Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA233G2813 Erigeron canadensis HOM05D004955 ORTHO05D005965 4.6e-302 1040.4 520 100.0
HanXRQChr14g0455871 Helianthus annuus HOM05D004955 ORTHO05D005965 8.6e-232 807.0 529 78.1
Lsat_1_v5_gn_6_66461 Lactuca sativa HOM05D004955 ORTHO05D005965 2.0e-228 795.8 551 75.5
Dinv28916 Davidia involucrata HOM05D004955 ORTHO05D005965 5.4e-218 761.1 560 70.0
QL12p007112 Quercus lobata HOM05D004955 ORTHO05D005965 1.6e-214 749.6 561 69.2
Rhsim09G0128800 Rhododendron simsii HOM05D004955 ORTHO05D005965 2.6e-212 742.3 560 68.6
CSS0027312 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 7.5e-212 740.7 561 67.4
CSS0030337 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 7.5e-212 740.7 560 67.5
Ciclev10031124m.g Citrus clementina HOM05D004955 ORTHO05D005965 1.6e-209 733.0 559 67.1
FvH4_5g21180 Fragaria vesca HOM05D004955 ORTHO05D005965 1.6e-209 733.0 556 67.3
MD06G1040100 Malus domestica HOM05D004955 ORTHO05D005965 3.5e-209 731.9 562 67.1
vmacro21668 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 3.5e-209 731.9 559 67.4
RcHm_v2.0_Chr7g0208321 Rosa chinensis HOM05D004955 ORTHO05D005965 4.6e-209 731.5 561 67.0
Lj3A396G10 Lonicera japonica HOM05D004955 ORTHO05D005965 1.3e-208 729.9 559 67.4
DCAR_005602 Daucus carota HOM05D004955 ORTHO05D005965 8.6e-208 727.2 555 66.7
TWI81G0724 Tripterygium wilfordii HOM05D004955 ORTHO05D005965 8.6e-208 727.2 559 67.1
Nitab4.5_0002055g0140 Nicotiana tabacum HOM05D004955 ORTHO05D005965 4.3e-207 724.9 560 66.1
Potri.001G146900 Populus trichocarpa HOM05D004955 ORTHO05D005965 5.6e-207 724.5 561 67.0
FAN18G2324 Fragaria x ananassa HOM05D004955 ORTHO05D005965 9.5e-207 723.8 575 65.2
GSVIVG01013229001 Vitis vinifera HOM05D004955 ORTHO05D005965 1.6e-206 723.0 560 67.0
FAN08G3652 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.8e-206 722.2 557 66.8
TAR375G0042 Trochodendron aralioides HOM05D004955 ORTHO05D005965 3.6e-206 721.8 561 66.8
Prupe.5G046300 Prunus persica HOM05D004955 ORTHO05D005965 1.1e-205 720.3 561 66.0
Sopen08g025850 Solanum pennellii HOM05D004955 ORTHO05D005965 3.1e-205 718.8 563 65.9
GSVIVG01011242001 Vitis vinifera HOM05D004955 ORTHO05D005965 1.5e-204 716.5 560 66.1
Ca_24631_v3 Cicer arietinum L. HOM05D004955 ORTHO05D005965 4.4e-204 714.9 560 65.7
Duzib213G0438 Durio zibethinus HOM05D004955 ORTHO05D005965 7.6e-204 714.1 560 65.0
Solyc08g077270.4 Solanum lycopersicum HOM05D004955 ORTHO05D005965 7.6e-204 714.1 563 65.5
Nn1g00613 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.2e-203 712.6 560 67.5
arahy.Tifrunner.gnm1.ann1.JVPY2N Arachis hypogaea HOM05D004955 ORTHO05D005965 4.9e-203 711.4 555 65.9
arahy.Tifrunner.gnm1.ann1.U6D9EY Arachis hypogaea HOM05D004955 ORTHO05D005965 4.9e-203 711.4 555 65.9
COL.COLO4_17563 Corchorus olitorius HOM05D004955 ORTHO05D005965 6.4e-203 711.1 560 65.2
Sabra01G0115600 Salix brachista HOM05D004955 ORTHO05D005965 6.4e-203 711.1 561 66.5
Glyma.20G095000 Glycine max HOM05D004955 ORTHO05D005965 8.3e-203 710.7 560 65.2
CiPaw.12G060300 Carya illinoinensis HOM05D004955 ORTHO05D005965 2.4e-202 709.1 558 65.6
Gohir.A01G044000 Gossypium hirsutum HOM05D004955 ORTHO05D005965 4.1e-202 708.4 560 64.8
