Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA236G2279 Erigeron canadensis HOM05D003513 ORTHO05D004660 7.1e-112 407.5 243 100.0
Lsat_1_v5_gn_7_84220 Lactuca sativa HOM05D003513 ORTHO05D004660 3.0e-70 269.2 222 68.0
HanXRQChr17g0550541 Helianthus annuus HOM05D003513 ORTHO05D004660 1.2e-63 247.3 192 76.6
vmacro01922 Vaccinium macrocarpon HOM05D003513 ORTHO05D004660 1.0e-57 227.6 238 59.2
Lj9A339T51 Lonicera japonica HOM05D003513 ORTHO05D004660 6.1e-55 218.4 213 60.1
CSS0016653 Camellia sinensis var. sinensis HOM05D003513 ORTHO05D004660 1.0e-54 217.6 232 57.3
Dinv17746 Davidia involucrata HOM05D003513 ORTHO05D004660 3.3e-53 212.6 201 62.7
Hma1.2p1_0661F.1_g197860 Hydrangea macrophylla HOM05D003513 ORTHO05D004660 5.7e-53 211.8 213 59.6
GSVIVG01036987001 Vitis vinifera HOM05D003513 ORTHO05D004660 2.8e-52 209.5 235 56.2
Actinidia00338 Actinidia chinensis HOM05D003513 ORTHO05D004660 3.7e-52 209.1 234 56.4
MELO3C013317.2 Cucumis melo HOM05D003513 ORTHO05D004660 4.1e-51 205.7 206 61.2
TAR375G0591 Trochodendron aralioides HOM05D003513 ORTHO05D004660 4.1e-51 205.7 237 54.9
Rhsim11G0147300 Rhododendron simsii HOM05D003513 ORTHO05D004660 5.3e-51 205.3 256 52.7
Actinidia02426 Actinidia chinensis HOM05D003513 ORTHO05D004660 1.2e-50 204.1 214 58.9
TWI14G0477 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.7e-49 200.3 218 56.4
COL.COLO4_17824 Corchorus olitorius HOM05D003513 ORTHO05D004660 2.2e-49 199.9 213 60.1
ClCG02G003790 Citrullus lanatus HOM05D003513 ORTHO05D004660 6.5e-49 198.4 205 58.5
Cc02_g20350 Coffea canephora HOM05D003513 ORTHO05D004660 6.5e-49 198.4 207 58.9
CsaV3_7G001360 Cucumis sativus L. HOM05D003513 ORTHO05D004660 1.1e-48 197.6 209 57.4
Prupe.8G155900 Prunus persica HOM05D003513 ORTHO05D004660 1.1e-48 197.6 212 59.4
Duzib052G1139 Durio zibethinus HOM05D003513 ORTHO05D004660 1.5e-48 197.2 214 59.8
Oeu010478.1 Olea europaea HOM05D003513 ORTHO05D004660 2.5e-48 196.4 227 52.4
Cfa003376 Carpinus fangiana HOM05D003513 ORTHO05D004660 5.5e-48 195.3 234 53.0
Duzib248G1448 Durio zibethinus HOM05D003513 ORTHO05D004660 9.4e-48 194.5 209 58.4
Cfa004752 Carpinus fangiana HOM05D003513 ORTHO05D004660 1.6e-47 193.7 204 57.8
Gohir.A03G213100 Gossypium hirsutum HOM05D003513 ORTHO05D004660 1.6e-47 193.7 211 56.9
TWI23G0398 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 1.6e-47 193.7 237 51.5
Gohir.D02G234600 Gossypium hirsutum HOM05D003513 ORTHO05D004660 2.1e-47 193.4 201 58.2
Manes.07G049900 Manihot esculenta HOM05D003513 ORTHO05D004660 3.6e-47 192.6 199 60.3
MD05G1110900 Malus domestica HOM05D003513 ORTHO05D004660 6.1e-47 191.8 210 56.7
Gorai.005G262600 Gossypium raimondii HOM05D003513 ORTHO05D004660 8.0e-47 191.4 206 56.8
Sed0007617 Sechium edule HOM05D003513 ORTHO05D004660 8.0e-47 191.4 207 58.5
DCAR_029853 Daucus carota HOM05D003513 ORTHO05D004660 1.0e-46 191.0 241 52.7
PSO384G0236 Papaver somniferum HOM05D003513 ORTHO05D004660 1.4e-46 190.7 212 54.7
