Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA232G0592 Erigeron canadensis HOM05D005855 ORTHO05D006406 0.0e+00 1433.3 812 100.0
HanXRQChr16g0511741 Helianthus annuus HOM05D005855 ORTHO05D006406 7.0e-281 970.7 817 72.0
Lsat_1_v5_gn_0_14480 Lactuca sativa HOM05D005855 ORTHO05D006406 4.9e-250 868.2 819 66.8
Dinv17130 Davidia involucrata HOM05D005855 ORTHO05D006406 2.9e-202 709.5 840 56.5
Lj8C197T11 Lonicera japonica HOM05D005855 ORTHO05D006406 2.2e-186 656.8 825 56.1
Rhsim04G0133000 Rhododendron simsii HOM05D005855 ORTHO05D006406 4.7e-184 649.0 819 53.1
Peaxi162Scf00254g00712 Petunia axillaris HOM05D005855 ORTHO05D006406 1.0e-183 647.9 845 52.4
vmacro08871 Vaccinium macrocarpon HOM05D005855 ORTHO05D006406 6.7e-183 645.2 868 48.7
Potri.008G077800 Populus trichocarpa HOM05D005855 ORTHO05D006406 1.5e-182 644.0 825 52.7
TAR633G1091 Trochodendron aralioides HOM05D005855 ORTHO05D006406 9.7e-182 641.3 822 52.2
DCAR_031596 Daucus carota HOM05D005855 ORTHO05D006406 3.1e-180 636.3 815 51.4
PGSC0003DMG400016248 Solanum tuberosum HOM05D005855 ORTHO05D006406 5.3e-180 635.6 838 52.1
Prupe.6G365000 Prunus persica HOM05D005855 ORTHO05D006406 1.3e-178 630.9 803 53.4
Actinidia19643 Actinidia chinensis HOM05D005855 ORTHO05D006406 2.2e-178 630.2 838 51.9
CAN.G321.5 Capsicum annuum HOM05D005855 ORTHO05D006406 3.6e-176 622.9 837 52.7
Sabra08G0057900 Salix brachista HOM05D005855 ORTHO05D006406 3.6e-176 622.9 828 51.7
MD12G1261700 Malus domestica HOM05D005855 ORTHO05D006406 8.0e-176 621.7 818 52.1
FvH4_6g00081 Fragaria vesca HOM05D005855 ORTHO05D006406 1.4e-175 620.9 818 53.9
Sopen11g004450 Solanum pennellii HOM05D005855 ORTHO05D006406 8.8e-175 618.2 817 51.4
FAN14G2818 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.3e-174 616.3 818 53.5
Solyc11g008670.2 Solanum lycopersicum HOM05D005855 ORTHO05D006406 5.7e-174 615.5 817 51.3
Nitab4.5_0003928g0050 Nicotiana tabacum HOM05D005855 ORTHO05D006406 9.7e-174 614.8 868 49.3
QL01p051722 Quercus lobata HOM05D005855 ORTHO05D006406 2.2e-173 613.6 800 52.8
Nitab4.5_0001003g0160 Nicotiana tabacum HOM05D005855 ORTHO05D006406 3.7e-173 612.8 870 47.8
QL01p051691 Quercus lobata HOM05D005855 ORTHO05D006406 3.7e-173 612.8 800 52.8
FAN02G1917 Fragaria x ananassa HOM05D005855 ORTHO05D006406 6.3e-173 612.1 820 53.2
RcHm_v2.0_Chr3g0447421 Rosa chinensis HOM05D005855 ORTHO05D006406 6.3e-173 612.1 822 52.7
CiPaw.08G111900 Carya illinoinensis HOM05D005855 ORTHO05D006406 8.5e-170 601.7 802 52.5
TAR362G1086 Trochodendron aralioides HOM05D005855 ORTHO05D006406 3.2e-169 599.7 822 51.5
Hund21931 Selenicereus undatus HOM05D005855 ORTHO05D006406 4.7e-168 595.9 832 49.6
Ciclev10000302m.g Citrus clementina HOM05D005855 ORTHO05D006406 6.1e-168 595.5 826 50.1
Atru.chr2.218 Acer truncatum HOM05D005855 ORTHO05D006406 1.0e-167 594.7 832 51.6
Aa31LG2G2480 Aethionema arabicum HOM05D005855 ORTHO05D006406 1.8e-167 594.0 804 50.4
