Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ECA082G0001 Erigeron canadensis HOM05D004111 ORTHO05D005252 6.0e-138 494.2 254 100.0
ECA240G0409 Erigeron canadensis HOM05D004111 ORTHO05D005252 7.2e-83 311.2 451 48.6
Lsat_1_v5_gn_7_37140 Lactuca sativa HOM05D004111 ORTHO05D005252 2.0e-56 223.4 453 40.6
HanXRQChr09g0238121 Helianthus annuus HOM05D004111 ORTHO05D005252 1.2e-50 204.1 266 47.7
ECA234G4608 Erigeron canadensis HOM05D004111 ORTHO05D005252 4.1e-46 189.1 244 48.0
HanXRQChr10g0319311 Helianthus annuus HOM05D004111 ORTHO05D005252 3.5e-45 186.0 247 48.2
HanXRQChr03g0060801 Helianthus annuus HOM05D004111 ORTHO05D005252 1.5e-43 180.6 453 33.6
PGSC0003DMG400021391 Solanum tuberosum HOM05D004111 ORTHO05D005252 8.1e-42 174.9 245 45.7
Sopen05g016370 Solanum pennellii HOM05D004111 ORTHO05D005252 2.3e-41 173.3 244 45.5
DCAR_011972 Daucus carota HOM05D004111 ORTHO05D005252 4.0e-41 172.6 251 44.2
Solyc05g018880.1 Solanum lycopersicum HOM05D004111 ORTHO05D005252 8.9e-41 171.4 244 45.1
Rhsim03G0232300 Rhododendron simsii HOM05D004111 ORTHO05D005252 3.4e-40 169.5 256 43.0
Nitab4.5_0000095g0080 Nicotiana tabacum HOM05D004111 ORTHO05D005252 1.3e-39 167.5 246 42.3
TWI63G1616 Tripterygium wilfordii HOM05D004111 ORTHO05D005252 2.2e-39 166.8 261 42.1
Nitab4.5_0003310g0050 Nicotiana tabacum HOM05D004111 ORTHO05D005252 2.9e-39 166.4 246 42.3
Cc06_g11400 Coffea canephora HOM05D004111 ORTHO05D005252 3.7e-39 166.0 251 43.4
VMungo1215G1868 Vigna mungo HOM05D004111 ORTHO05D005252 3.7e-39 166.0 245 43.7
ECA240G4632 Erigeron canadensis HOM05D000006 ORTHO05D000091 8.3e-39 164.9 267 44.6
vmacro06291 Vaccinium macrocarpon HOM05D004111 ORTHO05D005252 1.1e-38 164.5 259 41.7
arahy.Tifrunner.gnm1.ann1.0E9UWZ Arachis hypogaea HOM05D004111 ORTHO05D005252 1.9e-38 163.7 256 42.6
GSVIVG01015201001 Vitis vinifera HOM05D004111 ORTHO05D005252 3.2e-38 162.9 214 47.7
Phvul.003G136900 Phaseolus vulgaris HOM05D004111 ORTHO05D005252 4.1e-38 162.5 243 44.0
Cfa003086 Carpinus fangiana HOM05D004111 ORTHO05D005252 7.1e-38 161.8 258 41.1
Peaxi162Scf01461g00001 Petunia axillaris HOM05D004111 ORTHO05D005252 7.1e-38 161.8 252 40.9
Manes.03G033700 Manihot esculenta HOM05D004111 ORTHO05D005252 1.2e-37 161.0 263 43.0
Glyma.17G055000 Glycine max HOM05D004111 ORTHO05D005252 1.6e-37 160.6 240 44.6
TWI34G1056 Tripterygium wilfordii HOM05D004111 ORTHO05D005252 2.1e-37 160.2 257 41.2
Haze_25913 Corylus avellana HOM05D004111 ORTHO05D005252 2.7e-37 159.8 261 41.0
Aqoxy7G01214 Aquilegia oxysepala HOM05D004111 ORTHO05D005252 3.5e-37 159.5 359 35.4
vmacro17231 Vaccinium macrocarpon HOM05D004111 ORTHO05D005252 3.5e-37 159.5 259 41.7
Oeu042656.1 Olea europaea HOM05D004111 ORTHO05D005252 4.6e-37 159.1 264 42.0
