Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib106G0172 Durio zibethinus HOM05D008140 ORTHO05D009650 7.8e-98 360.5 192 100.0
Thecc.10G110900 Theobroma cacao HOM05D008140 ORTHO05D009650 4.9e-68 261.5 190 80.0
COL.COLO4_06812 Corchorus olitorius HOM05D008140 ORTHO05D009650 5.9e-53 211.5 201 65.7
MD07G1068400 Malus domestica HOM05D008140 ORTHO05D009650 7.5e-32 141.4 169 49.1
Prupe.2G086100 Prunus persica HOM05D008140 ORTHO05D009650 1.7e-31 140.2 172 50.0
QL04p042101 Quercus lobata HOM05D008140 ORTHO05D009650 1.1e-30 137.5 162 46.9
Potri.010G235400 Populus trichocarpa HOM05D008140 ORTHO05D009650 1.4e-30 137.1 162 48.1
CiPaw.13G036800 Carya illinoinensis HOM05D008140 ORTHO05D009650 2.4e-30 136.3 175 48.0
Cfa011233 Carpinus fangiana HOM05D008140 ORTHO05D009650 5.3e-30 135.2 182 48.9
Haze_02596 Corylus avellana HOM05D008140 ORTHO05D009650 7.0e-30 134.8 176 46.6
Cfa011234 Carpinus fangiana HOM05D008140 ORTHO05D009650 9.1e-30 134.4 180 45.6
Sabra10G0182500 Salix brachista HOM05D008140 ORTHO05D009650 1.2e-29 134.0 154 51.3
FAN01G1993 Fragaria x ananassa HOM05D008140 ORTHO05D009650 1.0e-28 131.0 188 47.3
FAN03G1479 Fragaria x ananassa HOM05D008140 ORTHO05D009650 1.7e-28 130.2 164 50.6
FvH4_7g05940 Fragaria vesca HOM05D008140 ORTHO05D009650 1.1e-27 127.5 164 49.4
FAN06G2722 Fragaria x ananassa HOM05D008140 ORTHO05D009650 1.1e-27 127.5 164 49.4
RcHm_v2.0_Chr1g0333151 Rosa chinensis HOM05D008140 ORTHO05D009650 4.2e-27 125.6 165 47.3
FAN10G4346 Fragaria x ananassa HOM05D008140 ORTHO05D009650 7.2e-27 124.8 164 48.8
Potri.008G025200 Populus trichocarpa HOM05D008140 ORTHO05D009650 7.2e-27 124.8 156 46.8
QL04p041480 Quercus lobata HOM05D008140 ORTHO05D009650 9.4e-27 124.4 174 45.4
Potri.008G025100 Populus trichocarpa HOM05D008140 ORTHO05D009650 1.6e-26 123.6 156 45.5
RcHm_v2.0_Chr1g0333141 Rosa chinensis HOM05D008140 ORTHO05D009650 1.6e-26 123.6 165 46.7
Ciclev10033301m.g Citrus clementina HOM05D008140 ORTHO05D009650 3.6e-26 122.5 172 44.8
Haze_02595 Corylus avellana HOM05D008140 ORTHO05D009650 2.8e-23 112.8 177 41.2
CiPaw.13G036900 Carya illinoinensis HOM05D008140 ORTHO05D009650 4.8e-23 112.1 170 44.1
Sabra08G0016900 Salix brachista HOM05D008140 ORTHO05D009650 8.3e-23 111.3 156 45.5
QL04p041665 Quercus lobata HOM05D008140 ORTHO05D009650 3.1e-22 109.4 166 43.4
CiPaw.14G029100 Carya illinoinensis HOM05D008140 ORTHO05D009650 3.5e-21 105.9 175 39.4
QL04p041477 Quercus lobata HOM05D008140 ORTHO05D009650 7.7e-21 104.8 134 44.8
TAR636G0417 Trochodendron aralioides HOM05D008140 ORTHO05D009650 1.9e-19 100.1 111 50.5
