Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib192G0985 Durio zibethinus HOM05D005126 ORTHO05D006169 0.0e+00 2280.0 1232 100.0
Duzib160G0882 Durio zibethinus HOM05D005126 ORTHO05D006169 0.0e+00 1754.6 1219 80.8
COL.COLO4_33008 Corchorus olitorius HOM05D005126 ORTHO05D006169 0.0e+00 1497.3 1203 71.7
Thecc.06G207200 Theobroma cacao HOM05D005126 ORTHO05D006169 0.0e+00 1443.7 966 82.4
Gohir.A10G017400 Gossypium hirsutum HOM05D005126 ORTHO05D006169 0.0e+00 1426.0 1233 68.0
Gohir.D06G212500 Gossypium hirsutum HOM05D005126 ORTHO05D006169 0.0e+00 1404.0 1225 68.4
Gorai.010G253600 Gossypium raimondii HOM05D005126 ORTHO05D006169 0.0e+00 1403.3 1225 68.3
Gohir.A06G208600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 0.0e+00 1350.9 1227 66.6
Ciclev10007263m.g Citrus clementina HOM05D005126 ORTHO05D006169 0.0e+00 1125.9 1238 57.6
Dinv17855 Davidia involucrata HOM05D005126 ORTHO05D006169 0.0e+00 1107.8 1249 56.2
Haze_06662 Corylus avellana HOM05D005126 ORTHO05D006169 0.0e+00 1102.8 1246 55.5
CiPaw.09G152800 Carya illinoinensis HOM05D005126 ORTHO05D006169 0.0e+00 1100.5 1255 55.5
Cfa000280 Carpinus fangiana HOM05D005126 ORTHO05D006169 0.0e+00 1087.8 1247 55.3
Potri.004G030500 Populus trichocarpa HOM05D005126 ORTHO05D006169 0.0e+00 1079.3 1274 53.1
Prupe.4G030200 Prunus persica HOM05D005126 ORTHO05D006169 7.0e-309 1064.3 1249 55.9
Gorai.011G019500 Gossypium raimondii HOM05D005126 ORTHO05D006169 4.6e-308 1061.6 1173 57.2
Gohir.D10G017600 Gossypium hirsutum HOM05D005126 ORTHO05D006169 7.8e-308 1060.8 1173 57.2
QL05p077365 Quercus lobata HOM05D005126 ORTHO05D006169 2.3e-307 1059.3 1247 54.7
TWI63G0986 Tripterygium wilfordii HOM05D005126 ORTHO05D006169 2.2e-302 1042.7 1250 54.1
TAR624G1039 Trochodendron aralioides HOM05D005126 ORTHO05D006169 3.7e-302 1042.0 1281 52.1
Potri.011G032200 Populus trichocarpa HOM05D005126 ORTHO05D006169 6.2e-297 1024.6 1263 52.2
Sabra11G0025300 Salix brachista HOM05D005126 ORTHO05D006169 3.1e-296 1022.3 1269 51.4
Sabra11G0019400 Salix brachista HOM05D005126 ORTHO05D006169 1.7e-291 1006.5 1263 51.2
RcHm_v2.0_Chr5g0004701 Rosa chinensis HOM05D005126 ORTHO05D006169 6.2e-281 971.5 1238 53.0
FvH4_3g03041 Fragaria vesca HOM05D005126 ORTHO05D006169 1.0e-275 954.1 1232 52.2
FAN21G2838 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.8e-273 946.0 1232 52.0
Lj4g0001880 Lotus japonicus HOM05D005126 ORTHO05D006169 5.8e-271 938.3 1239 51.0
Manes.15G164500 Manihot esculenta HOM05D005126 ORTHO05D006169 1.2e-268 930.6 1260 48.3
MD10G1310700 Malus domestica HOM05D005126 ORTHO05D006169 2.7e-268 929.5 1250 50.8
VMungo0251G0970 Vigna mungo HOM05D005126 ORTHO05D006169 1.4e-261 907.1 1237 50.0
Nn1g03751 Nelumbo nucifera HOM05D005126 ORTHO05D006169 1.0e-259 901.0 1260 49.4
CANSAT35G0768 Cannabis sativa HOM05D005126 ORTHO05D006169 6.3e-257 891.7 1277 47.9
Glyma.07G187500 Glycine max HOM05D005126 ORTHO05D006169 4.5e-255 885.6 1244 49.4
Phvul.002G219000 Phaseolus vulgaris HOM05D005126 ORTHO05D006169 8.5e-254 881.3 1256 48.0
