003846 ORTHO05D004726 8.5e-07 58.2 124 30.6
HanXRQChr06g0171111 Helianthus annuus HOM05D003846 ORTHO05D004726 8.5e-07 58.2 127 31.5
Lalb_Chr17g0341961 Lupinus albus HOM05D003846 ORTHO05D004726 8.5e-07 58.2 124 29.0
Phvul.003G028500 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 8.5e-07 58.2 122 28.7
TWI31G0653 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 8.5e-07 58.2 124 29.8
Zm00001eb179570 Zea mays HOM05D003846 ORTHO05D004726 8.5e-07 58.2 123 31.7
ATR0665G367 Amborella trichopoda HOM05D003846 ORTHO05D004726 1.1e-06 57.8 116 30.2
AL2G27580 Arabidopsis lyrata HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 29.3
BcaB05g24403 Brassica carinata HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 29.3
BcaC03g14976 Brassica carinata HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 29.3
A02p15260 Brassica napus HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 29.3
A07p31880 Brassica napus HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 29.3
C06p37450 Brassica napus HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 29.3
BolC2t08590H Brassica oleracea HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 29.3
BolC6t38848H Brassica oleracea HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 29.3
BraA02t06588Z Brassica rapa HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 29.3
Carub.0002s1520 Capsella rubella HOM05D003846 ORTHO05D004726 1.1e-06 57.8 130 29.2
Duzib251G0345 Durio zibethinus HOM05D003846 ORTHO05D004726 1.1e-06 57.8 124 29.0
ECA246G4193 Erigeron canadensis HOM05D003846 ORTHO05D004726 1.1e-06 57.8 120 30.8
Manes.14G098800 Manihot esculenta HOM05D003846 ORTHO05D004726 1.1e-06 57.8 129 28.7
Os08g0432500 Oryza sativa ssp. japonica HOM05D003846 ORTHO05D004726 1.1e-06 57.8 123 31.7
Rhsim12G0144000 Rhododendron simsii HOM05D003846 ORTHO05D004726 1.1e-06 57.8 127 29.1
THA.LOC104821956 Tarenaya hassleriana HOM05D003846 ORTHO05D004726 1.1e-06 57.8 131 29.0
TPR.G9001 Trifolium pratense HOM05D003846 ORTHO05D004726 1.1e-06 57.8 128 28.1
TWI79G0122 Tripterygium wilfordii HOM05D003846 ORTHO05D004726 1.1e-06 57.8 131 30.5
MSTRG.9269 Avicennia marina HOM05D003846 ORTHO05D004726 1.4e-06 57.4 116 29.3
ClCG05G022950 Citrullus lanatus HOM05D003846 ORTHO05D004726 1.4e-06 57.4 132 31.1
Ciclev10032968m.g Citrus clementina HOM05D003846 ORTHO05D004726 1.4e-06 57.4 122 31.1
Lj2g0006290 Lotus japonicus HOM05D003846 ORTHO05D004726 1.4e-06 57.4 116 29.3
Manes.06G071100 Manihot esculenta HOM05D003846 ORTHO05D004726 1.4e-06 57.4 124 29.0
Medtr5g054770 Medicago truncatula HOM05D003846 ORTHO05D004726 1.4e-06 57.4 122 27.9
Prupe.1G306800 Prunus persica HOM05D003846 ORTHO05D004726 1.4e-06 57.4 118 28.8
TPR.G38292 Trifolium pratense HOM05D003846 ORTHO05D004726 1.4e-06 57.4 122 27.9
unitig_744.g24407 Utricularia gibba HOM05D003846 ORTHO05D004726 1.4e-06 57.4 125 27.2
vmacro16453 Vaccinium macrocarpon HOM05D003846 ORTHO05D004726 1.4e-06 57.4 130 30.0
Actinidia31024 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.9e-06 57.0 134 25.4
