Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 9.9e-231 803.5 545 100.0
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 6.7e-195 684.5 504 79.8
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.3e-190 670.2 478 83.9
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 1.4e-179 633.6 508 72.4
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 5.9e-175 618.2 535 69.7
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 2.1e-172 609.8 508 70.1
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 1.4e-171 607.1 507 73.4
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.2e-167 594.0 496 75.2
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 1.6e-167 593.6 492 72.6
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 1.6e-167 593.6 499 71.7
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 2.3e-166 589.7 499 73.9
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 3.8e-166 589.0 503 70.4
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 7.2e-165 584.7 480 70.2
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 7.2e-165 584.7 485 72.0
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 2.1e-164 583.2 449 72.2
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 3.6e-164 582.4 479 71.8
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 6.1e-164 581.6 481 70.7
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 6.1e-164 581.6 449 71.9
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 1.4e-163 580.5 482 72.2
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 2.3e-163 579.7 481 74.6
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 8.9e-163 577.8 449 73.1
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 8.9e-163 577.8 514 68.3
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 2.0e-162 576.6 506 68.8
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 2.0e-162 576.6 482 71.6
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 7.5e-162 574.7 547 72.2
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 9.8e-162 574.3 449 72.4
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 9.8e-162 574.3 483 71.8
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 1.3e-161 573.9 484 70.9
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 2.8e-161 572.8 510 69.4
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 4.9e-161 572.0 517 66.7
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 8.3e-161 571.2 483 69.6
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 1.1e-160 570.9 506 71.5
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 1.8e-160 570.1 492 68.7
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 4.1e-160 568.9 483 73.5
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 7.0e-160 568.2 483 70.6
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 1.2e-159 567.4 509 68.4
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 1.6e-159 567.0 449 74.6
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 2.0e-159 566.6 504 71.0
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 7.8e-159 564.7 497 70.0
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 1.0e-158 564.3 517 70.4
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 5.0e-158 562.0 477 74.0
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 6.6e-158 561.6 482 71.8
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 6.6e-158 561.6 514 70.4
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 4.3e-157 558.9 519 71.1
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 2.1e-156 556.6 502 70.3
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 2.8e-156 556.2 445 71.5
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 3.6e-156 555.8 483 70.2
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.4e-155 553.9 513 68.4
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 3.0e-155 552.7 512 71.1
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.0e-155 552.7 495 68.7
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 3.0e-155 552.7 487 67.4
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 2.6e-154 549.7 498 72.1
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 4.4e-154 548.9 499 72.3
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 7.5e-154 548.1 447 73.6
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 9.8e-154 547.7 481 70.5
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 1.3e-153 547.4 482 67.2
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 1.3e-153 547.4 482 67.2
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 1.3e-153 547.4 481 69.6
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 3.7e-153 545.8 445 72.4
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 1.9e-152 543.5 515 68.2
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 2.4e-152 543.1 482 65.8
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 3.2e-152 542.7 448 73.0
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 4.1e-152 542.3 509 63.7
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 4.6e-151 538.9 499 66.7
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 6.0e-151 538.5 481 69.9
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 2.3e-150 536.6 482 70.3
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 2.3e-150 536.6 482 73.4
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 2.3e-150 536.6 571 61.8
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 6.6e-150 535.0 513 65.9
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 8.6e-150 534.6 481 66.5
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 4.3e-149 532.3 493 64.1
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 6.2e-148 528.5 499 66.7
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 2.2e-145 520.0 447 68.5
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 8.3e-145 518.1 499 67.1
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 6.0e-143 511.9 448 71.0
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.5e-141 507.3 516 60.9
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 7.3e-141 505.0 524 62.0
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 1.4e-139 500.7 449 66.4
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 3.2e-136 489.6 447 65.1
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 1.1e-133 481.1 374 75.4
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.1e-132 476.9 372 75.0
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 6.2e-132 475.3 373 73.2
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 8.9e-131 471.5 527 59.2
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 4.9e-129 465.7 481 57.2
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 2.4e-128 463.4 375 73.1
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 2.4e-128 463.4 482 60.0
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 6.6e-126 455.3 386 71.5
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 3.0e-118 429.9 473 57.3
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.8e-116 423.3 389 68.6
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 2.3e-110 403.7 383 68.9
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 3.7e-108 396.4 534 54.9
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 9.9e-106 388.3 502 49.2
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 1.9e-104 384.0 386 61.9
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 6.0e-103 379.0 473 54.1
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 3.1e-99 366.7 451 56.5
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 1.5e-93 347.8 365 66.6
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 4.3e-93 346.3 363 65.8
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 3.1e-91 340.1 320 66.9
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 2.7e-87 327.0 306 67.3
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 1.3e-84 318.2 296 63.9
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 1.3e-84 318.2 476 49.4
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 3.7e-84 316.6 340 62.6
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 3.1e-83 313.5 308 67.5
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 5.5e-80 302.8 397 58.2
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 7.9e-79 298.9 461 47.3
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 3.3e-69 266.9 324 56.8
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 5.9e-66 256.1 241 66.0
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 6.1e-63 246.1 333 60.1
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 8.8e-62 242.3 154 77.3
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 2.2e-60 237.7 246 56.9
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 3.7e-60 236.9 314 58.6
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.2e-58 231.9 128 90.6
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 2.7e-58 230.7 128 89.1
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 1.5e-56 224.9 234 62.0
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 7.2e-56 222.6 234 62.0
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 1.2e-55 221.9 271 53.9
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 1.8e-51 208.0 128 84.4
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 7.2e-48 196.1 350 45.7
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 1.6e-47 194.9 453 47.5
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.8e-38 164.9 84 92.9
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 1.8e-38 164.9 470 35.5
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 3.5e-26 124.0 160 49.4
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 9.5e-24 115.9 66 87.9
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 6.2e-23 113.2 72 79.2
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.0e-21 108.2 66 83.3
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.6e-21 107.8 113 55.8
CSS0031445 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 2.6e-21 107.8 111 60.4
MD02G1172100 Malus domestica HOM05D005490 ORTHO05D006606 4.4e-21 107.1 128 60.9
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 1.1e-19 102.4 143 46.9
Actinidia36494 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.2e-18 99.0 76 71.1
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.6e-18 98.6 64 82.8
ECA233G0248 Erigeron canadensis HOM05D000047 ORTHO05D006606 1.1e-14 85.9 142 60.6
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.5e-13 82.0 376 28.7
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 1.3e-12 79.0 86 54.7
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 2.2e-12 78.2 191 31.9
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 4.9e-12 77.0 85 50.6
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 1.4e-11 75.5 50 76.0
TAR381G1012 Trochodendron aralioides HOM05D005490 ORTHO05D006606 2.4e-11 74.7 93 62.4
Actinidia12052 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.0e-06 57.4 69 50.7


User provided reference genes

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