Psat2g174720 Pisum sativum HOM05D004955 ORTHO05D005965 7.1e-202 707.6 560 65.4
Lj2g0012431 Lotus japonicus HOM05D004955 ORTHO05D005965 9.2e-202 707.2 552 64.7
Thecc.07G110200 Theobroma cacao HOM05D004955 ORTHO05D005965 1.6e-201 706.4 560 65.2
Glyma.07G096600 Glycine max HOM05D004955 ORTHO05D005965 2.1e-201 706.1 562 65.5
Migut.E00912 Erythranthe guttata HOM05D004955 ORTHO05D005965 3.5e-201 705.3 553 66.4
VMungo1215G2917 Vigna mungo HOM05D004955 ORTHO05D005965 3.5e-201 705.3 560 65.5
CAN.G799.17 Capsicum annuum HOM05D004955 ORTHO05D005965 6.0e-201 704.5 560 65.0
Gorai.002G043000 Gossypium raimondii HOM05D004955 ORTHO05D005965 6.0e-201 704.5 560 64.5
Oeu039341.2 Olea europaea HOM05D004955 ORTHO05D005965 6.0e-201 704.5 583 63.5
MSTRG.1970 Avicennia marina HOM05D004955 ORTHO05D005965 7.8e-201 704.1 560 64.6
FAN13G2236 Fragaria x ananassa HOM05D004955 ORTHO05D005965 7.8e-201 704.1 577 64.1
EL10Ac5g12196 Beta vulgaris HOM05D004955 ORTHO05D005965 1.7e-200 703.0 558 64.2
Peaxi162Scf00084g00922 Petunia axillaris HOM05D004955 ORTHO05D005965 3.0e-200 702.2 587 61.8
SalBow6G1446 Salvia bowleyana HOM05D004955 ORTHO05D005965 3.0e-200 702.2 560 63.6
Gohir.D01G034800 Gossypium hirsutum HOM05D004955 ORTHO05D005965 3.9e-200 701.8 560 64.1
Migut.E00798 Erythranthe guttata HOM05D004955 ORTHO05D005965 6.6e-200 701.0 553 66.0
CsaV3_1G038770 Cucumis sativus L. HOM05D004955 ORTHO05D005965 4.3e-199 698.4 565 64.2
FAN04G2254 Fragaria x ananassa HOM05D004955 ORTHO05D005965 2.8e-198 695.7 556 65.8
Phvul.002G003600 Phaseolus vulgaris HOM05D004955 ORTHO05D005965 3.6e-198 695.3 560 64.6
PGR031G1993 Punica granatum HOM05D004955 ORTHO05D005965 8.1e-198 694.1 559 64.4
vmacro00352 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 1.1e-197 693.7 535 67.7
Medtr5g013970 Medicago truncatula HOM05D004955 ORTHO05D005965 1.4e-197 693.3 555 63.8
Sc07g0008830 Simmondsia chinensis HOM05D004955 ORTHO05D005965 1.2e-196 690.3 560 64.5
Hund14430 Selenicereus undatus HOM05D004955 ORTHO05D005965 1.5e-196 689.9 570 64.9
Eucgr.D02153 Eucalyptus grandis HOM05D004955 ORTHO05D005965 3.4e-196 688.7 551 65.2
Sed0006321 Sechium edule HOM05D004955 ORTHO05D005965 3.4e-196 688.7 560 64.1
Cc05_g03300 Coffea canephora HOM05D004955 ORTHO05D005965 7.6e-196 687.6 557 64.5
MELO3C015301.2 Cucumis melo HOM05D004955 ORTHO05D005965 7.6e-196 687.6 565 63.5
MBI04_g44837_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 9.9e-196 687.2 576 63.2
CSS0006893 Camellia sinensis var. sinensis HOM05D004955 ORTHO05D005965 2.9e-195 685.6 488 70.3
Cpa.g.sc39.114 Carica papaya HOM05D004955 ORTHO05D005965 3.8e-195 685.3 560 64.5
Atru.BG.31.p Acer truncatum HOM05D004955 ORTHO05D005965 4.9e-195 684.9 534 66.5
Nitab4.5_0006693g0050 Nicotiana tabacum HOM05D004955 ORTHO05D005965 2.7e-193 679.1 494 69.4
MD16G1269200 Malus domestica HOM05D004955 ORTHO05D005965 4.6e-193 678.3 568 63.2
PSO063G1154 Papaver somniferum HOM05D004955 ORTHO05D005965 1.7e-192 676.4 556 62.6
Lalb_Chr16g0379231 Lupinus albus HOM05D004955 ORTHO05D005965 6.6e-192 674.5 494 69.4
PGSC0003DMG400024224 Solanum tuberosum HOM05D004955 ORTHO05D005965 6.6e-192 674.5 497 68.8
PSO017G5366 Papaver somniferum HOM05D004955 ORTHO05D005965 8.7e-192 674.1 556 62.4