arahy.Tifrunner.gnm1.ann1.7M140W Arachis hypogaea HOM05D005126 ORTHO05D006169 1.1e-250 870.9 1258 48.6
arahy.Tifrunner.gnm1.ann1.JX13SW Arachis hypogaea HOM05D005126 ORTHO05D006169 2.0e-247 860.1 1248 48.4
Ca_18455_v3 Cicer arietinum L. HOM05D005126 ORTHO05D006169 2.7e-244 849.7 1242 47.7
TPR.G13921 Trifolium pratense HOM05D005126 ORTHO05D006169 2.7e-244 849.7 1249 47.5
Glyma.08G061700 Glycine max HOM05D005126 ORTHO05D006169 7.9e-244 848.2 1246 48.6
Lalb_Chr09g0327171 Lupinus albus HOM05D005126 ORTHO05D006169 1.1e-237 827.8 1240 46.8
Medtr4g092040 Medicago truncatula HOM05D005126 ORTHO05D006169 3.0e-235 819.7 1233 47.9
Thhalv10023224m.g Eutrema salsugineum HOM05D005126 ORTHO05D006169 4.8e-233 812.4 1243 46.5
MD05G1335200 Malus domestica HOM05D005126 ORTHO05D006169 4.5e-231 805.8 1054 51.2
THA.LOC104809525 Tarenaya hassleriana HOM05D005126 ORTHO05D006169 7.7e-231 805.1 1218 46.9
MELO3C007347.2 Cucumis melo HOM05D005126 ORTHO05D006169 9.4e-229 798.1 1265 47.1
Sp2g02860 Schrenkiella parvula HOM05D005126 ORTHO05D006169 2.7e-228 796.6 1239 46.0
AL2G14430 Arabidopsis lyrata HOM05D005126 ORTHO05D006169 8.8e-227 791.6 1245 45.9
Sed0023382 Sechium edule HOM05D005126 ORTHO05D006169 8.8e-227 791.6 1263 46.6
CsaV3_6G049470 Cucumis sativus L. HOM05D005126 ORTHO05D006169 1.5e-226 790.8 1264 46.2
Psat7g105840 Pisum sativum HOM05D005126 ORTHO05D006169 2.6e-226 790.0 1235 46.5
CARHR050640 Cardamine hirsuta HOM05D005126 ORTHO05D006169 1.7e-225 787.3 1236 46.4
ClCG01G022310 Citrullus lanatus HOM05D005126 ORTHO05D006169 4.8e-225 785.8 1263 45.9
Carub.0002s0337 Capsella rubella HOM05D005126 ORTHO05D006169 7.0e-224 781.9 1235 45.8
CSS0033857 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 1.5e-218 764.2 1233 45.7
MBI07_g11719_MAGBIO Magnolia biondii HOM05D005126 ORTHO05D006169 2.8e-212 743.4 1234 44.5
BcaB04g20363 Brassica carinata HOM05D005126 ORTHO05D006169 1.2e-210 738.0 1232 44.9
A01p30560 Brassica napus HOM05D005126 ORTHO05D006169 1.7e-209 734.2 1236 44.7
BraA01t03188Z Brassica rapa HOM05D005126 ORTHO05D006169 3.7e-209 733.0 1236 44.7
BolC1t03845H Brassica oleracea HOM05D005126 ORTHO05D006169 1.8e-208 730.7 1243 44.7
C01p38950 Brassica napus HOM05D005126 ORTHO05D006169 2.4e-208 730.3 1243 44.6
AT1G61690 Arabidopsis thaliana HOM05D005126 ORTHO05D006169 1.7e-206 724.2 1237 43.7
Aa31LG2G9130 Aethionema arabicum HOM05D005126 ORTHO05D006169 3.9e-206 723.0 1236 43.3
Actinidia05547 Actinidia chinensis HOM05D005126 ORTHO05D006169 1.5e-197 694.5 1235 42.9
GSVIVG01006404001 Vitis vinifera HOM05D005126 ORTHO05D006169 1.5e-194 684.5 1040 46.9
vmacro03741 Vaccinium macrocarpon HOM05D005126 ORTHO05D006169 6.4e-193 679.1 1232 42.0
CAN.G424.91 Capsicum annuum HOM05D005126 ORTHO05D006169 2.4e-192 677.2 1264 41.6
PSO210G4646 Papaver somniferum HOM05D005126 ORTHO05D006169 9.2e-192 675.2 1233 41.8
Rhsim13G0163000 Rhododendron simsii HOM05D005126 ORTHO05D006169 3.9e-190 669.8 1243 41.1
Aqoxy4G01910 Aquilegia oxysepala HOM05D005126 ORTHO05D006169 1.5e-189 667.9 1248 40.7
