Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 6.0e-288 993.4 485 100.0
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 1.2e-256 889.4 474 90.3
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.3e-221 773.1 477 79.7
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 2.0e-219 765.8 479 78.5
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 2.3e-215 752.3 474 77.6
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.2e-214 750.0 481 77.8
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 7.5e-214 747.3 482 75.5
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 2.2e-213 745.7 476 75.4
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 2.9e-213 745.3 469 77.0
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 3.7e-213 745.0 480 75.2
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.4e-212 741.1 469 76.5
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 9.2e-212 740.3 469 77.2
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 2.0e-211 739.2 481 75.1
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 2.0e-211 739.2 482 74.1
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 2.7e-211 738.8 481 74.6
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.9e-211 737.6 468 75.6
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 7.8e-211 737.3 466 76.2
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.0e-210 736.9 474 74.3
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.0e-210 736.9 469 75.5
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 1.3e-210 736.5 476 75.2
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 3.9e-210 734.9 474 76.6
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.9e-210 734.9 469 75.5
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.0e-210 734.6 467 75.4
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 1.9e-209 732.6 476 75.4
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 2.5e-209 732.3 476 75.0
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 3.3e-209 731.9 486 74.5
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 5.6e-209 731.1 474 76.2
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 5.6e-209 731.1 477 75.5
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 5.6e-209 731.1 481 74.0
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 9.5e-209 730.3 473 75.5
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.2e-208 729.9 469 75.5
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 1.6e-208 729.6 478 74.3
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 2.8e-208 728.8 477 75.3
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 2.8e-208 728.8 469 75.7
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 3.6e-208 728.4 473 75.5
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 3.6e-208 728.4 485 74.2
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 6.2e-208 727.6 481 73.4
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 1.0e-207 726.9 469 75.9
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.0e-206 722.6 464 75.9
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 2.6e-206 722.2 466 73.2
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 2.6e-206 722.2 482 72.6
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 4.4e-206 721.5 469 74.2
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 9.8e-206 720.3 463 76.0
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 3.2e-204 715.3 470 74.7
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 3.2e-204 715.3 446 76.5
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 7.0e-204 714.1 465 76.1
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 9.2e-204 713.8 474 73.4
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 1.2e-203 713.4 474 72.8
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.6e-203 713.0 475 72.4
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 1.6e-203 713.0 480 73.3
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 2.7e-203 712.2 467 77.7
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 7.8e-203 710.7 474 72.6
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 1.3e-202 709.9 479 73.9
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 2.3e-202 709.1 453 75.5
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 3.0e-202 708.8 469 73.8
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 6.6e-202 707.6 476 71.8
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 6.6e-202 707.6 551 64.8
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 8.6e-202 707.2 466 73.6
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.5e-201 706.4 468 72.9
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 1.9e-201 706.1 468 74.6
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 2.1e-200 702.6 457 74.8
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 4.7e-200 701.4 468 72.0
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.1e-199 700.3 469 74.4
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 6.4e-197 691.0 464 72.4
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 9.2e-196 687.2 474 71.5
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 2.1e-195 686.0 434 77.2
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 3.5e-195 685.3 480 71.7
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 7.8e-195 684.1 483 71.6
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 1.0e-194 683.7 481 70.9
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 5.1e-194 681.4 481 71.5
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 4.7e-192 674.9 470 69.1
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 6.2e-192 674.5 469 72.1
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 8.1e-192 674.1 470 72.1
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 2.3e-191 672.5 475 69.7
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 2.0e-190 669.5 428 76.2
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 3.2e-188 662.1 469 69.9
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 7.1e-188 661.0 474 69.8
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.2e-187 660.2 473 70.8
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 6.0e-187 657.9 469 70.1
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 2.3e-186 656.0 469 69.3