Aqoxy2G04154 Aquilegia oxysepala HOM05D005855 ORTHO05D006406 5.2e-167 592.4 833 47.1
Manes.13G000700 Manihot esculenta HOM05D005855 ORTHO05D006406 2.6e-166 590.1 816 50.1
FAN09G4305 Fragaria x ananassa HOM05D005855 ORTHO05D006406 3.4e-166 589.7 841 51.8
PGR031G3878 Punica granatum HOM05D005855 ORTHO05D006406 3.4e-166 589.7 800 51.0
Haze_04608 Corylus avellana HOM05D005855 ORTHO05D006406 2.2e-165 587.0 874 47.4
MSTRG.8191 Avicennia marina HOM05D005855 ORTHO05D006406 2.8e-165 586.6 831 49.9
Cc09_g04110 Coffea canephora HOM05D005855 ORTHO05D006406 2.8e-165 586.6 869 47.1
AUR62000270 Chenopodium quinoa HOM05D005855 ORTHO05D006406 6.3e-165 585.5 840 50.1
Glyma.09G248000 Glycine max HOM05D005855 ORTHO05D006406 4.1e-164 582.8 812 48.0
Ah.04g159310 Amaranthus hybridus HOM05D005855 ORTHO05D006406 1.1e-161 574.7 830 48.9
Thhalv10018127m.g Eutrema salsugineum HOM05D005855 ORTHO05D006406 2.5e-161 573.5 792 50.6
Glyma.18G244800 Glycine max HOM05D005855 ORTHO05D006406 2.5e-161 573.5 826 45.8
CsaV3_2G010280 Cucumis sativus L. HOM05D005855 ORTHO05D006406 4.2e-161 572.8 821 49.7
THA.LOC104822010 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 4.2e-161 572.8 797 45.5
MELO3C008612.2 Cucumis melo HOM05D005855 ORTHO05D006406 1.2e-160 571.2 818 49.6
CANSAT64G2413 Cannabis sativa HOM05D005855 ORTHO05D006406 3.6e-160 569.7 816 49.6
Gorai.002G148000 Gossypium raimondii HOM05D005855 ORTHO05D006406 5.2e-159 565.8 827 49.5
Migut.F01842 Erythranthe guttata HOM05D005855 ORTHO05D006406 6.8e-159 565.5 835 47.9
Gohir.A13G090000 Gossypium hirsutum HOM05D005855 ORTHO05D006406 1.2e-158 564.7 827 49.5
Gohir.A02G107108 Gossypium hirsutum HOM05D005855 ORTHO05D006406 3.4e-158 563.1 826 49.6
Lj1g0024601 Lotus japonicus HOM05D005855 ORTHO05D006406 3.4e-158 563.1 809 46.2
THA.LOC104805689 Tarenaya hassleriana HOM05D005855 ORTHO05D006406 3.4e-158 563.1 795 48.9
Sp5g20320 Schrenkiella parvula HOM05D005855 ORTHO05D006406 7.5e-158 562.0 792 50.3
Sed0023015 Sechium edule HOM05D005855 ORTHO05D006406 8.3e-157 558.5 818 50.9
Duzib177G0112 Durio zibethinus HOM05D005855 ORTHO05D006406 9.2e-156 555.1 824 50.0
MBI07_g11487_MAGBIO Magnolia biondii HOM05D005855 ORTHO05D006406 1.2e-155 554.7 829 48.6
Ca_08015_v3 Cicer arietinum L. HOM05D005855 ORTHO05D006406 1.6e-155 554.3 805 45.0
COL.COLO4_22931 Corchorus olitorius HOM05D005855 ORTHO05D006406 4.5e-155 552.7 822 50.4
MD00G1017400 Malus domestica HOM05D005855 ORTHO05D006406 4.5e-155 552.7 829 49.1
Phvul.008G051800 Phaseolus vulgaris HOM05D005855 ORTHO05D006406 5.9e-155 552.4 834 43.9
Oeu034710.1 Olea europaea HOM05D005855 ORTHO05D006406 1.3e-154 551.2 826 47.9
TPR.G31229 Trifolium pratense HOM05D005855 ORTHO05D006406 1.1e-153 548.1 830 44.8
Sc16g0010640 Simmondsia chinensis HOM05D005855 ORTHO05D006406 9.5e-153 545.0 765 50.5
ClCG11G010010 Citrullus lanatus HOM05D005855 ORTHO05D006406 1.2e-150 538.1 819 48.1
SGA_v2.0_scaffold340G49313 Striga asiatica HOM05D005855 ORTHO05D006406 1.2e-150 538.1 824 47.3
