Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 2318.1 1218 100.0
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1686.0 1234 74.6
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 0.0e+00 1517.3 1252 67.9
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1347.0 1244 61.0
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1296.2 1235 60.2
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1290.4 1342 56.6
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1287.7 1280 57.3
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1276.9 1239 57.2
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1273.1 1336 55.8
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1264.2 1056 63.7
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1250.7 1267 57.1
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1248.8 1221 58.0
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1246.1 1229 58.0
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1243.8 1296 55.2
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1241.1 1255 56.8
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1228.8 1042 62.8
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1227.6 1221 58.2
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1224.9 1231 57.0
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1224.9 1049 62.2
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1223.0 1231 57.0
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1222.6 1224 56.9
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1222.6 1226 56.6
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1219.9 956 67.1
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1214.1 1239 55.7
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1214.1 1227 57.4
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1213.0 1077 62.4
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1212.6 1049 62.0
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1211.4 1239 55.6
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1209.9 913 69.6
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1206.0 1052 61.7
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1203.3 1055 60.3
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1197.2 1209 56.3
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1193.7 1049 60.9
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1193.3 1256 56.4
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1192.2 1279 53.2
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1184.5 1218 54.6
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1183.3 1321 54.2
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1175.6 1230 56.1
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1174.1 1235 55.8
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1172.5 1225 55.1
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1170.2 1220 54.3
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1166.8 1216 55.1
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1162.9 1231 54.5
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1161.0 1237 55.7
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1160.6 1037 60.6
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1160.2 1037 60.8
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1160.2 1215 54.6
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1158.7 1242 54.1
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1157.9 1268 53.3
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1157.9 1054 60.2
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1157.5 1288 51.8
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1157.5 1177 57.0
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1155.6 1040 60.6
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1155.2 1089 58.4
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 0.0e+00 1154.4 1264 54.7
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1153.7 935 65.1
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1152.1 1217 54.2
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1143.6 1230 53.3
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1137.9 915 65.1
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1133.2 880 68.1
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1126.3 1003 61.1
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1122.1 1042 59.9
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 0.0e+00 1095.5 1002 58.5
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1089.3 1119 55.2
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1088.2 1113 55.4
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1085.5 1088 56.4
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1080.9 1226 52.8
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1080.1 1004 60.6
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1079.3 1173 53.6
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1078.9 1235 53.4
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 8.3e-312 1074.3 1091 56.8
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 2.2e-310 1069.3 1009 60.2
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 3.7e-310 1068.5 873 65.1
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 4.8e-310 1068.1 836 68.9
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 4.5e-308 1061.6 1275 50.1
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.9e-306 1056.2 811 69.1
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 3.0e-304 1048.9 1036 56.9
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 8.2e-302 1040.8 1059 57.2
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.1e-301 1040.4 812 67.5
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.3e-280 969.5 835 63.0
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 7.5e-279 964.5 857 60.4
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 8.6e-275 951.0 918 57.7
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.5e-266 923.7 913 55.5
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 6.2e-265 918.3 1014 49.9
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 6.8e-264 914.8 1226 47.6
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 6.8e-264 914.8 958 51.6
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 7.8e-260 901.4 939 56.1
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.4e-253 879.8 1017 49.2
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 7.8e-252 874.8 687 65.6
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.7e-251 873.6 690 65.5
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 2.4e-245 853.2 755 63.2
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 1.3e-243 847.4 593 74.4
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.9e-240 835.1 909 50.3
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.4e-231 806.2 951 48.3
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.4e-224 784.3 1176 42.9
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 1.4e-221 774.2 613 66.7
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 6.7e-219 765.4 629 65.7
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.4e-208 731.1 1092 45.2
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.1e-192 676.8 617 60.1
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 6.8e-179 632.5 475 68.2
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 3.7e-177 626.7 581 61.1
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 2.3e-174 617.5 499 66.1
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.8e-163 581.3 416 71.9
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.3e-158 564.3 751 43.9
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 3.9e-142 510.4 739 43.2
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 6.4e-137 493.0 390 67.2
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 8.4e-129 466.1 348 70.4
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 3.6e-124 450.7 401 61.8
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.3e-105 389.0 404 54.7
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.3e-99 367.1 296 66.6
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 4.8e-84 317.4 375 44.5
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.7e-68 265.8 516 35.9
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.5e-66 257.7 222 63.5
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 1.6e-63 249.2 311 48.9
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 1.2e-58 233.0 712 29.6
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 5.9e-58 230.7 232 56.0
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 6.6e-57 227.3 186 66.1
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 4.3e-56 224.6 232 51.7
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.2e-55 223.0 166 65.7
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 6.1e-55 220.7 159 68.6
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 1.3e-52 213.0 162 66.7
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.1e-51 209.9 246 48.0
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.0e-49 203.4 182 57.7
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 1.6e-47 196.1 165 63.6
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 3.1e-46 191.8 701 27.4
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.6e-45 188.7 852 24.8
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 5.8e-45 187.6 739 26.3
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 5.8e-45 187.6 696 27.3
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 1.7e-44 186.0 460 36.3
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.6e-42 179.5 716 25.3
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.6e-42 179.5 147 61.9
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 6.6e-41 174.1 737 25.1
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 5.6e-40 171.0 172 54.1
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 6.2e-39 167.5 241 44.8
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 1.1e-38 166.8 159 57.9
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 8.9e-38 163.7 257 42.0
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 7.5e-37 160.6 130 63.1
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 4.9e-36 157.9 118 65.3
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 2.4e-35 155.6 156 55.1
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 3.0e-33 148.7 840 24.2
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.1e-33 147.9 157 51.0
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.6e-29 135.6 515 28.9
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 1.6e-26 126.3 116 63.8
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.7e-26 125.6 766 24.0
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 8.1e-23 114.0 799 24.0
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.4e-22 113.2 522 23.8
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 5.2e-22 111.3 69 82.6
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 3.4e-21 108.6 139 46.8
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 1.1e-19 103.6 105 47.6
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-19 103.2 350 27.1
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 9.3e-19 100.5 73 67.1
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 4.6e-18 98.2 82 61.0
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.3e-17 96.7 265 28.7
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 5.3e-14 84.7 724 24.4
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.4e-13 82.0 94 46.8
Lsat_1_v5_gn_8_47661 Lactuca sativa HOM05D002705 ORTHO05D004955 2.4e-11 75.9 133 43.6
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.2e-11 75.1 431 24.1
Lsat_1_v5_gn_9_1780 Lactuca sativa HOM05D002705 ORTHO05D004955 5.4e-11 74.7 76 63.2
Lsat_1_v5_gn_5_52420 Lactuca sativa HOM05D002705 ORTHO05D004955 3.0e-09 68.9 80 56.2
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 6.2e-07 61.2 156 34.0
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 2.4e-06 59.3 73 49.3
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 4.0e-06 58.5 132 34.1
Cre07.g312150 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 9.0e-06 57.4 86 38.4


User provided reference genes

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