Aqoxy3G03106 Aquilegia oxysepala HOM05D004955 ORTHO05D005965 1.5e-191 673.3 582 61.0
AUR62018770 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.3e-190 670.2 560 62.9
AUR62007230 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.1e-189 667.2 560 62.5
CANSAT80G1132 Cannabis sativa HOM05D004955 ORTHO05D005965 1.4e-189 666.8 554 63.0
PSO541G5086 Papaver somniferum HOM05D004955 ORTHO05D005965 3.1e-189 665.6 556 61.5
Actinidia25945 Actinidia chinensis HOM05D004955 ORTHO05D005965 1.3e-187 660.2 551 63.3
THA.LOC104814429 Tarenaya hassleriana HOM05D004955 ORTHO05D005965 3.8e-187 658.7 553 62.0
MBI04_g29834_MAGBIO Magnolia biondii HOM05D004955 ORTHO05D005965 7.1e-186 654.4 566 61.5
Aa31LG9G15390 Aethionema arabicum HOM05D004955 ORTHO05D005965 1.6e-185 653.3 558 61.8
CARHR195050 Cardamine hirsuta HOM05D004955 ORTHO05D005965 4.6e-185 651.7 556 62.4
ClCG03G017340 Citrullus lanatus HOM05D004955 ORTHO05D005965 6.0e-185 651.4 559 60.8
Thhalv10013080m.g Eutrema salsugineum HOM05D004955 ORTHO05D005965 2.3e-184 649.4 557 62.3
ATR0829G014 Amborella trichopoda HOM05D004955 ORTHO05D005965 8.7e-184 647.5 555 59.6
AUR62001104 Chenopodium quinoa HOM05D004955 ORTHO05D005965 1.1e-183 647.1 562 61.6
AT5G18070 Arabidopsis thaliana HOM05D004955 ORTHO05D005965 1.5e-183 646.7 557 61.4
Manes.15G172800 Manihot esculenta HOM05D004955 ORTHO05D005965 5.6e-183 644.8 506 67.0
AL6G29260 Arabidopsis lyrata HOM05D004955 ORTHO05D005965 7.3e-183 644.4 554 61.6
SGA_v2.0_scaffold18G08384 Striga asiatica HOM05D004955 ORTHO05D005965 7.3e-183 644.4 490 67.3
Carub.0006s1636 Capsella rubella HOM05D004955 ORTHO05D005965 1.3e-182 643.7 559 61.0
Sp6g26230 Schrenkiella parvula HOM05D004955 ORTHO05D005965 1.6e-182 643.3 557 62.1
Haze_07894 Corylus avellana HOM05D004955 ORTHO05D005965 6.9e-181 637.9 561 60.4
BraA10t44206Z Brassica rapa HOM05D004955 ORTHO05D005965 9.0e-181 637.5 549 61.2
C09p58920 Brassica napus HOM05D004955 ORTHO05D005965 1.2e-180 637.1 549 61.4
BcaC04g18728 Brassica carinata HOM05D004955 ORTHO05D005965 5.8e-180 634.8 549 61.6
BolC9t58736H Brassica oleracea HOM05D004955 ORTHO05D005965 5.8e-180 634.8 549 61.7
HPP92_017500 Vanilla planifolia HOM05D004955 ORTHO05D005965 6.4e-179 631.3 558 59.1
BraA03t10187Z Brassica rapa HOM05D004955 ORTHO05D005965 1.6e-177 626.7 549 59.7
C03p10070 Brassica napus HOM05D004955 ORTHO05D005965 2.7e-177 625.9 549 59.9
A10p21440 Brassica napus HOM05D004955 ORTHO05D005965 1.3e-176 623.6 550 60.4
A03p08630 Brassica napus HOM05D004955 ORTHO05D005965 8.1e-174 614.4 548 59.3
BcaB01g05173 Brassica carinata HOM05D004955 ORTHO05D005965 5.3e-173 611.7 552 59.2
BolC3t13493H Brassica oleracea HOM05D004955 ORTHO05D005965 5.3e-173 611.7 552 59.2
Zm00001eb119880 Zea mays HOM05D004955 ORTHO05D005965 1.3e-171 607.1 550 56.4
Os07g0195400 Oryza sativa ssp. japonica HOM05D004955 ORTHO05D005965 3.2e-170 602.4 536 57.5
SEGI_00537 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 7.4e-167 591.3 549 57.6
unitig_21.g20378 Utricularia gibba HOM05D004955 ORTHO05D005965 7.1e-162 574.7 543 57.5
SHI01417 Sapria himalayana HOM05D004955 ORTHO05D005965 3.9e-160 568.9 439 66.3
Haze_08303 Corylus avellana HOM05D004955 ORTHO05D005965 3.7e-158 562.4 428 68.2