VMungo1383G1707 Vigna mungo HOM05D005855 ORTHO05D006406 2.0e-150 537.3 806 43.5
Gohir.D03G072500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 5.7e-150 535.8 851 46.3
TWI18G0231 Tripterygium wilfordii HOM05D005855 ORTHO05D006406 1.7e-149 534.3 832 45.1
Gohir.D13G093500 Gossypium hirsutum HOM05D005855 ORTHO05D006406 2.9e-149 533.5 826 47.9
arahy.Tifrunner.gnm1.ann1.VEFL47 Arachis hypogaea HOM05D005855 ORTHO05D006406 3.7e-149 533.1 805 47.5
Gorai.003G087300 Gossypium raimondii HOM05D005855 ORTHO05D006406 3.7e-149 533.1 851 46.3
EL10Ac4g10026 Beta vulgaris HOM05D005855 ORTHO05D006406 1.8e-148 530.8 826 48.7
CARHR057120 Cardamine hirsuta HOM05D005855 ORTHO05D006406 5.4e-148 529.3 784 47.4
Lalb_Chr03g0038151 Lupinus albus HOM05D005855 ORTHO05D006406 2.0e-147 527.3 822 42.5
AUR62006618 Chenopodium quinoa HOM05D005855 ORTHO05D006406 1.3e-146 524.6 826 47.3
Eucgr.B01457 Eucalyptus grandis HOM05D005855 ORTHO05D006406 3.0e-146 523.5 687 52.8
SGA_v2.0_scaffold122G33208 Striga asiatica HOM05D005855 ORTHO05D006406 3.9e-146 523.1 832 45.9
Thecc.05G112200 Theobroma cacao HOM05D005855 ORTHO05D006406 8.6e-146 521.9 760 52.0
Potri.002G209795 Populus trichocarpa HOM05D005855 ORTHO05D006406 4.3e-145 519.6 684 52.3
Medtr7g080500 Medicago truncatula HOM05D005855 ORTHO05D006406 5.6e-145 519.2 801 43.9
AT1G65470 Arabidopsis thaliana HOM05D005855 ORTHO05D006406 1.2e-144 518.1 798 46.2
Psat3g103080 Pisum sativum HOM05D005855 ORTHO05D006406 2.3e-143 513.8 849 45.1
AL2G22160 Arabidopsis lyrata HOM05D005855 ORTHO05D006406 4.9e-141 506.1 809 44.6
Actinidia07922 Actinidia chinensis HOM05D005855 ORTHO05D006406 1.9e-140 504.2 703 50.5
Lalb_Chr21g0311491 Lupinus albus HOM05D005855 ORTHO05D006406 1.1e-137 495.0 782 41.8
TWI36G1346 Tripterygium wilfordii HOM05D000941 ORTHO05D006406 1.5e-137 494.6 810 45.3
PSO573G0046 Papaver somniferum HOM05D005855 ORTHO05D006406 1.9e-137 494.2 828 46.7
C06p39070 Brassica napus HOM05D005855 ORTHO05D006406 5.6e-137 492.7 805 46.2
BolC6t38999H Brassica oleracea HOM05D005855 ORTHO05D006406 1.2e-136 491.5 805 46.2
PSO017G4019 Papaver somniferum HOM05D005855 ORTHO05D006406 6.8e-135 485.7 851 45.5
BraA07t30911Z Brassica rapa HOM05D005855 ORTHO05D006406 8.9e-135 485.3 811 46.0
A07p32840 Brassica napus HOM05D005855 ORTHO05D006406 2.0e-134 484.2 811 46.0
Carub.0002s1120 Capsella rubella HOM05D005855 ORTHO05D006406 1.7e-133 481.1 807 44.4
Actinidia31264 Actinidia chinensis HOM05D005855 ORTHO05D006406 7.8e-131 472.2 855 39.3
QL01p051710 Quercus lobata HOM05D005855 ORTHO05D006406 7.6e-126 455.7 521 52.4
unitig_749.g13497 Utricularia gibba HOM05D005855 ORTHO05D006406 3.8e-125 453.4 807 45.6
Oeu001220.3 Olea europaea HOM05D005855 ORTHO05D006406 8.4e-125 452.2 747 47.8
Zm00001eb365740 Zea mays HOM05D005855 ORTHO05D006406 2.4e-124 450.7 872 43.9
Os01g0896300 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 6.6e-122 442.6 848 40.6
Zm00001eb144810 Zea mays HOM05D005855 ORTHO05D006406 3.6e-112 410.2 882 35.3
