Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G2351 Erigeron canadensis HOM05D005761 ORTHO05D007286 1.7e-90 335.9 161 100.0
HanXRQChr09g0275451 Helianthus annuus HOM05D005761 ORTHO05D007286 3.9e-82 308.1 161 90.7
Lsat_1_v5_gn_4_103261 Lactuca sativa HOM05D005761 ORTHO05D007286 2.2e-77 292.4 161 85.7
RcHm_v2.0_Chr2g0139151 Rosa chinensis HOM05D005761 ORTHO05D007286 9.2e-68 260.4 157 75.8
Cc04_g07670 Coffea canephora HOM05D005761 ORTHO05D007286 6.0e-67 257.7 161 73.9
Lj9C509G5 Lonicera japonica HOM05D003521 ORTHO05D000476 1.7e-66 256.1 161 72.0
Manes.04G130300 Manihot esculenta HOM05D005761 ORTHO05D007286 1.7e-66 256.1 157 75.2
Gohir.D05G131700 Gossypium hirsutum HOM05D005761 ORTHO05D007286 2.3e-66 255.8 157 73.9
Gorai.009G135400 Gossypium raimondii HOM05D005761 ORTHO05D007286 2.3e-66 255.8 157 73.9
Thecc.06G093100 Theobroma cacao HOM05D005761 ORTHO05D007286 2.3e-66 255.8 157 74.5
Atru.chr5.1334 Acer truncatum HOM05D005761 ORTHO05D007286 3.0e-66 255.4 157 74.5
FvH4_6g31840 Fragaria vesca HOM05D005761 ORTHO05D007286 5.1e-66 254.6 154 75.3
FAN14G3194 Fragaria x ananassa HOM05D005761 ORTHO05D007286 5.1e-66 254.6 154 75.3
COL.COLO4_30441 Corchorus olitorius HOM05D005761 ORTHO05D007286 6.6e-66 254.2 153 75.8
Gohir.A05G132200 Gossypium hirsutum HOM05D005761 ORTHO05D007286 6.6e-66 254.2 157 73.2
CSS0019454 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.9e-65 252.7 161 72.7
CSS0045926 Camellia sinensis var. sinensis HOM05D005761 ORTHO05D007286 1.9e-65 252.7 161 72.7
Atru.chr5.1303 Acer truncatum HOM05D005761 ORTHO05D007286 2.5e-65 252.3 157 73.2
arahy.Tifrunner.gnm1.ann1.QAD112 Arachis hypogaea HOM05D005761 ORTHO05D007286 5.6e-65 251.1 157 72.6
DCAR_023065 Daucus carota HOM05D005761 ORTHO05D007286 5.6e-65 251.1 158 73.4
Lj5A57G74 Lonicera japonica HOM05D005761 ORTHO05D007286 9.6e-65 250.4 161 72.0
Dinv38013 Davidia involucrata HOM05D005761 ORTHO05D007286 1.2e-64 250.0 156 71.8
DCAR_016208 Daucus carota HOM05D005761 ORTHO05D007286 1.6e-64 249.6 163 72.4
Duzib192G1004 Durio zibethinus HOM05D005761 ORTHO05D007286 1.6e-64 249.6 157 72.6
FAN09G1691 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.6e-64 249.6 154 74.0
Prupe.6G357100 Prunus persica HOM05D005761 ORTHO05D007286 1.6e-64 249.6 157 72.0
CAN.G438.30 Capsicum annuum HOM05D005761 ORTHO05D007286 2.1e-64 249.2 161 72.7
Haze_16351 Corylus avellana HOM05D005761 ORTHO05D007286 4.7e-64 248.1 157 72.6
Gohir.A10G081800 Gossypium hirsutum HOM05D005761 ORTHO05D007286 4.7e-64 248.1 161 71.4
arahy.Tifrunner.gnm1.ann1.IDML3X Arachis hypogaea HOM05D005761 ORTHO05D007286 1.4e-63 246.5 157 70.7
FAN05G4602 Fragaria x ananassa HOM05D005761 ORTHO05D007286 1.4e-63 246.5 154 73.4
Sabra01G0154700 Salix brachista HOM05D005761 ORTHO05D007286 1.4e-63 246.5 162 72.2
TWI12G1054 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 1.4e-63 246.5 157 70.7
CsaV3_3G005910 Cucumis sativus L. HOM05D005761 ORTHO05D007286 2.4e-63 245.7 157 72.6