MSTRG.8971 Avicennia marina HOM05D003513 ORTHO05D004660 1.8e-46 190.3 227 55.1
CANSAT11G1387 Cannabis sativa HOM05D003513 ORTHO05D004660 1.8e-46 190.3 210 55.7
PGR042G0778 Punica granatum HOM05D003513 ORTHO05D004660 1.8e-46 190.3 216 54.2
CiPaw.16G055200 Carya illinoinensis HOM05D003513 ORTHO05D004660 3.9e-46 189.1 211 57.8
Sopen01g048910 Solanum pennellii HOM05D003513 ORTHO05D004660 3.9e-46 189.1 236 54.7
EL10Ac4g09206 Beta vulgaris HOM05D003513 ORTHO05D004660 5.2e-46 188.7 228 54.4
RcHm_v2.0_Chr6g0247131 Rosa chinensis HOM05D003513 ORTHO05D004660 5.2e-46 188.7 211 55.9
Oeu059873.1 Olea europaea HOM05D003513 ORTHO05D004660 8.8e-46 188.0 226 52.2
Medtr2g010510 Medicago truncatula HOM05D003513 ORTHO05D004660 1.5e-45 187.2 207 54.6
MSTRG.8970 Avicennia marina HOM05D003513 ORTHO05D004660 3.3e-45 186.0 227 53.7
PSO339G4304 Papaver somniferum HOM05D003513 ORTHO05D004660 5.7e-45 185.3 213 52.1
Ciclev10028868m.g Citrus clementina HOM05D003513 ORTHO05D004660 7.4e-45 184.9 208 55.3
Solyc01g106560.4 Solanum lycopersicum HOM05D003513 ORTHO05D004660 7.4e-45 184.9 236 53.8
Sabra09G0063800 Salix brachista HOM05D003513 ORTHO05D004660 9.7e-45 184.5 218 53.2
Atru.chr4.2879 Acer truncatum HOM05D003513 ORTHO05D004660 2.2e-44 183.3 210 56.7
FAN27G0638 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.2e-44 183.3 211 54.5
PGSC0003DMG400005104 Solanum tuberosum HOM05D003513 ORTHO05D004660 3.7e-44 182.6 236 53.0
MBI18_g12443_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 4.8e-44 182.2 214 51.4
Peaxi162Scf00016g03328 Petunia axillaris HOM05D003513 ORTHO05D004660 4.8e-44 182.2 215 57.2
FAN24G3528 Fragaria x ananassa HOM05D003513 ORTHO05D004660 1.1e-43 181.0 229 51.5
MBI18_g04900_MAGBIO Magnolia biondii HOM05D003513 ORTHO05D004660 1.1e-43 181.0 234 47.9
Thecc.02G033900 Theobroma cacao HOM05D003513 ORTHO05D004660 1.8e-43 180.3 212 57.1
FvH4_2g02710 Fragaria vesca HOM05D003513 ORTHO05D004660 3.1e-43 179.5 214 53.7
Glyma.15G062000 Glycine max HOM05D003513 ORTHO05D004660 3.1e-43 179.5 257 46.3
Potri.009G082200 Populus trichocarpa HOM05D003513 ORTHO05D004660 3.1e-43 179.5 220 54.5
SGA_v2.0_scaffold32G12967 Striga asiatica HOM05D003513 ORTHO05D004660 4.1e-43 179.1 211 54.0
Sp3g05980 Schrenkiella parvula HOM05D003513 ORTHO05D004660 1.2e-42 177.6 209 52.6
Ca_00197_v3 Cicer arietinum L. HOM05D000871 ORTHO05D000770 1.6e-42 177.2 204 52.9
Aa31LG8G12720 Aethionema arabicum HOM05D003513 ORTHO05D004660 2.0e-42 176.8 211 53.1
FAN20G2897 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.0e-42 176.8 211 53.6
QL11p027784 Quercus lobata HOM05D003513 ORTHO05D004660 2.0e-42 176.8 234 50.9
unitig_0.g631 Utricularia gibba HOM05D003513 ORTHO05D004660 2.0e-42 176.8 208 54.8
FAN15G2646 Fragaria x ananassa HOM05D003513 ORTHO05D004660 2.6e-42 176.4 229 50.7
Nn4g22684 Nelumbo nucifera HOM05D003513 ORTHO05D004660 2.6e-42 176.4 334 38.9