HPP92_024393 Vanilla planifolia HOM05D005855 ORTHO05D006406 1.3e-109 401.7 813 42.1
ATR0743G043 Amborella trichopoda HOM05D005855 ORTHO05D006406 1.9e-105 387.9 846 41.0
CDE04G3007 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 4.8e-96 356.7 783 40.4
SEGI_12971 Sequoiadendron giganteum HOM05D005855 ORTHO05D006406 2.2e-93 347.8 856 39.1
arahy.Tifrunner.gnm1.ann1.65FHJK Arachis hypogaea HOM05D005855 ORTHO05D006406 7.1e-92 342.8 495 44.2
Zm00001eb304780 Zea mays HOM05D005855 ORTHO05D006406 4.8e-88 330.1 842 34.7
CDE02G2532 Ceratophyllum demersum HOM05D005855 ORTHO05D006406 1.1e-76 292.4 600 43.2
Cpa.g.sc88.1 Carica papaya HOM05D005855 ORTHO05D006406 2.6e-65 254.6 565 34.7
GSVIVG01007185001 Vitis vinifera HOM05D005855 ORTHO05D006406 7.4e-65 253.1 251 55.4
Os07g0273301 Oryza sativa ssp. japonica HOM05D005855 ORTHO05D006406 2.9e-61 241.1 463 35.9
arahy.Tifrunner.gnm1.ann1.8C47BX Arachis hypogaea HOM05D005855 ORTHO05D006406 6.7e-58 229.9 503 34.8
arahy.Tifrunner.gnm1.ann1.F2WWIZ Arachis hypogaea HOM05D005855 ORTHO05D006406 1.1e-55 222.6 502 35.3
AagrBONN_evm.TU.Sc2ySwM_344.4907 Anthoceros agrestis HOM05D005855 ORTHO05D006406 1.7e-53 215.3 805 29.2
Dinv29076 Davidia involucrata HOM05D005855 ORTHO05D006406 2.7e-51 208.0 830 26.6
Mapoly0189s0010 Marchantia polymorpha HOM05D005855 ORTHO05D006406 7.7e-46 189.9 715 32.0
SMO356G0323 Selaginella moellendorffii HOM05D005855 ORTHO05D006406 6.5e-45 186.8 466 33.9
Pp3c3_24970 Physcomitrium patens HOM05D005855 ORTHO05D006406 2.5e-44 184.9 381 36.0
GSVIVG01007186001 Vitis vinifera HOM05D005855 ORTHO05D006406 3.6e-35 154.5 120 64.2
Cpa.g.c37190 Carica papaya HOM05D005855 ORTHO05D006406 2.3e-34 151.8 174 48.9
arahy.Tifrunner.gnm1.ann1.X0XBNQ Arachis hypogaea HOM05D005855 ORTHO05D006406 3.7e-32 144.4 180 49.4
VMungo1383G0582 Vigna mungo HOM05D005855 ORTHO05D000818 7.3e-28 130.2 227 37.0
Zm00001eb310680 Zea mays HOM05D000012 ORTHO05D006406 1.7e-24 119.0 144 47.2
CBR_g39948 Chara braunii HOM05D005855 ORTHO05D006406 3.0e-21 108.2 237 36.3
TPR.G32502 Trifolium pratense HOM05D005855 ORTHO05D006406 5.2e-18 97.4 148 39.2
Zm00001eb381860 Zea mays HOM05D000012 ORTHO05D006406 2.2e-16 92.0 106 47.2
Zm00001eb367440 Zea mays HOM05D005855 ORTHO05D006406 1.3e-13 82.8 108 47.2
Cre12.g550152 Chlamydomonas reinhardtii HOM05D005855 ORTHO05D006406 5.8e-09 67.4 172 32.0
Nn8g40536 Nelumbo nucifera HOM05D005855 ORTHO05D006406 1.7e-08 65.9 59 57.6
Ah.06g195260 Amaranthus hybridus HOM05D005855 ORTHO05D006406 4.9e-08 64.3 130 39.2
Lj9A5T14 Lonicera japonica HOM05D016202 ORTHO05D006406 5.4e-07 60.8 156 33.3
Lju1609C0G6 Lonicera japonica HOM05D016202 ORTHO05D006406 7.1e-07 60.5 63 54.0
MSTRG.340 Avicennia marina HOM05D005855 ORTHO05D006406 1.6e-06 59.3 98 40.8
Lju1034A2T22 Lonicera japonica HOM05D016202 ORTHO05D006406 3.5e-06 58.2 64 51.6


User provided reference genes

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