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 3.0e-186 655.6 469 69.9
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 3.0e-186 655.6 474 68.8
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 8.6e-186 654.1 469 69.3
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 8.6e-186 654.1 469 69.3
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 8.6e-186 654.1 470 69.8
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 2.5e-185 652.5 469 69.5
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 9.6e-185 650.6 469 69.3
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 2.8e-184 649.0 466 69.3
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 2.8e-184 649.0 469 69.1
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 6.2e-184 647.9 469 69.1
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 2.4e-183 646.0 469 69.1
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 1.2e-182 643.7 469 68.7
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 1.2e-182 643.7 469 68.7
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.2e-182 643.7 469 67.8
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 5.8e-182 641.3 468 68.8
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 1.7e-181 639.8 495 64.4
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 2.9e-181 639.0 424 73.1
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 1.1e-180 637.1 468 67.5
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 1.4e-180 636.7 487 67.8
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.3e-178 629.4 412 72.8
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 8.7e-178 627.5 526 62.7
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.5e-177 625.9 513 60.6
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.1e-175 620.5 469 67.6
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 2.6e-174 615.9 443 68.6
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 1.3e-173 613.6 471 65.0
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 2.1e-171 606.3 414 70.5
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.0e-162 577.4 466 65.7
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.8e-162 576.6 366 74.9
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.1e-160 569.7 480 60.0
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 3.4e-158 562.4 405 68.4
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 9.3e-156 554.3 350 75.4
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 4.3e-153 545.4 513 55.8
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 7.4e-153 544.7 466 61.2
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 1.3e-149 533.9 495 57.6
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.6e-147 525.8 363 70.5
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.1e-145 520.8 477 58.9
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 3.4e-142 509.2 471 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 2.0e-134 483.4 478 52.5
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 6.7e-130 468.4 547 47.3
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.1e-124 451.1 469 52.9
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 4.5e-110 402.5 329 65.3
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 1.7e-109 400.6 267 71.2
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 4.7e-107 392.5 238 79.8
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 1.3e-104 384.4 305 62.6
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 6.6e-93 345.5 481 42.6
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 5.2e-90 335.9 287 64.8
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 4.0e-82 309.7 202 70.3
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.7e-80 303.1 274 59.1
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 1.4e-79 301.2 382 42.9
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 2.4e-79 300.4 489 37.4
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 7.1e-71 272.3 248 60.5
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 9.6e-68 261.9 505 34.9
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 2.9e-64 250.4 472 37.1
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 3.8e-64 250.0 272 48.2
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 3.9e-61 240.0 453 37.3
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.3e-53 214.9 181 59.1
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 3.9e-53 213.4 174 61.5
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 1.6e-51 208.0 332 41.0
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.1e-50 203.8 111 84.7
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.9e-50 202.6 111 84.7
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 3.4e-49 200.3 111 82.9
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 1.4e-47 194.9 209 49.8
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 3.2e-47 193.7 198 50.5
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 4.8e-43 179.9 202 51.0
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 4.5e-41 173.3 107 77.6
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.5e-40 169.5 111 73.0
TPR.G22508 Trifolium pratense HOM05D004406 ORTHO05D005660 2.1e-38 164.5 118 71.2
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 4.6e-38 163.3 125 63.2
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.3e-36 157.1 314 34.4
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 3.2e-31 140.6 122 55.7
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 2.3e-29 134.4 92 66.3
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 3.9e-29 133.7 104 60.6
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.8e-27 127.5 67 91.0
Lj3g0015683 Lotus japonicus HOM05D004406 ORTHO05D036510 1.6e-22 111.7 75 73.3
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 1.4e-21 108.6 125 52.0
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.5e-17 95.1 58 72.4
C02p50710 Brassica napus HOM05D004406 ORTHO05D005660 2.7e-14 84.3 59 69.5
SEGI_01378 Sequoiadendron giganteum HOM05D000678 ORTHO05D001709 1.0e-08 65.9 42 76.2
Gohir.D11G203250 Gossypium hirsutum HOM05D004406 ORTHO05D012367 3.2e-07 60.8 46 60.9
DCAR_010031 Daucus carota HOM05D000781 ORTHO05D012367 5.5e-07 60.1 90 40.0


User provided reference genes

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