Actinidia35079 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.9e-06 57.0 130 29.2
Actinidia39818 Actinidia chinensis HOM05D003846 ORTHO05D004726 1.9e-06 57.0 128 26.6
Ah.03g137840 Amaranthus hybridus HOM05D003846 ORTHO05D004726 1.9e-06 57.0 131 27.5
CSS0029565 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 1.9e-06 57.0 133 27.8
CiPaw.15G127700 Carya illinoinensis HOM05D003846 ORTHO05D004726 1.9e-06 57.0 124 29.8
Glyma.01G084700 Glycine max HOM05D003846 ORTHO05D004726 1.9e-06 57.0 122 30.3
Gohir.A13G053526 Gossypium hirsutum HOM05D003846 ORTHO05D004726 1.9e-06 57.0 120 29.2
Lalb_Chr10g0099871 Lupinus albus HOM05D003846 ORTHO05D004726 1.9e-06 57.0 121 30.6
Nitab4.5_0001599g0080 Nicotiana tabacum HOM05D003846 ORTHO05D004726 1.9e-06 57.0 124 29.0
Peaxi162Scf00015g00824 Petunia axillaris HOM05D003846 ORTHO05D004726 1.9e-06 57.0 124 29.0
Sc04g0006620 Simmondsia chinensis HOM05D003846 ORTHO05D004726 1.9e-06 57.0 119 29.4
VMungo1215G1161 Vigna mungo HOM05D003846 ORTHO05D004726 1.9e-06 57.0 122 28.7
CAN.G438.125 Capsicum annuum HOM05D003846 ORTHO05D004726 2.5e-06 56.6 118 28.0
Aqoxy3G00349 Aquilegia oxysepala HOM05D003846 ORTHO05D004726 3.2e-06 56.2 118 28.8
CSS0028088 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 3.2e-06 56.2 129 27.9
COL.COLO4_07882 Corchorus olitorius HOM05D000199 ORTHO05D000550 3.2e-06 56.2 124 28.2
Gorai.013G080600 Gossypium raimondii HOM05D003846 ORTHO05D004726 3.2e-06 56.2 114 28.9
MD13G1045100 Malus domestica HOM05D003846 ORTHO05D004726 3.2e-06 56.2 116 29.3
CSS0009272 Camellia sinensis var. sinensis HOM05D003846 ORTHO05D004726 4.2e-06 55.8 123 26.8
Cre17.g696400 Chlamydomonas reinhardtii HOM05D003846 ORTHO05D004726 4.2e-06 55.8 73 41.1
Gohir.A13G053470 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.2e-06 55.8 120 29.2
Gohir.D13G070700 Gossypium hirsutum HOM05D003846 ORTHO05D004726 4.2e-06 55.8 120 29.2
Gorai.013G080900 Gossypium raimondii HOM05D003846 ORTHO05D004726 4.2e-06 55.8 120 29.2
Nitab4.5_0010565g0020 Nicotiana tabacum HOM05D003846 ORTHO05D004726 4.2e-06 55.8 124 29.0
Potri.008G117800 Populus trichocarpa HOM05D003846 ORTHO05D004726 4.2e-06 55.8 124 28.2
Sed0019100 Sechium edule HOM05D003846 ORTHO05D004726 4.2e-06 55.8 121 30.6
Hund25092 Selenicereus undatus HOM05D003846 ORTHO05D004726 4.2e-06 55.8 139 27.3
VMungo0464G1055 Vigna mungo HOM05D003846 ORTHO05D004726 4.2e-06 55.8 122 28.7
MD16G1046400 Malus domestica HOM05D003846 ORTHO05D004726 5.5e-06 55.5 116 30.2
Phvul.004G160300 Phaseolus vulgaris HOM05D003846 ORTHO05D004726 5.5e-06 55.5 122 28.7
AagrBONN_evm.TU.Sc2ySwM_369.545 Anthoceros agrestis HOM05D003846 ORTHO05D004726 7.2e-06 55.1 124 28.2
AUR62002909 Chenopodium quinoa HOM05D003846 ORTHO05D004726 7.2e-06 55.1 123 28.5
AUR62035268 Chenopodium quinoa HOM05D003846 ORTHO05D004726 7.2e-06 55.1 123 28.5
Gohir.D13G070400 Gossypium hirsutum HOM05D003846 ORTHO05D004726 9.4e-06 54.7 120 27.5
Lj6A764T53 Lonicera japonica HOM05D003846 ORTHO05D004726 9.4e-06 54.7 118 28.8


User provided reference genes

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