Carub.0004s2081 Capsella rubella HOM05D008140 ORTHO05D009650 3.6e-18 95.9 147 42.2
THA.LOC104803169 Tarenaya hassleriana HOM05D008140 ORTHO05D009650 3.6e-18 95.9 139 41.7
Haze_02597 Corylus avellana HOM05D008140 ORTHO05D009650 8.0e-18 94.7 126 48.4
TWI38G0562 Tripterygium wilfordii HOM05D008140 ORTHO05D009650 8.0e-18 94.7 160 40.6
AL4G36090 Arabidopsis lyrata HOM05D008140 ORTHO05D009650 4.0e-17 92.4 148 40.5
Cfa011231 Carpinus fangiana HOM05D008140 ORTHO05D009650 8.9e-17 91.3 126 45.2
Lalb_Chr06g0170171 Lupinus albus HOM05D008140 ORTHO05D009650 1.2e-16 90.9 153 40.5
AT2G38790 Arabidopsis thaliana HOM05D008140 ORTHO05D009650 2.0e-16 90.1 152 38.2
BolC4t22473H Brassica oleracea HOM05D008140 ORTHO05D009650 1.1e-14 84.3 147 38.8
Cfa011235 Carpinus fangiana HOM05D008140 ORTHO05D009650 1.1e-14 84.3 165 35.2
C04p08800 Brassica napus HOM05D008140 ORTHO05D009650 1.8e-14 83.6 147 38.8
BcaC02g12023 Brassica carinata HOM05D008140 ORTHO05D009650 2.4e-14 83.2 147 38.8
Sp4g21180 Schrenkiella parvula HOM05D008140 ORTHO05D009650 2.4e-14 83.2 150 38.0
THA.LOC104803183 Tarenaya hassleriana HOM05D008140 ORTHO05D009650 2.4e-14 83.2 99 46.5
Cpa.g.sc19.24 Carica papaya HOM05D008140 ORTHO05D009650 4.1e-14 82.4 156 37.2
A05p07360 Brassica napus HOM05D008140 ORTHO05D009650 7.0e-14 81.6 147 38.1
BraA05t19701Z Brassica rapa HOM05D008140 ORTHO05D009650 7.0e-14 81.6 147 38.1
Manes.07G090200 Manihot esculenta HOM05D008140 ORTHO05D009650 7.0e-14 81.6 130 41.5
BcaB02g09155 Brassica carinata HOM05D008140 ORTHO05D009650 9.2e-14 81.3 146 38.4
BcaB02g09156 Brassica carinata HOM05D008140 ORTHO05D009650 9.2e-14 81.3 146 38.4
A05p07380 Brassica napus HOM05D008140 ORTHO05D009650 9.2e-14 81.3 147 38.1
BraA05t19703Z Brassica rapa HOM05D008140 ORTHO05D009650 9.2e-14 81.3 147 38.1
Peaxi162Scf00244g00075 Petunia axillaris HOM05D009634 ORTHO05D009650 2.0e-13 80.1 91 51.6
CANSAT56G1901 Cannabis sativa HOM05D008140 ORTHO05D009650 2.7e-13 79.7 177 33.9
A03p21600 Brassica napus HOM05D008140 ORTHO05D009650 3.5e-13 79.3 138 38.4
BraA03t11396Z Brassica rapa HOM05D008140 ORTHO05D009650 3.5e-13 79.3 138 38.4
Rhsim03G0105800 Rhododendron simsii HOM05D008140 ORTHO05D009650 4.5e-13 79.0 99 47.5
CARHR133500 Cardamine hirsuta HOM05D008140 ORTHO05D009650 7.8e-13 78.2 153 38.6
CiPaw.13G036700 Carya illinoinensis HOM05D008140 ORTHO05D009650 7.8e-13 78.2 136 40.4
C03p25590 Brassica napus HOM05D008140 ORTHO05D009650 1.7e-12 77.0 137 37.2
BolC3t14947H Brassica oleracea HOM05D008140 ORTHO05D009650 1.7e-12 77.0 137 37.2