Gorai.011G073900 Gossypium raimondii HOM05D005761 ORTHO05D007286 3.1e-63 245.4 161 70.8
Cfa014791 Carpinus fangiana HOM05D005761 ORTHO05D007286 4.0e-63 245.0 153 72.5
MD17G1190700 Malus domestica HOM05D005761 ORTHO05D007286 4.0e-63 245.0 157 72.6
Oeu000460.1 Olea europaea HOM05D005761 ORTHO05D007286 4.0e-63 245.0 158 69.6
Sc12g0009490 Simmondsia chinensis HOM05D005761 ORTHO05D007286 4.0e-63 245.0 156 72.4
Gohir.D10G069650 Gossypium hirsutum HOM05D005761 ORTHO05D007286 5.2e-63 244.6 161 70.8
Ciclev10022630m.g Citrus clementina HOM05D005761 ORTHO05D007286 9.0e-63 243.8 157 70.1
Eucgr.F03043 Eucalyptus grandis HOM05D005761 ORTHO05D007286 9.0e-63 243.8 158 69.0
Rhsim08G0224400 Rhododendron simsii HOM05D005761 ORTHO05D007286 9.0e-63 243.8 158 70.3
PGSC0003DMG401002548 Solanum tuberosum HOM05D005761 ORTHO05D007286 9.0e-63 243.8 161 71.4
TWI75G0371 Tripterygium wilfordii HOM05D005761 ORTHO05D007286 9.0e-63 243.8 157 70.7
vmacro18882 Vaccinium macrocarpon HOM05D005761 ORTHO05D007286 9.0e-63 243.8 158 70.9
Solyc03g120610.3 Solanum lycopersicum HOM05D005761 ORTHO05D007286 1.2e-62 243.4 161 70.8
Sopen00g008190 Solanum pennellii HOM05D005761 ORTHO05D007286 1.2e-62 243.4 161 70.8
Migut.I00937 Erythranthe guttata HOM05D005761 ORTHO05D007286 2.0e-62 242.7 158 69.6
Potri.003G052000 Populus trichocarpa HOM05D005761 ORTHO05D007286 2.0e-62 242.7 162 70.4
EL10Ac9g22057 Beta vulgaris HOM05D005761 ORTHO05D007286 2.6e-62 242.3 156 73.1
MELO3C016564.2 Cucumis melo HOM05D005761 ORTHO05D007286 2.6e-62 242.3 158 70.9
Cfa002100 Carpinus fangiana HOM05D005761 ORTHO05D001133 1.3e-61 240.0 153 71.2
unitig_37.g12255 Utricularia gibba HOM05D005761 ORTHO05D007286 1.7e-61 239.6 156 70.5
CiPaw.01G235200 Carya illinoinensis HOM05D005761 ORTHO05D007286 2.2e-61 239.2 157 68.8
Glyma.08G204400 Glycine max HOM05D005761 ORTHO05D007286 2.2e-61 239.2 158 69.6
Oeu059462.1 Olea europaea HOM05D005761 ORTHO05D007286 2.2e-61 239.2 180 63.9
MBI01_g30861_MAGBIO Magnolia biondii HOM05D005761 ORTHO05D007286 2.9e-61 238.8 144 75.7
GSVIVG01017058001 Vitis vinifera HOM05D005761 ORTHO05D007286 2.9e-61 238.8 157 66.2
Lj3g0012819 Lotus japonicus HOM05D005761 ORTHO05D007286 3.8e-61 238.4 158 70.9
Sed0000486 Sechium edule HOM05D005761 ORTHO05D007286 4.9e-61 238.0 157 68.2
ClCG09G001920 Citrullus lanatus HOM05D005761 ORTHO05D007286 1.1e-60 236.9 154 68.8
Cpa.g.sc33.106 Carica papaya HOM05D005761 ORTHO05D007286 1.9e-60 236.1 161 67.7
Hma1.2p1_1195F.1_g265890 Hydrangea macrophylla HOM05D005761 ORTHO05D007286 1.9e-60 236.1 158 70.3
Nn2g11672 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.9e-60 236.1 154 69.5
Nitab4.5_0001315g0120 Nicotiana tabacum HOM05D005761 ORTHO05D007286 1.9e-60 236.1 141 75.9
Nitab4.5_0007217g0020 Nicotiana tabacum HOM05D005761 ORTHO05D007286 2.4e-60 235.7 141 75.2
RcHm_v2.0_Chr2g0139101 Rosa chinensis HOM05D005761 ORTHO05D007286 2.4e-60 235.7 157 71.3
