Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 2120.5 1069 100.0
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1937.2 1079 91.0
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1904.0 1068 90.5
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1814.3 1084 83.9
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1779.2 1078 82.0
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1768.8 1080 82.1
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1765.4 1084 80.6
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1763.8 1102 80.7
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1754.2 1082 81.1
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1751.9 1085 80.6
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1749.6 1086 81.1
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1748.8 1083 80.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1747.3 1079 80.3
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1742.6 1082 80.1
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1741.1 1076 80.5
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1740.7 1076 80.6
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1736.1 1091 80.3
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1735.7 1076 80.4
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1734.9 1091 80.0
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1731.8 1075 79.8
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1730.3 1091 79.7
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1728.0 1084 79.6
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1727.6 1088 79.6
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1727.6 1083 80.2
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1724.9 1078 80.1
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1724.9 1090 79.2
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1722.6 1083 79.0
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1719.9 1090 78.9
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1719.1 1077 80.3
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1718.0 1073 80.1
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1716.4 1043 80.9
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1714.5 1087 78.9
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1711.4 1094 78.6
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1707.6 1010 82.7
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1706.8 1090 78.1
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 1704.9 1089 78.5
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1704.1 1090 79.3
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1703.3 1088 78.8
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1699.9 1103 78.2
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1696.8 1076 77.7
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1696.8 1126 75.8
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1694.5 1077 78.3
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1691.0 1100 77.2
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1690.6 1014 82.1
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1686.4 1090 78.3
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1685.6 1088 77.3
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1684.8 1094 78.6
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1683.3 1077 79.1
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1679.1 1091 76.7
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1679.1 1086 77.4
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1679.1 1177 72.7
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1678.3 1086 77.2
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1675.6 1078 78.7
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1674.8 1088 77.7
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1673.7 1074 77.6
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1667.5 1073 77.2
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1090 77.3
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1666.0 1086 76.6
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1080 76.2
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1659.0 1069 77.9
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1657.5 1117 74.3
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1081 76.2
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1086 76.5
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1656.3 1082 76.3
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1653.6 1006 80.2
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1652.1 1084 75.9
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1006 80.1
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1645.2 1196 71.9
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1638.2 1167 72.8
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1634.8 1067 76.0
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1633.6 1006 78.9
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1631.7 1061 76.2
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1629.8 1063 76.2
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1629.0 1075 75.5
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1625.5 1082 75.5
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1082 75.2
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1005 79.7
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1624.4 1080 75.2
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1624.0 1083 74.8
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1621.7 1046 76.0
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1620.5 1074 74.5
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1618.2 1063 75.8
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1617.8 1063 75.8
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1617.4 1085 74.7
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1617.1 1094 73.8
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1615.5 1080 74.1
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1614.7 1082 74.3
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1614.7 1063 75.6
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1614.7 1087 74.7
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1614.0 1082 75.1
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1612.4 1082 74.1
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1612.0 1079 74.5
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1610.5 1082 74.5
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 1079 74.3
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1608.2 1082 74.4
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1607.8 1079 73.8
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1606.3 1078 74.4
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1603.2 1087 73.6
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1601.6 1070 75.7
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1597.8 1116 73.6
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1593.2 1074 75.0
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1587.8 1065 74.6
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1587.4 1112 72.8
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1586.2 1137 70.5
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1578.9 1079 73.7
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1535.4 869 87.5
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1503.0 969 76.1
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1496.1 1116 69.5
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1491.1 914 79.5
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1490.7 1009 74.0
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1480.3 1091 70.8
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1449.1 1003 69.6
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1428.3 1001 67.8
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1374.8 1102 66.3
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1374.0 1102 66.2
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1353.2 801 82.4
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1351.3 957 67.5
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1291.6 1010 64.0
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1210.7 1044 59.4
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1207.2 748 80.1
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1189.1 846 70.9
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1144.8 753 77.2
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1122.5 722 76.5
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1119.4 1038 54.5
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1108.2 981 55.6
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1090.1 998 54.6
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1079.3 739 73.7
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 8.9e-284 980.7 881 57.4
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 9.5e-278 960.7 879 59.7
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 7.6e-267 924.5 596 78.9
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.3e-263 913.7 777 58.3
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 5.8e-259 898.3 580 74.0
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 2.4e-244 849.7 978 45.1
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 4.6e-232 808.9 645 65.0
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 6.7e-223 778.5 693 58.9
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.2e-211 741.1 671 55.3
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 1.3e-205 721.1 444 82.0
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.8e-184 650.2 532 65.2
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 1.8e-175 620.9 387 78.0
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.0e-171 607.4 502 66.1
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.6e-170 602.4 413 73.4
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 1.5e-166 591.3 393 71.8
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.1e-160 570.9 470 66.0
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 1.1e-156 558.5 1036 36.2
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 3.3e-153 547.0 339 80.8
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.0e-134 484.6 402 65.2
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 9.9e-134 482.3 397 62.5
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.4e-129 466.1 327 68.2
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 7.4e-129 466.1 309 71.8
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 5.5e-108 396.7 953 30.1
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 4.3e-105 387.1 227 83.3
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 5.7e-105 386.7 277 73.3
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 3.1e-103 380.9 887 31.2
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 7.7e-102 376.3 953 29.0
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 8.8e-90 336.3 880 30.2
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 2.8e-80 304.7 154 89.6
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 8.3e-56 223.4 222 50.9
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 9.2e-55 219.9 863 23.3
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 3.9e-53 214.5 310 44.2
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 1.9e-52 212.2 332 35.2
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 5.4e-47 194.1 124 79.0
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 2.5e-44 185.3 146 60.3
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 8.1e-43 180.3 220 50.5
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.1e-42 179.9 150 58.0
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 8.9e-42 176.8 149 67.8
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 4.9e-40 171.0 155 60.6
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 9.2e-39 166.8 273 37.7
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 6.6e-37 160.6 461 28.0
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 1.5e-36 159.5 149 56.4
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.4e-34 152.9 125 64.0
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 7.6e-33 147.1 162 43.8
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.1e-30 139.0 425 27.1
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 1.8e-26 125.9 111 55.0
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 1.0e-21 110.2 97 55.7
CBR_g53548 Chara braunii HOM05D003855 ORTHO05D004722 1.7e-21 109.4 296 25.3
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 6.2e-19 100.9 83 66.3
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 1.1e-12 80.1 61 62.3
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 1.1e-12 80.1 45 82.2
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 4.8e-11 74.7 124 38.7
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 4.0e-10 71.6 48 66.7
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 1.2e-09 70.1 166 36.7
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 1.0e-08 67.0 36 86.1
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 6.5e-08 64.3 77 45.5


User provided reference genes

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