Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 2.4e-234 815.1 396 100.0
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 5.2e-181 637.9 348 89.1
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 4.6e-177 624.8 348 88.8
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 4.0e-173 611.7 348 85.3
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 2.0e-172 609.4 335 88.4
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.9e-171 605.5 347 85.3
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.8e-171 605.1 347 85.3
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.8e-171 605.1 347 85.3
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.1e-165 587.0 347 81.8
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.9e-163 578.9 348 81.3
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.4e-163 577.4 348 81.0
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.6e-161 573.2 348 81.0
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 4.6e-161 571.6 348 81.0
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 1.3e-158 563.5 348 79.9
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 1.3e-158 563.5 348 79.9
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.5e-156 556.6 350 76.9
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 4.9e-155 551.6 356 76.1
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 1.1e-154 550.4 354 75.4
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 1.4e-154 550.1 350 76.9
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 7.1e-154 547.7 356 75.6
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.2e-153 547.0 347 77.2
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 1.1e-151 540.4 365 73.2
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.9e-151 539.7 355 73.2
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.9e-151 539.7 350 75.7
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 2.5e-151 539.3 347 75.8
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 4.3e-151 538.5 356 72.8
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-150 536.6 357 73.9
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-150 536.6 357 73.9
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 2.1e-150 536.2 352 74.1
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.8e-150 535.8 372 71.2
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 3.1e-149 532.3 345 75.4
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 4.0e-149 531.9 345 75.4
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 6.9e-149 531.2 349 74.2
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 9.0e-149 530.8 341 75.7
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 2.6e-148 529.3 350 75.1
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.6e-148 529.3 348 74.4
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 3.4e-148 528.9 349 74.2
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 4.5e-148 528.5 348 74.4
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 4.9e-147 525.0 353 72.8
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 8.4e-147 524.2 374 70.6
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.4e-146 523.5 359 71.9
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.2e-146 522.3 348 72.4
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 1.6e-145 520.0 342 74.6
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 1.6e-145 520.0 343 74.1
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 3.5e-145 518.8 343 76.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 6.0e-145 518.1 352 71.6
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 7.9e-145 517.7 355 69.9
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.0e-144 517.3 357 71.4
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 1.8e-144 516.5 364 72.0
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 3.0e-144 515.8 355 69.3
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 3.0e-144 515.8 352 72.2
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 6.7e-144 514.6 352 71.3
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.1e-143 513.8 356 70.2
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.9e-143 513.1 373 68.9
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 1.3e-142 510.4 352 71.3
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 4.8e-142 508.4 360 68.6
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.1e-141 507.3 355 69.6
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 2.4e-141 506.1 373 67.3
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 6.9e-141 504.6 356 69.4
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 1.2e-140 503.8 355 71.0
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 2.0e-140 503.1 348 72.1
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 3.4e-140 502.3 356 70.8
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.3e-139 500.4 356 69.4
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 2.9e-139 499.2 355 69.9
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.9e-139 499.2 355 68.5
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 2.9e-139 499.2 373 67.8
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 5.0e-139 498.4 355 69.0
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.1e-138 497.3 355 69.6
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 2.5e-138 496.1 370 67.6
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 5.5e-138 495.0 357 70.9
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 4.6e-137 491.9 355 68.2
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.8e-136 490.0 350 69.7
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 2.3e-136 489.6 357 67.8
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 6.7e-136 488.0 349 68.8
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.1e-135 487.3 348 69.5
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 2.5e-135 486.1 357 67.5
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 4.3e-135 485.3 350 69.4
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 4.3e-135 485.3 357 67.2
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 1.7e-134 483.4 348 69.3
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 2.2e-134 483.0 350 69.7
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 3.7e-134 482.3 354 70.3
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 4.8e-134 481.9 348 70.1
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 3.1e-133 479.2 367 67.8
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 5.3e-133 478.4 350 68.3
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 6.9e-133 478.0 356 66.3
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 6.9e-133 478.0 350 68.6
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 3.4e-132 475.7 350 69.4
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.0e-131 474.2 324 69.4
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 2.9e-131 472.6 350 68.9
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 5.0e-131 471.9 348 69.0
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 2.5e-130 469.5 350 68.3
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 2.5e-130 469.5 343 69.4
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 4.2e-130 468.8 348 68.4
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 4.2e-130 468.8 348 68.4
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 3.6e-129 465.7 372 62.1
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-128 463.8 343 69.1
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 1.8e-128 463.4 325 70.2
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.3e-128 463.0 353 66.6
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.9e-128 462.2 343 68.5
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 5.1e-128 461.8 369 62.9
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 4.4e-127 458.8 354 65.8
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.2e-126 456.4 351 67.5
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 2.8e-126 456.1 342 67.5
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.4e-125 453.8 347 64.3
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 7.0e-125 451.4 342 67.8
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 9.1e-125 451.1 347 66.9
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 5.9e-124 448.4 348 67.0
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 1.0e-123 447.6 354 62.7
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 1.7e-123 446.8 348 66.4
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.7e-123 446.8 348 65.8
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 5.5e-122 441.8 356 62.6
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 4.7e-121 438.7 348 64.9
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 1.4e-120 437.2 367 58.6
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 5.2e-120 435.3 366 60.1
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 8.8e-120 434.5 328 69.8
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 7.4e-119 431.4 342 65.2
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.3e-118 430.6 375 61.1
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.1e-117 427.6 312 66.7
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.1e-117 427.6 348 62.1
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 1.4e-117 427.2 340 63.8
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 1.6e-116 423.7 329 67.5
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.6e-116 423.7 528 47.3
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 3.5e-116 422.5 421 54.4
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 3.6e-113 412.5 353 58.4
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 2.3e-112 409.8 345 61.7
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 1.3e-110 404.1 331 60.1
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 3.7e-110 402.5 367 57.2
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 9.1e-109 397.9 434 51.6
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 7.2e-106 388.3 416 51.7
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.8e-104 383.6 373 56.0
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 2.0e-103 380.2 320 62.5
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.2e-100 370.9 361 52.6
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.6e-92 344.0 232 70.7
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 2.0e-92 343.6 342 53.2
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 2.9e-91 339.7 345 51.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 8.9e-88 328.2 384 47.7
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.7e-83 313.9 376 44.9
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 4.6e-76 289.3 226 71.7
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 1.0e-75 288.1 308 53.2
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.5e-71 274.2 166 75.9
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.6e-71 273.5 373 43.2
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.4e-69 266.9 376 41.2
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 6.6e-67 258.8 240 53.8
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 1.5e-66 257.7 254 56.7
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 1.5e-66 257.7 254 56.7
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 6.2e-65 252.3 219 63.5
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 2.0e-63 247.3 348 39.9
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 2.9e-62 243.4 388 35.8
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 6.4e-62 242.3 193 65.8
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 9.2e-61 238.4 219 60.7
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 4.2e-53 213.0 155 69.0
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.6e-49 201.1 133 75.9
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 2.1e-44 184.1 128 64.1
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.2e-37 159.8 354 30.5
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 6.0e-36 156.0 102 72.5
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.5e-31 139.8 340 31.5
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.2e-30 137.5 122 55.7
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 5.1e-27 126.3 72 72.2
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 3.0e-19 100.5 78 65.4
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.1e-16 90.1 63 68.3
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.4e-08 64.3 33 72.7


User provided reference genes

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