QL05p021523 Quercus lobata HOM05D005761 ORTHO05D007286 9.3e-60 233.8 157 67.5
Psat2g181000 Pisum sativum HOM05D005761 ORTHO05D007286 1.2e-59 233.4 160 68.1
PGR102G2101 Punica granatum HOM05D005761 ORTHO05D007286 1.2e-59 233.4 159 66.7
Ah.01g005570 Amaranthus hybridus HOM05D005761 ORTHO05D001133 2.1e-59 232.6 181 63.5
Nitab4.5_0006311g0030 Nicotiana tabacum HOM05D005761 ORTHO05D007286 4.6e-59 231.5 141 75.2
Lalb_Chr25g0280001 Lupinus albus HOM05D005761 ORTHO05D007286 7.8e-59 230.7 154 69.5
Peaxi162Scf00015g00136 Petunia axillaris HOM05D005761 ORTHO05D007286 7.8e-59 230.7 141 74.5
Zm00001eb237310 Zea mays HOM05D005761 ORTHO05D007286 7.8e-59 230.7 150 70.0
Nn3g18106 Nelumbo nucifera HOM05D005761 ORTHO05D007286 1.3e-58 229.9 154 68.2
Medtr5g011180 Medicago truncatula HOM05D005761 ORTHO05D007286 1.7e-58 229.6 160 65.6
MSTRG.22659 Avicennia marina HOM05D005761 ORTHO05D007286 2.3e-58 229.2 156 66.7
Ca_06670_v3 Cicer arietinum L. HOM05D005761 ORTHO05D007286 2.3e-58 229.2 160 66.9
PSO063G2446 Papaver somniferum HOM05D005761 ORTHO05D007286 3.0e-58 228.8 154 66.2
THA.LOC104813554 Tarenaya hassleriana HOM05D005761 ORTHO05D007286 3.0e-58 228.8 161 65.8
ClCG10G006430 Citrullus lanatus HOM05D005761 ORTHO05D007286 5.1e-58 228.0 141 72.3
PSO170G4248 Papaver somniferum HOM05D005761 ORTHO05D007286 5.1e-58 228.0 154 65.6
PGR102G0188 Punica granatum HOM05D005761 ORTHO05D007286 5.1e-58 228.0 159 66.0
SGA_v2.0_scaffold80G25854 Striga asiatica HOM05D005761 ORTHO05D007286 8.7e-58 227.3 161 64.0
Cpa.g.sc37.42 Carica papaya HOM05D005761 ORTHO05D007286 1.1e-57 226.9 163 64.4
Rhsim09G0202300 Rhododendron simsii HOM05D005761 ORTHO05D007286 1.1e-57 226.9 158 69.6
SGA_v2.0_scaffold5G02550 Striga asiatica HOM05D005761 ORTHO05D007286 1.5e-57 226.5 161 64.0
AUR62016504 Chenopodium quinoa HOM05D005761 ORTHO05D007286 7.3e-57 224.2 156 71.2
Phvul.010G148400 Phaseolus vulgaris HOM05D005761 ORTHO05D007286 7.3e-57 224.2 156 66.7
CDE05G3104 Ceratophyllum demersum HOM05D005761 ORTHO05D007286 1.6e-56 223.0 143 69.2
ATR0315G131 Amborella trichopoda HOM05D005761 ORTHO05D007286 2.1e-56 222.6 140 70.7
TAR624G1072 Trochodendron aralioides HOM05D005761 ORTHO05D007286 2.1e-56 222.6 154 66.9
TPR.G19588 Trifolium pratense HOM05D005761 ORTHO05D007286 6.2e-56 221.1 176 59.1
Peaxi162Scf00029g02413 Petunia axillaris HOM05D005761 ORTHO05D007286 1.1e-55 220.3 160 66.2
VMungo0464G1667 Vigna mungo HOM05D005761 ORTHO05D007286 1.1e-55 220.3 156 66.0
Os02g0275100 Oryza sativa ssp. japonica HOM05D005761 ORTHO05D007286 1.8e-55 219.5 141 70.9
Aa31LG5G21060 Aethionema arabicum HOM05D000113 ORTHO05D001108 5.3e-55 218.0 161 63.4
HPP92_024576 Vanilla planifolia HOM05D005761 ORTHO05D007286 9.0e-55 217.2 152 64.5
Carub.0001s1498 Capsella rubella HOM05D005761 ORTHO05D007286 1.2e-51 206.8 161 62.1
BcaC07g38774 Brassica carinata HOM05D005761 ORTHO05D007286 2.7e-51 205.7 146 63.0
Thhalv10008971m.g Eutrema salsugineum HOM05D005761 ORTHO05D007286 1.0e-50 203.8 156 59.6