PSO832G1831 Papaver somniferum HOM05D005126 ORTHO05D006169 1.2e-188 664.8 1232 40.8
CSS0041207 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 1.6e-188 664.5 1231 41.5
FAN25G1045 Fragaria x ananassa HOM05D005126 ORTHO05D006169 8.9e-187 658.7 785 55.9
Nitab4.5_0000503g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 1.9e-184 651.0 1269 40.3
Eucgr.H00119 Eucalyptus grandis HOM05D005126 ORTHO05D006169 7.1e-184 649.0 1242 39.9
Peaxi162Scf00931g00055 Petunia axillaris HOM05D005126 ORTHO05D006169 5.6e-181 639.4 1267 40.2
Nitab4.5_0006456g0050 Nicotiana tabacum HOM05D005126 ORTHO05D006169 1.8e-179 634.4 1274 39.8
PGSC0003DMG400021720 Solanum tuberosum HOM05D005126 ORTHO05D006169 2.6e-178 630.6 1274 39.5
Sopen02g024620 Solanum pennellii HOM05D005126 ORTHO05D006169 1.3e-177 628.2 1274 39.4
Hma1.2p1_0809F.1_g221780 Hydrangea macrophylla HOM05D005126 ORTHO05D006169 1.7e-174 617.8 1125 42.8
Lj2C276T6 Lonicera japonica HOM05D005126 ORTHO05D006169 6.2e-172 609.4 1220 40.2
AUR62006818 Chenopodium quinoa HOM05D005126 ORTHO05D006169 1.8e-171 607.8 1237 38.7
Sc05g0008390 Simmondsia chinensis HOM05D005126 ORTHO05D006169 1.2e-170 605.1 1235 39.8
DCAR_004173 Daucus carota HOM05D005126 ORTHO05D006169 9.6e-165 585.5 1239 40.0
Cc02_g11860 Coffea canephora HOM05D005126 ORTHO05D006169 4.8e-164 583.2 1233 39.0
SalBow4G2671 Salvia bowleyana HOM05D005126 ORTHO05D006169 3.1e-163 580.5 1228 37.8
MSTRG.4220 Avicennia marina HOM05D005126 ORTHO05D006169 1.7e-161 574.7 1201 39.2
AUR62000477 Chenopodium quinoa HOM05D005126 ORTHO05D006169 1.1e-157 562.0 1220 37.5
EL10Ac4g09560 Beta vulgaris HOM05D005126 ORTHO05D006169 8.1e-156 555.8 1233 36.9
Ah.06g190720 Amaranthus hybridus HOM05D005126 ORTHO05D006169 2.4e-155 554.3 1242 36.7
Actinidia26962 Actinidia chinensis HOM05D005126 ORTHO05D006169 4.0e-155 553.5 1043 41.6
PGR031G2928 Punica granatum HOM05D005126 ORTHO05D006169 2.9e-153 547.4 1235 37.2
CDE01G0539 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 1.4e-152 545.0 1419 35.4
Hund23540 Selenicereus undatus HOM05D005126 ORTHO05D006169 4.2e-152 543.5 1248 37.0
ECA236G2220 Erigeron canadensis HOM05D005126 ORTHO05D006169 1.6e-148 531.6 1252 37.3
ATR0804G089 Amborella trichopoda HOM05D005126 ORTHO05D006169 3.7e-148 530.4 1286 36.0
Oeu015946.3 Olea europaea HOM05D005126 ORTHO05D006169 8.2e-148 529.3 1223 36.8
Oeu045309.1 Olea europaea HOM05D005126 ORTHO05D006169 2.9e-145 520.8 643 51.9
Migut.N00381 Erythranthe guttata HOM05D005126 ORTHO05D006169 2.2e-137 494.6 1242 36.6
Zm00001eb245580 Zea mays HOM05D005126 ORTHO05D006169 2.7e-135 487.6 1264 34.4
TAR626G0500 Trochodendron aralioides HOM05D005126 ORTHO05D006169 3.6e-135 487.3 519 58.0
SEGI_24274 Sequoiadendron giganteum HOM05D005126 ORTHO05D006169 6.9e-131 473.0 1404 33.8
Cpa.g.c45157 Carica papaya HOM05D005126 ORTHO05D006169 2.2e-129 468.0 457 61.5
Os03g0669800 Oryza sativa ssp. japonica HOM05D005126 ORTHO05D006169 7.4e-125 453.0 824 40.3
Atru.chr10.2052 Acer truncatum HOM05D005126 ORTHO05D006169 3.8e-121 440.7 507 55.8