Sopen07g018460 Solanum pennellii HOM05D004111 ORTHO05D005252 6.0e-37 158.7 237 40.5
CAN.G25.8 Capsicum annuum HOM05D004111 ORTHO05D005252 7.8e-37 158.3 261 40.2
MD02G1079400 Malus domestica HOM05D004111 ORTHO05D005252 7.8e-37 158.3 266 40.2
Actinidia29901 Actinidia chinensis HOM05D004111 ORTHO05D005252 1.0e-36 157.9 254 41.7
arahy.Tifrunner.gnm1.ann1.0IF9U9 Arachis hypogaea HOM05D004111 ORTHO05D005252 1.0e-36 157.9 271 40.2
Gohir.A05G029900 Gossypium hirsutum HOM05D004111 ORTHO05D005252 1.7e-36 157.1 264 41.7
Gohir.D05G031300 Gossypium hirsutum HOM05D004111 ORTHO05D005252 1.7e-36 157.1 264 41.7
Gorai.009G031500 Gossypium raimondii HOM05D004111 ORTHO05D005252 1.7e-36 157.1 264 41.7
Prupe.7G209800 Prunus persica HOM05D004111 ORTHO05D005252 1.7e-36 157.1 268 40.3
QL01p049089 Quercus lobata HOM05D004111 ORTHO05D005252 1.7e-36 157.1 266 39.5
QL02p062674 Quercus lobata HOM05D004111 ORTHO05D005252 1.7e-36 157.1 266 39.5
COL.COLO4_18200 Corchorus olitorius HOM05D004111 ORTHO05D005252 2.3e-36 156.8 362 35.9
CiPaw.03G216100 Carya illinoinensis HOM05D004111 ORTHO05D005252 3.0e-36 156.4 258 39.5
Solyc07g039310.1 Solanum lycopersicum HOM05D004111 ORTHO05D005252 3.0e-36 156.4 234 40.6
Manes.16G102100 Manihot esculenta HOM05D004111 ORTHO05D005252 3.9e-36 156.0 263 40.7
Nn8g38866 Nelumbo nucifera HOM05D004111 ORTHO05D005252 8.6e-36 154.8 262 40.5
Cpa.g.sc61.52 Carica papaya HOM05D004111 ORTHO05D005252 1.1e-35 154.5 314 37.9
Phvul.009G232400 Phaseolus vulgaris HOM05D004111 ORTHO05D005252 1.5e-35 154.1 259 40.9
Sabra06G0119800 Salix brachista HOM05D004111 ORTHO05D005252 2.5e-35 153.3 262 39.3
Potri.006G151300 Populus trichocarpa HOM05D004111 ORTHO05D005252 3.3e-35 152.9 262 39.3
Lalb_Chr11g0074611 Lupinus albus HOM05D004111 ORTHO05D005252 4.3e-35 152.5 263 39.9
Lalb_Chr08g0232141 Lupinus albus HOM05D004111 ORTHO05D005252 5.6e-35 152.1 250 40.8
Duzib150G0164 Durio zibethinus HOM05D004111 ORTHO05D005252 7.3e-35 151.8 263 39.9
Lalb_Chr13g0299721 Lupinus albus HOM05D004111 ORTHO05D005252 7.3e-35 151.8 267 38.2
VMungo1309G0774 Vigna mungo HOM05D004111 ORTHO05D005252 7.3e-35 151.8 260 40.0
Duzib168G1590 Durio zibethinus HOM05D004111 ORTHO05D005252 9.5e-35 151.4 263 40.3
Gohir.A07G011100 Gossypium hirsutum HOM05D004111 ORTHO05D005252 9.5e-35 151.4 155 55.5
Gohir.D07G011175 Gossypium hirsutum HOM05D004111 ORTHO05D005252 9.5e-35 151.4 155 55.5
Thecc.09G089400 Theobroma cacao HOM05D004111 ORTHO05D005252 9.5e-35 151.4 263 39.9
Nn6g35478 Nelumbo nucifera HOM05D004111 ORTHO05D005252 2.1e-34 150.2 265 37.0
Nitab4.5_0016456g0010 Nicotiana tabacum HOM05D004111 ORTHO05D005252 2.1e-34 150.2 249 40.6
MSTRG.10564 Avicennia marina HOM05D004111 ORTHO05D005252 2.8e-34 149.8 254 39.4
Gorai.001G011800 Gossypium raimondii HOM05D004111 ORTHO05D005252 2.8e-34 149.8 155 54.8