Aqoxy5G03939 Aquilegia oxysepala HOM05D003513 ORTHO05D004660 3.5e-42 176.0 241 49.4
CiPaw.05G024600 Carya illinoinensis HOM05D003513 ORTHO05D004660 4.5e-42 175.6 227 53.7
Eucgr.I02512 Eucalyptus grandis HOM05D003513 ORTHO05D004660 5.9e-42 175.3 210 54.3
THA.LOC104807196 Tarenaya hassleriana HOM05D003513 ORTHO05D004660 1.3e-41 174.1 199 54.3
arahy.Tifrunner.gnm1.ann1.SQB86K Arachis hypogaea HOM05D003513 ORTHO05D004660 5.0e-41 172.2 243 47.3
arahy.Tifrunner.gnm1.ann1.2E8PRH Arachis hypogaea HOM05D003513 ORTHO05D004660 6.5e-41 171.8 243 47.3
AUR62005013 Chenopodium quinoa HOM05D003513 ORTHO05D004660 6.5e-41 171.8 202 54.5
Glyma.13G253000 Glycine max HOM05D003513 ORTHO05D004660 8.5e-41 171.4 252 45.2
Potri.001G287900 Populus trichocarpa HOM05D003513 ORTHO05D004660 8.5e-41 171.4 168 61.9
arahy.Tifrunner.gnm1.ann1.K4QFJX Arachis hypogaea HOM05D003513 ORTHO05D004660 1.1e-40 171.0 243 47.7
C03p42610 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-40 171.0 207 51.2
Psat1g212080 Pisum sativum HOM05D003513 ORTHO05D004660 1.1e-40 171.0 167 61.1
SalBow6G6243 Salvia bowleyana HOM05D003513 ORTHO05D004660 1.5e-40 170.6 231 52.8
VMungo0540G2261 Vigna mungo HOM05D003513 ORTHO05D004660 1.9e-40 170.2 249 48.2
Lj6g0027000 Lotus japonicus HOM05D003513 ORTHO05D004660 3.2e-40 169.5 249 47.0
Lalb_Chr18g0060191 Lupinus albus HOM05D003513 ORTHO05D004660 4.2e-40 169.1 258 44.6
Os07g0213400 Oryza sativa ssp. japonica HOM05D003513 ORTHO05D004660 1.6e-39 167.2 208 50.5
Lj1g0004946 Lotus japonicus HOM05D003513 ORTHO05D004660 2.1e-39 166.8 203 54.7
Carub.0003s2847 Capsella rubella HOM05D003513 ORTHO05D004660 6.1e-39 165.2 200 50.5
Zm00001eb325060 Zea mays HOM05D003513 ORTHO05D004660 1.8e-38 163.7 203 52.2
arahy.Tifrunner.gnm1.ann1.C4ZNB5 Arachis hypogaea HOM05D003513 ORTHO05D004660 4.0e-38 162.5 248 44.4
A03p35030 Brassica napus HOM05D003513 ORTHO05D004660 2.0e-37 160.2 207 50.7
Lj6g0027758 Lotus japonicus HOM05D003513 ORTHO05D004660 2.0e-37 160.2 209 50.2
BcaB07g32937 Brassica carinata HOM05D003513 ORTHO05D004660 4.4e-37 159.1 178 56.7
BolC3t16531H Brassica oleracea HOM05D003513 ORTHO05D004660 1.7e-36 157.1 209 49.3
BraA03t12683Z Brassica rapa HOM05D003513 ORTHO05D004660 2.2e-36 156.8 207 49.3
AL7G17790 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 6.3e-36 155.2 214 49.5
MD10G1114400 Malus domestica HOM05D003513 ORTHO05D004660 6.3e-36 155.2 216 50.5
AUR62000955 Chenopodium quinoa HOM05D003513 ORTHO05D004660 8.3e-36 154.8 202 49.5
HPP92_011751 Vanilla planifolia HOM05D003513 ORTHO05D004660 8.3e-36 154.8 217 46.1
AL3G45960 Arabidopsis lyrata HOM05D003513 ORTHO05D004660 2.4e-35 153.3 209 47.8
ATR0681G195 Amborella trichopoda HOM05D003513 ORTHO05D004660 5.3e-35 152.1 252 39.7
Sp7g31420 Schrenkiella parvula HOM05D003513 ORTHO05D004660 2.0e-34 150.2 220 45.5
SHI04900 Sapria himalayana HOM05D003513 ORTHO05D004660 3.5e-34 149.4 172 55.8