BcaB08g36711 Brassica carinata HOM05D004955 ORTHO05D005965 2.6e-156 556.2 551 55.5
Dinv25184 Davidia involucrata HOM05D004955 ORTHO05D005965 3.6e-145 519.2 400 68.0
Pp3c15_140 Physcomitrium patens HOM05D004955 ORTHO05D005965 3.0e-144 516.2 563 50.8
Haze_08299 Corylus avellana HOM05D004955 ORTHO05D005965 9.4e-138 494.6 505 54.3
AagrBONN_evm.TU.Sc2ySwM_362.507 Anthoceros agrestis HOM05D004955 ORTHO05D005965 3.0e-136 489.6 550 49.8
Mapoly0074s0077 Marchantia polymorpha HOM05D004955 ORTHO05D005965 4.4e-135 485.7 561 48.0
SGA_v2.0_scaffold157G37418 Striga asiatica HOM05D004955 ORTHO05D005965 4.8e-134 482.3 427 60.0
Atru.chr6.1775 Acer truncatum HOM05D004955 ORTHO05D005965 7.7e-132 474.9 361 68.7
SMO174G0171 Selaginella moellendorffii HOM05D004955 ORTHO05D005965 1.1e-130 471.1 538 49.3
CBR_g36832 Chara braunii HOM05D004955 ORTHO05D005965 8.0e-129 464.9 571 48.0
CDE08G0647 Ceratophyllum demersum HOM05D004955 ORTHO05D005965 2.8e-126 456.4 403 58.3
Glyma.01G201400 Glycine max HOM05D004955 ORTHO05D005965 8.0e-113 411.8 298 71.5
Haze_08304 Corylus avellana HOM05D004955 ORTHO05D005965 7.5e-111 405.2 403 55.8
PRCOL_00000375 Prasinoderma coloniale HOM05D004955 ORTHO05D005965 9.2e-109 398.3 537 45.6
MCO08G085 Micromonas commoda HOM05D004955 ORTHO05D005965 1.0e-104 384.8 566 41.7
Cre08.g379700 Chlamydomonas reinhardtii HOM05D004955 ORTHO05D005965 2.9e-102 376.7 532 43.6
TPR.G6765 Trifolium pratense HOM05D004955 ORTHO05D005965 1.3e-86 324.7 559 38.8
Nn3g19414 Nelumbo nucifera HOM05D004955 ORTHO05D005965 2.9e-86 323.6 281 61.9
Glyma.16G093333 Glycine max HOM05D004955 ORTHO05D005965 1.6e-68 264.6 199 68.3
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 4.8e-65 253.1 477 37.3
MD09G1284100 Malus domestica HOM05D004955 ORTHO05D005965 1.3e-54 218.4 368 42.9
Haze_26496 Corylus avellana HOM05D004955 ORTHO05D005965 1.8e-51 208.0 275 44.0
BcaB01g01790 Brassica carinata HOM05D004955 ORTHO05D005965 2.6e-39 167.5 144 59.7
Haze_08302 Corylus avellana HOM05D004955 ORTHO05D005965 1.1e-37 162.2 195 51.3
SEGI_27182 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.0e-35 155.6 265 37.7
Glyma.16G093267 Glycine max HOM05D004955 ORTHO05D005965 3.1e-32 144.1 142 52.8
BcaB01g06395 Brassica carinata HOM05D004955 ORTHO05D005965 4.5e-31 140.2 100 69.0
Glyma.01G201300 Glycine max HOM05D004955 ORTHO05D005965 3.9e-27 127.1 142 49.3
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 3.1e-24 117.5 131 51.9
Cc05_g03290 Coffea canephora HOM05D004955 ORTHO05D005965 6.5e-22 109.8 114 46.5
Glyma.16G093100 Glycine max HOM05D004955 ORTHO05D005965 4.2e-21 107.1 77 64.9
CARHR185470 Cardamine hirsuta HOM05D004955 ORTHO05D005965 1.7e-17 95.1 76 61.8
Haze_08300 Corylus avellana HOM05D004955 ORTHO05D005965 1.7e-17 95.1 84 63.1
SHI01420 Sapria himalayana HOM05D004955 ORTHO05D000023 1.7e-17 95.1 108 49.1
ATR0149G020 Amborella trichopoda HOM05D004955 ORTHO05D005965 5.3e-16 90.1 83 54.2
Ah.04g153990 Amaranthus hybridus HOM05D004955 ORTHO05D005965 4.5e-15 87.0 202 30.7
vmacro21667 Vaccinium macrocarpon HOM05D004955 ORTHO05D005965 6.5e-14 83.2 136 39.7
SEGI_05540 Sequoiadendron giganteum HOM05D004955 ORTHO05D005965 1.2e-07 62.4 51 54.9


User provided reference genes

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