Nitab4.5_0012334g0020 Nicotiana tabacum HOM05D009634 ORTHO05D009650 8.6e-12 74.7 93 50.5
Oeu059859.1 Olea europaea HOM05D009634 ORTHO05D009650 1.2e-10 70.9 101 44.6
Oeu026565.1 Olea europaea HOM05D009634 ORTHO05D009650 1.6e-10 70.5 100 44.0
TAR636G1773 Trochodendron aralioides HOM05D013129 ORTHO05D015736 2.8e-10 69.7 97 43.3
Sopen11g003360 Solanum pennellii HOM05D009634 ORTHO05D009650 3.6e-10 69.3 137 32.1
Aqoxy2G01366 Aquilegia oxysepala HOM05D008140 ORTHO05D009650 1.0e-09 67.8 119 33.6
Solyc11g007520.1 Solanum lycopersicum HOM05D009634 ORTHO05D009650 1.4e-09 67.4 132 33.3
Nitab4.5_0001850g0010 Nicotiana tabacum HOM05D009634 ORTHO05D009650 1.8e-09 67.0 123 41.5
PGSC0003DMG400027311 Solanum tuberosum HOM05D009634 ORTHO05D009650 2.3e-09 66.6 125 33.6
Nitab4.5_0002878g0060 Nicotiana tabacum HOM05D009634 ORTHO05D009650 3.1e-09 66.2 93 47.3
Nitab4.5_0002878g0010 Nicotiana tabacum HOM05D009634 ORTHO05D009650 8.9e-09 64.7 94 40.4
Nitab4.5_0002878g0050 Nicotiana tabacum HOM05D009634 ORTHO05D009650 2.0e-08 63.5 92 44.6
QL04p041649 Quercus lobata HOM05D013129 ORTHO05D015736 2.6e-08 63.2 170 30.6
QL04p041992 Quercus lobata HOM05D013129 ORTHO05D015736 2.6e-08 63.2 170 30.6
QL04p042057 Quercus lobata HOM05D013129 ORTHO05D015736 2.6e-08 63.2 164 30.5
SalBow6G2478 Salvia bowleyana HOM05D009634 ORTHO05D009650 5.8e-08 62.0 104 41.3
Peaxi162Scf00244g00074 Petunia axillaris HOM05D009634 ORTHO05D009650 7.5e-08 61.6 95 37.9
SalBow6G4194 Salvia bowleyana HOM05D009634 ORTHO05D009650 9.8e-08 61.2 124 35.5
QL04p042000 Quercus lobata HOM05D013129 ORTHO05D015736 1.7e-07 60.5 166 30.1
SalBow6G5252 Salvia bowleyana HOM05D009634 ORTHO05D009650 1.7e-07 60.5 104 40.4
QL04p041596 Quercus lobata HOM05D013129 ORTHO05D015736 2.2e-07 60.1 164 31.1
CAN.G135.81 Capsicum annuum HOM05D009634 ORTHO05D009650 3.7e-07 59.3 123 38.2
QL04p042031 Quercus lobata HOM05D013129 ORTHO05D015736 3.7e-07 59.3 190 27.4
QL04p041658 Quercus lobata HOM05D013129 ORTHO05D015736 4.9e-07 58.9 166 29.5
PGSC0003DMG400027312 Solanum tuberosum HOM05D009634 ORTHO05D009650 1.4e-06 57.4 116 33.6
Migut.F00890 Erythranthe guttata HOM05D009634 ORTHO05D009650 2.4e-06 56.6 107 36.4
QL04p041613 Quercus lobata HOM05D013129 ORTHO05D015736 4.1e-06 55.8 164 29.3
QL04p041837 Quercus lobata HOM05D013129 ORTHO05D015736 4.1e-06 55.8 162 30.2
QL04p041942 Quercus lobata HOM05D013129 ORTHO05D015736 5.4e-06 55.5 164 29.3
Ah.04g163690 Amaranthus hybridus HOM05D009634 ORTHO05D009650 7.0e-06 55.1 97 34.0


User provided reference genes

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