Oeu006970.1 Olea europaea HOM05D004111 ORTHO05D005252 2.8e-34 149.8 258 40.3
FAN10G0602 Fragaria x ananassa HOM05D004111 ORTHO05D005252 3.6e-34 149.4 246 40.7
Glyma.15G169600 Glycine max HOM05D004111 ORTHO05D005252 3.6e-34 149.4 266 39.8
ClCG11G001760 Citrullus lanatus HOM05D004111 ORTHO05D005252 4.7e-34 149.1 244 41.0
Eucgr.C00897 Eucalyptus grandis HOM05D004111 ORTHO05D005252 4.7e-34 149.1 267 39.7
FvH4_7g01430 Fragaria vesca HOM05D004111 ORTHO05D005252 6.2e-34 148.7 246 40.2
FAN06G2956 Fragaria x ananassa HOM05D004111 ORTHO05D005252 6.2e-34 148.7 246 40.2
SalBow6G6598 Salvia bowleyana HOM05D004111 ORTHO05D005252 6.2e-34 148.7 239 41.4
Atru.chr7.1589 Acer truncatum HOM05D004111 ORTHO05D005252 8.1e-34 148.3 258 38.4
Nitab4.5_0004978g0010 Nicotiana tabacum HOM05D004111 ORTHO05D005252 8.1e-34 148.3 249 40.6
TAR624G1353 Trochodendron aralioides HOM05D004111 ORTHO05D005252 1.1e-33 147.9 261 37.9
Migut.L01492 Erythranthe guttata HOM05D004111 ORTHO05D005252 1.4e-33 147.5 166 48.8
Glyma.13G104100 Glycine max HOM05D004111 ORTHO05D005252 1.4e-33 147.5 244 42.2
Lj6g0009922 Lotus japonicus HOM05D004111 ORTHO05D005252 1.4e-33 147.5 263 38.0
RcHm_v2.0_Chr2g0093331 Rosa chinensis HOM05D004111 ORTHO05D005252 1.8e-33 147.1 259 38.2
MD15G1206900 Malus domestica HOM05D004111 ORTHO05D005252 4.0e-33 146.0 267 38.6
Psat1g141360 Pisum sativum HOM05D004111 ORTHO05D005252 4.0e-33 146.0 260 38.1
TAR383G0321 Trochodendron aralioides HOM05D004111 ORTHO05D005252 4.0e-33 146.0 261 38.7
FAN01G2766 Fragaria x ananassa HOM05D004111 ORTHO05D005252 5.2e-33 145.6 246 40.2
FAN03G1185 Fragaria x ananassa HOM05D004111 ORTHO05D005252 5.2e-33 145.6 246 40.2
Sed0015676 Sechium edule HOM05D004111 ORTHO05D005252 6.8e-33 145.2 241 40.7
Glyma.09G063000 Glycine max HOM05D004111 ORTHO05D005252 8.9e-33 144.8 268 38.8
Dinv42319 Davidia involucrata HOM05D004111 ORTHO05D005252 1.2e-32 144.4 401 32.4
Hma1.2p1_2664F.1_g326440 Hydrangea macrophylla HOM05D004111 ORTHO05D005252 1.5e-32 144.1 270 38.1
MELO3C004624.2 Cucumis melo HOM05D004111 ORTHO05D005252 2.0e-32 143.7 244 40.2
Sc08g0008470 Simmondsia chinensis HOM05D004111 ORTHO05D005252 2.0e-32 143.7 244 40.2
vmacro17232 Vaccinium macrocarpon HOM05D004111 ORTHO05D005252 2.0e-32 143.7 259 39.8
PGSC0003DMG400017833 Solanum tuberosum HOM05D004111 ORTHO05D005252 2.6e-32 143.3 242 37.2
CANSAT25G0955 Cannabis sativa HOM05D004111 ORTHO05D005252 5.8e-32 142.1 267 37.1
Ciclev10007864m.g Citrus clementina HOM05D004111 ORTHO05D005252 5.8e-32 142.1 260 37.7
CsaV3_2G001470 Cucumis sativus L. HOM05D004111 ORTHO05D005252 5.8e-32 142.1 244 39.3
PSO210G1393 Papaver somniferum HOM05D004111 ORTHO05D005252 5.8e-32 142.1 248 39.1