HanXRQChr05g0130831 Helianthus annuus HOM05D005126 ORTHO05D006169 1.5e-120 438.7 1185 33.8
Lsat_1_v5_gn_7_18540 Lactuca sativa HOM05D005126 ORTHO05D006169 9.4e-120 436.0 1177 35.0
unitig_736.g22481 Utricularia gibba HOM05D005126 ORTHO05D006169 1.2e-109 402.5 1195 32.0
SGA_v2.0_scaffold216G42402 Striga asiatica HOM05D005126 ORTHO05D006169 7.7e-106 389.8 1177 32.7
Cpa.g.sc871.1 Carica papaya HOM05D005126 ORTHO05D006169 3.5e-98 364.4 461 51.8
AagrBONN_evm.TU.Sc2ySwM_368.2701 Anthoceros agrestis HOM05D005126 ORTHO05D006169 1.9e-88 332.0 1428 28.5
Pp3c16_8350 Physcomitrium patens HOM05D005126 ORTHO05D006169 4.3e-88 330.9 1365 28.5
CDE12G0914 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 1.2e-87 329.3 631 40.1
CSS0026607 Camellia sinensis var. sinensis HOM05D005126 ORTHO05D006169 1.5e-85 322.4 569 41.8
Prupe.4G011500 Prunus persica HOM05D005126 ORTHO05D006169 2.7e-74 285.0 643 39.2
GSVIVG01002717001 Vitis vinifera HOM05D005126 ORTHO05D006169 3.0e-73 281.6 413 45.3
SMO141G0003 Selaginella moellendorffii HOM05D005126 ORTHO05D006169 1.5e-72 279.3 1157 28.8
HPP92_016843 Vanilla planifolia HOM05D005126 ORTHO05D006169 4.3e-72 277.7 447 43.8
Mapoly0032s0118 Marchantia polymorpha HOM05D005126 ORTHO05D006169 9.6e-64 250.0 1341 27.7
BcaB04g20360 Brassica carinata HOM05D005126 ORTHO05D006169 2.0e-61 242.3 499 41.1
GSVIVG01006464001 Vitis vinifera HOM05D005126 ORTHO05D006169 6.2e-55 220.7 568 34.0
TAR626G1585 Trochodendron aralioides HOM05D005126 ORTHO05D006169 1.8e-54 219.2 501 37.3
Oeu030881.1 Olea europaea HOM05D005126 ORTHO05D006169 2.4e-51 208.8 281 50.9
BcaB04g20358 Brassica carinata HOM05D005126 ORTHO05D006169 1.2e-50 206.5 487 39.2
arahy.Tifrunner.gnm1.ann1.TF7ZQX Arachis hypogaea HOM05D005126 ORTHO05D006169 6.0e-50 204.1 274 49.3
FAN25G0472 Fragaria x ananassa HOM05D005126 ORTHO05D006169 2.3e-49 202.2 203 59.6
TAR626G0260 Trochodendron aralioides HOM05D005126 ORTHO05D006169 7.9e-42 177.2 157 66.9
CDE12G0347 Ceratophyllum demersum HOM05D005126 ORTHO05D006169 5.8e-37 161.0 758 28.5
Atru.chr10.2054 Acer truncatum HOM05D005126 ORTHO05D006169 2.5e-35 155.6 133 72.2
Atru.chr10.2050 Acer truncatum HOM05D005126 ORTHO05D006169 2.7e-34 152.1 129 67.4
SHI02133 Sapria himalayana HOM05D005126 ORTHO05D006169 6.7e-33 147.5 259 40.2
CBR_g52260 Chara braunii HOM05D005126 ORTHO05D006169 5.3e-30 137.9 966 25.1
FvH4_3g03071 Fragaria vesca HOM05D005126 ORTHO05D006169 1.1e-22 113.6 192 43.8
Atru.chr10.2051 Acer truncatum HOM05D005126 ORTHO05D006169 8.5e-20 104.0 84 66.7
MELO3C007345.2 Cucumis melo HOM05D005126 ORTHO05D006169 1.2e-18 100.1 482 27.6
Psat2g029640 Pisum sativum HOM05D005126 ORTHO05D006169 6.7e-17 94.4 91 56.0
FAN25G1652 Fragaria x ananassa HOM05D005126 ORTHO05D006169 1.2e-13 83.6 64 71.9
Atru.chr10.2053 Acer truncatum HOM05D005126 ORTHO05D006169 6.7e-09 67.8 56 67.9
Psat2g029560 Pisum sativum HOM05D000058 ORTHO05D000077 4.8e-07 61.6 63 49.2


User provided reference genes

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