Mapoly0037s0029 Marchantia polymorpha HOM05D003513 ORTHO05D004660 1.0e-33 147.9 199 48.7
Dinv03362 Davidia involucrata HOM05D003513 ORTHO05D004660 2.2e-33 146.7 150 62.0
BraA01t00446Z Brassica rapa HOM05D003513 ORTHO05D004660 6.5e-33 145.2 216 46.8
C01p05020 Brassica napus HOM05D003513 ORTHO05D004660 5.5e-32 142.1 214 44.9
BcaC09g52179 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-31 141.0 216 44.4
BolC1t00484H Brassica oleracea HOM05D003513 ORTHO05D004660 1.2e-31 141.0 216 44.4
Cpa.g.sc20.72 Carica papaya HOM05D003513 ORTHO05D004660 1.2e-31 141.0 149 59.7
AT4G33690 Arabidopsis thaliana HOM05D003513 ORTHO05D004660 3.6e-31 139.4 206 45.6
SEGI_16177 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 4.7e-31 139.0 247 38.9
A01p04630 Brassica napus HOM05D003513 ORTHO05D004660 8.0e-31 138.3 222 44.6
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 1.4e-30 137.5 195 47.7
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 1.8e-30 137.1 164 53.0
CDE04G2077 Ceratophyllum demersum HOM05D000016 ORTHO05D000538 3.0e-30 136.3 196 45.4
Atru.chr5.2163 Acer truncatum HOM05D003513 ORTHO05D004660 6.8e-30 135.2 155 58.1
CDE07G1727 Ceratophyllum demersum HOM05D003513 ORTHO05D004660 8.8e-30 134.8 229 41.5
Sabra16G0180200 Salix brachista HOM05D003513 ORTHO05D004660 8.8e-30 134.8 244 44.7
SMO119G0189 Selaginella moellendorffii HOM05D003513 ORTHO05D004660 1.7e-28 130.6 190 43.7
HPP92_025257 Vanilla planifolia HOM05D003513 ORTHO05D004660 1.7e-28 130.6 170 47.6
A05p21550 Brassica napus HOM05D003513 ORTHO05D004660 2.4e-27 126.7 184 48.9
BraA05t21075Z Brassica rapa HOM05D003513 ORTHO05D004660 2.4e-27 126.7 184 48.9
Pp3c17_21630 Physcomitrium patens HOM05D003513 ORTHO05D004660 1.2e-26 124.4 188 40.4
SEGI_38183 Sequoiadendron giganteum HOM05D003513 ORTHO05D004660 1.6e-26 124.0 234 38.9
Nitab4.5_0001477g0150 Nicotiana tabacum HOM05D003513 ORTHO05D004660 4.5e-26 122.5 231 42.4
AagrBONN_evm.TU.Sc2ySwM_289.2 Anthoceros agrestis HOM05D003513 ORTHO05D004660 5.9e-26 122.1 262 37.8
AagrBONN_evm.TU.Sc2ySwM_362.2667 Anthoceros agrestis HOM05D003513 ORTHO05D004660 5.9e-26 122.1 262 37.8
Carub.0007s0673 Capsella rubella HOM05D003513 ORTHO05D004660 1.3e-25 120.9 98 66.3
BcaB04g17698 Brassica carinata HOM05D003513 ORTHO05D004660 1.2e-23 114.4 192 45.3
BcaB02g10961 Brassica carinata HOM05D003513 ORTHO05D004660 1.0e-22 111.3 75 76.0
BcaC08g44431 Brassica carinata HOM05D003513 ORTHO05D013524 1.0e-22 111.3 186 44.6
A04p04130 Brassica napus HOM05D003513 ORTHO05D004660 1.8e-22 110.5 188 44.1
A09p29610 Brassica napus HOM05D003513 ORTHO05D004660 2.6e-21 106.7 183 43.2
Migut.B00497 Erythranthe guttata HOM05D003513 ORTHO05D004660 4.4e-21 105.9 160 45.0
Glyma.07G229300 Glycine max HOM05D003513 ORTHO05D004660 1.7e-20 104.0 73 71.2
Nitab4.5_0007763g0010 Nicotiana tabacum HOM05D003513 ORTHO05D004660 6.3e-20 102.1 157 46.5
BraA03t15374Z Brassica rapa HOM05D003513 ORTHO05D004660 8.3e-20 101.7 188 41.5