Ah.06g192090 Amaranthus hybridus HOM05D004111 ORTHO05D005252 9.9e-32 141.4 257 38.5
Medtr2g039160 Medicago truncatula HOM05D004111 ORTHO05D005252 1.7e-31 140.6 263 39.5
TPR.G27541 Trifolium pratense HOM05D004111 ORTHO05D005252 1.7e-31 140.6 264 39.8
CANSAT56G0788 Cannabis sativa HOM05D004111 ORTHO05D005252 2.9e-31 139.8 267 36.3
TAR636G0804 Trochodendron aralioides HOM05D004111 ORTHO05D005252 2.9e-31 139.8 259 37.8
PGR142G4166 Punica granatum HOM05D004111 ORTHO05D005252 4.9e-31 139.0 261 37.9
EL10Ac8g19219 Beta vulgaris HOM05D004111 ORTHO05D005252 8.4e-31 138.3 258 36.8
MBI01_g16602_MAGBIO Magnolia biondii HOM05D004111 ORTHO05D005252 1.1e-30 137.9 259 37.5
PSO210G4135 Papaver somniferum HOM05D004111 ORTHO05D005252 1.9e-30 137.1 257 37.0
Sp7g27490 Schrenkiella parvula HOM05D004111 ORTHO05D005252 2.4e-30 136.7 188 43.6
SGA_v2.0_scaffold21G09380 Striga asiatica HOM05D004111 ORTHO05D005252 5.4e-30 135.6 258 35.7
Dinv36766 Davidia involucrata HOM05D004111 ORTHO05D005252 1.2e-29 134.4 221 41.6
Lalb_Chr12g0199781 Lupinus albus HOM05D004111 ORTHO05D005252 1.6e-29 134.0 233 39.9
AUR62033975 Chenopodium quinoa HOM05D004111 ORTHO05D005252 7.8e-29 131.7 256 35.9
Migut.J00618 Erythranthe guttata HOM05D004111 ORTHO05D005252 1.0e-28 131.3 252 35.7
MD16G1255500 Malus domestica HOM05D004111 ORTHO05D005252 1.3e-28 131.0 152 51.3
AUR62027508 Chenopodium quinoa HOM05D004111 ORTHO05D005252 3.9e-28 129.4 256 35.5
BcaNung00484 Brassica carinata HOM05D004111 ORTHO05D005252 8.6e-28 128.3 165 44.8
MD01G1012400 Malus domestica HOM05D004111 ORTHO05D005252 1.9e-27 127.1 152 49.3
Thhalv10024841m.g Eutrema salsugineum HOM05D004111 ORTHO05D005252 3.3e-27 126.3 184 43.5
Peaxi162Scf00498g00033 Petunia axillaris HOM05D004111 ORTHO05D005252 4.3e-27 125.9 247 32.8
A03p59020 Brassica napus HOM05D004111 ORTHO05D005252 5.6e-27 125.6 169 44.4
Nitab4.5_0008523g0010 Nicotiana tabacum HOM05D004111 ORTHO05D005252 5.6e-27 125.6 253 34.0
BcaC09g51749 Brassica carinata HOM05D004111 ORTHO05D005252 7.3e-27 125.2 182 42.3
Carub.0007s1080 Capsella rubella HOM05D004111 ORTHO05D005252 7.3e-27 125.2 182 42.3
AL7G22590 Arabidopsis lyrata HOM05D004111 ORTHO05D005252 1.2e-26 124.4 184 42.9
CARHR237570 Cardamine hirsuta HOM05D004111 ORTHO05D005252 1.2e-26 124.4 182 42.9
A01p08410 Brassica napus HOM05D004111 ORTHO05D005252 1.6e-26 124.0 189 40.7
BraA01t00789Z Brassica rapa HOM05D004111 ORTHO05D005252 1.6e-26 124.0 189 40.7
THA.LOC104814620 Tarenaya hassleriana HOM05D004111 ORTHO05D005252 2.1e-26 123.6 179 44.1
AT4G29720 Arabidopsis thaliana HOM05D004111 ORTHO05D005252 2.8e-26 123.2 185 42.2
BraA03t14962Z Brassica rapa HOM05D004111 ORTHO05D005252 2.8e-26 123.2 169 43.8
BolC1t00935H Brassica oleracea HOM05D004111 ORTHO05D005252 8.1e-26 121.7 181 42.0