SalBow2G2609 Salvia bowleyana HOM05D005761 ORTHO05D007286 1.3e-50 203.4 206 51.0
Sp1g13540 Schrenkiella parvula HOM05D005761 ORTHO05D007286 5.1e-50 201.4 141 63.1
AL1G27310 Arabidopsis lyrata HOM05D005761 ORTHO05D007286 1.1e-49 200.3 163 60.1
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 1.9e-49 199.5 142 62.7
CARHR015750 Cardamine hirsuta HOM05D005761 ORTHO05D007286 1.9e-49 199.5 142 64.8
TAR636G0897 Trochodendron aralioides HOM05D005761 ORTHO05D007286 7.4e-49 197.6 132 69.7
AT1G15220 Arabidopsis thaliana HOM05D005761 ORTHO05D007286 3.7e-48 195.3 163 58.9
CANSAT56G0921 Cannabis sativa HOM05D005761 ORTHO05D007286 4.8e-48 194.9 158 58.9
A06p11220 Brassica napus HOM05D005761 ORTHO05D007286 1.1e-47 193.7 141 61.7
C05p13350 Brassica napus HOM05D005761 ORTHO05D007286 1.1e-47 193.7 141 61.7
C08p17060 Brassica napus HOM05D000103 ORTHO05D000049 1.1e-47 193.7 141 61.7
BolC5t30072H Brassica oleracea HOM05D005761 ORTHO05D007286 1.1e-47 193.7 141 61.7
BolC8t49332H Brassica oleracea HOM05D005761 ORTHO05D007286 1.1e-47 193.7 141 61.7
BraA06t24302Z Brassica rapa HOM05D005761 ORTHO05D007286 1.1e-47 193.7 141 61.7
A08p31680 Brassica napus HOM05D005761 ORTHO05D007286 9.0e-47 190.7 141 61.0
BraA08t35090Z Brassica rapa HOM05D005761 ORTHO05D007286 9.0e-47 190.7 141 61.0
Duzib160G0104 Durio zibethinus HOM05D005761 ORTHO05D007286 1.3e-45 186.8 157 58.6
SEGI_40479 Sequoiadendron giganteum HOM05D005761 ORTHO05D007286 1.1e-44 183.7 120 71.7
Actinidia32723 Actinidia chinensis HOM05D005761 ORTHO05D007286 2.3e-42 176.0 128 62.5
SHI11001 Sapria himalayana HOM05D005761 ORTHO05D007286 8.7e-42 174.1 157 52.9
Cfa014792 Carpinus fangiana HOM05D005761 ORTHO05D007286 2.1e-40 169.5 110 65.5
HanXRQChr05g0136521 Helianthus annuus HOM05D005761 ORTHO05D007286 1.1e-39 167.2 93 86.0
Mapoly0033s0089 Marchantia polymorpha HOM05D005761 ORTHO05D007286 7.9e-35 151.0 129 56.6
Glyma.07G019200 Glycine max HOM05D005761 ORTHO05D007286 1.8e-34 149.8 93 76.3
HanXRQChr10g0301331 Helianthus annuus HOM05D005761 ORTHO05D007286 3.0e-34 149.1 86 86.0
Pp3c3_29950 Physcomitrium patens HOM05D005761 ORTHO05D007286 3.9e-34 148.7 139 58.3
BcaC05g25451 Brassica carinata HOM05D005761 ORTHO05D007286 1.4e-31 140.2 104 58.7
CBR_g32010 Chara braunii HOM05D005761 ORTHO05D007286 2.9e-29 132.5 143 49.7
HanXRQChr11g0333491 Helianthus annuus HOM05D005761 ORTHO05D007286 6.1e-27 124.8 126 53.2
Sed0020064 Sechium edule HOM05D005761 ORTHO05D007286 6.7e-26 121.3 98 54.1
HanXRQChr08g0232791 Helianthus annuus HOM05D005761 ORTHO05D007286 4.8e-24 115.2 126 49.2
Sopen03g039470 Solanum pennellii HOM05D005761 ORTHO05D007286 9.1e-23 110.9 78 62.8
Rhsim08G0224100 Rhododendron simsii HOM05D000414 ORTHO05D000276 8.5e-13 77.8 50 74.0
Rhsim08G0203300 Rhododendron simsii HOM05D005761 ORTHO05D007286 7.2e-12 74.7 48 68.8


User provided reference genes

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