TAR629G2534 Trochodendron aralioides HOM05D003513 ORTHO05D004660 8.3e-20 101.7 116 58.6
Sc21g0000900 Simmondsia chinensis HOM05D003513 ORTHO05D004660 1.8e-19 100.5 161 44.7
Hund24144 Selenicereus undatus HOM05D003513 ORTHO05D004660 2.4e-19 100.1 151 45.7
A08p11320 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-17 94.7 63 74.6
A10p16400 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-17 94.7 63 74.6
C06p15560 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-17 94.7 63 74.6
C08p23080 Brassica napus HOM05D003513 ORTHO05D004660 1.0e-17 94.7 63 74.6
CAN.G192.6 Capsicum annuum HOM05D003513 ORTHO05D004660 2.3e-17 93.6 168 41.7
A09p33590 Brassica napus HOM05D003513 ORTHO05D004660 3.9e-17 92.8 56 82.1
C06p18710 Brassica napus HOM05D003513 ORTHO05D004660 5.0e-17 92.4 58 79.3
CARHR105270 Cardamine hirsuta HOM05D003513 ORTHO05D004660 6.6e-17 92.0 138 44.2
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-16 91.3 56 80.4
A03p66860 Brassica napus HOM05D003513 ORTHO05D004660 1.5e-16 90.9 76 64.5
Thhalv10021452m.g Eutrema salsugineum HOM05D003513 ORTHO05D004660 1.9e-16 90.5 141 43.3
BraA09t38150Z Brassica rapa HOM05D003513 ORTHO05D004660 2.5e-16 90.1 75 65.3
BolC8t52234H Brassica oleracea HOM05D003513 ORTHO05D004660 5.6e-16 89.0 170 41.8
C08p46960 Brassica napus HOM05D003513 ORTHO05D013524 6.1e-15 85.5 170 41.2
C01p31670 Brassica napus HOM05D003513 ORTHO05D015800 8.9e-14 81.6 54 74.1
Eucgr.L02047 Eucalyptus grandis HOM05D003513 ORTHO05D004660 3.4e-13 79.7 145 42.1
TPR.G22787 Trifolium pratense HOM05D003513 ORTHO05D004660 3.4e-13 79.7 143 45.5
Gohir.A01G179633 Gossypium hirsutum HOM05D003513 ORTHO05D004660 9.8e-13 78.2 51 76.5
Phvul.006G197800 Phaseolus vulgaris HOM05D003513 ORTHO05D004660 4.9e-12 75.9 89 53.9
Zm00001eb303370 Zea mays HOM05D003513 ORTHO05D004660 6.4e-12 75.5 126 41.3
A05p23280 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-11 74.7 46 78.3
BraA05t21192Z Brassica rapa HOM05D003513 ORTHO05D004660 1.1e-11 74.7 46 78.3
Gorai.002G212100 Gossypium raimondii HOM05D003513 ORTHO05D004660 2.4e-11 73.6 51 74.5
TAR636G1841 Trochodendron aralioides HOM05D003513 ORTHO05D004660 2.5e-08 63.5 88 47.7
BcaB05g23799 Brassica carinata HOM05D003513 ORTHO05D004660 3.3e-08 63.2 129 39.5
TWI59G0638 Tripterygium wilfordii HOM05D003513 ORTHO05D004660 9.5e-08 61.6 113 38.1
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 4.7e-07 59.3 78 46.2
BolC1t03102H Brassica oleracea HOM05D003531 ORTHO05D015800 8.0e-07 58.5 38 71.1
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 1.1e-06 58.2 97 41.2
Dinv09506 Davidia involucrata HOM05D003513 ORTHO05D004660 1.8e-06 57.4 68 42.6
C09p21920 Brassica napus HOM05D001670 ORTHO05D015800 4.0e-06 56.2 50 58.0
Gohir.A10G119000 Gossypium hirsutum HOM05D001046 ORTHO05D005883 4.0e-06 56.2 63 50.8


User provided reference genes

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