PGSC0003DMG400044110 Solanum tuberosum HOM05D004111 ORTHO05D005252 1.1e-25 121.3 252 34.5
MSTRG.6061 Avicennia marina HOM05D004111 ORTHO05D005252 1.4e-25 120.9 253 36.0
THA.LOC104803973 Tarenaya hassleriana HOM05D004111 ORTHO05D005252 2.0e-24 117.1 179 41.9
Aa31LG2G20850 Aethionema arabicum HOM05D004111 ORTHO05D005252 9.9e-24 114.8 169 39.6
SEGI_19847 Sequoiadendron giganteum HOM05D004111 ORTHO05D005252 9.9e-24 114.8 179 39.1
BcaC09g52222 Brassica carinata HOM05D004111 ORTHO05D005252 1.7e-23 114.0 188 39.9
C01p09740 Brassica napus HOM05D004111 ORTHO05D005252 1.7e-23 114.0 188 39.9
CAN.G1785.2 Capsicum annuum HOM05D004111 ORTHO05D005252 1.9e-22 110.5 219 34.7
C07p57070 Brassica napus HOM05D004111 ORTHO05D005252 1.2e-21 107.8 204 38.2
BolC7t46178H Brassica oleracea HOM05D004111 ORTHO05D005252 1.2e-21 107.8 204 38.2
DCAR_010678 Daucus carota HOM05D004111 ORTHO05D005252 2.7e-21 106.7 212 35.8
Lalb_Chr07g0180841 Lupinus albus HOM05D004111 ORTHO05D005252 4.6e-21 105.9 93 61.3
SabraUnG0005600 Salix brachista HOM05D004111 ORTHO05D005252 4.6e-21 105.9 85 67.1
SGA_v2.0_scaffold62G21608 Striga asiatica HOM05D004111 ORTHO05D005252 7.8e-21 105.1 172 38.4
CDE02G3235 Ceratophyllum demersum HOM05D004111 ORTHO05D005252 1.0e-20 104.8 179 40.8
ATR0749G083 Amborella trichopoda HOM05D004111 ORTHO05D005252 1.9e-19 100.5 168 39.3
vmacro17230 Vaccinium macrocarpon HOM05D004111 ORTHO05D005252 4.8e-18 95.9 144 45.1
CiPaw.04G149300 Carya illinoinensis HOM05D004111 ORTHO05D005252 1.5e-16 90.9 216 30.6
Solyc12g008850.3 Solanum lycopersicum HOM05D004111 ORTHO05D005252 4.5e-16 89.4 68 66.2
Sopen12g003780 Solanum pennellii HOM05D004111 ORTHO05D005252 4.5e-16 89.4 68 66.2
PGSC0003DMG400000338 Solanum tuberosum HOM05D004111 ORTHO05D005252 7.6e-16 88.6 68 64.7
Os01g0710200 Oryza sativa ssp. japonica HOM05D004111 ORTHO05D005252 2.2e-15 87.0 152 36.8
CAN.G1241.23 Capsicum annuum HOM05D004111 ORTHO05D005252 2.9e-15 86.7 68 64.7
CAN.G4193.1 Capsicum annuum HOM05D004111 ORTHO05D005252 2.9e-15 86.7 68 64.7
HPP92_024007 Vanilla planifolia HOM05D004111 ORTHO05D005252 1.3e-12 77.8 129 41.1
Zm00001eb155140 Zea mays HOM05D004111 ORTHO05D005252 8.7e-12 75.1 147 34.0
SMO271G0058 Selaginella moellendorffii HOM05D004111 ORTHO05D005252 5.6e-11 72.4 173 29.5
SalBow1G8305 Salvia bowleyana HOM05D004111 ORTHO05D005252 2.8e-10 70.1 88 46.6
HPP92_003972 Vanilla planifolia HOM05D004111 ORTHO05D005252 8.1e-10 68.6 111 39.6
SEGI_30114 Sequoiadendron giganteum HOM05D004111 ORTHO05D005252 1.5e-08 64.3 72 44.4
Mapoly0103s0017 Marchantia polymorpha HOM05D004111 ORTHO05D005252 5.8e-08 62.4 170 28.8
BcaB07g33964 Brassica carinata HOM05D000109 ORTHO05D000520 7.1e-06 55.5 148 33.1


User provided reference genes

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