Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 8.9e-57 223.4 114 100.0
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 1.0e-36 156.8 107 81.3
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 5.1e-36 154.5 107 79.4
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 5.1e-36 154.5 107 81.3
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 8.6e-36 153.7 107 80.4
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 4.3e-35 151.4 107 80.4
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 5.6e-35 151.0 107 80.4
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 1.3e-31 139.8 106 72.6
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 1.3e-31 139.8 109 70.6
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 1.3e-31 139.8 108 74.1
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 2.2e-31 139.0 111 70.3
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 8.4e-31 137.1 105 70.5
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.4e-30 134.4 106 70.8
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 7.1e-30 134.0 106 70.8
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 9.2e-30 133.7 97 77.3
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 1.6e-29 132.9 85 82.4
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 1.6e-29 132.9 106 68.9
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 2.1e-29 132.5 102 72.5
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 2.7e-29 132.1 98 74.5
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 1.0e-28 130.2 98 72.4
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.0e-28 130.2 94 73.4
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 1.3e-28 129.8 96 76.0
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.3e-28 129.8 81 81.5
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 1.7e-28 129.4 100 70.0
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 2.3e-28 129.0 83 81.9
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.3e-28 129.0 85 80.0
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 2.3e-28 129.0 85 80.0
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 3.0e-28 128.6 106 67.9
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 3.9e-28 128.3 106 67.0
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 5.1e-28 127.9 81 82.7
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 6.6e-28 127.5 81 82.7
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.6e-28 127.5 81 82.7
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 8.6e-28 127.1 96 72.9
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 8.6e-28 127.1 89 75.3
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.1e-27 126.7 99 71.7
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 1.1e-27 126.7 104 70.2
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 1.5e-27 126.3 98 72.4
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 1.5e-27 126.3 98 70.4
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.9e-27 125.9 81 84.0
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.9e-27 125.9 94 71.3
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 3.3e-27 125.2 100 72.0
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 4.3e-27 124.8 96 72.9
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 5.6e-27 124.4 81 82.7
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 9.6e-27 123.6 107 65.4
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 9.6e-27 123.6 79 81.0
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 9.6e-27 123.6 94 73.4
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.2e-26 123.2 81 80.2
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 1.2e-26 123.2 95 73.7
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 1.6e-26 122.9 107 66.4
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 2.1e-26 122.5 94 70.2
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 3.6e-26 121.7 100 67.0
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 3.6e-26 121.7 108 62.0
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 4.7e-26 121.3 76 85.5
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 4.7e-26 121.3 97 69.1
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 4.7e-26 121.3 93 72.0
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 6.2e-26 120.9 105 65.7
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 8.1e-26 120.6 96 68.8
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.1e-25 120.2 99 68.7
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 1.1e-25 120.2 95 71.6
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 1.1e-25 120.2 95 71.6
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 1.4e-25 119.8 83 75.9
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 1.4e-25 119.8 113 60.2
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 1.8e-25 119.4 85 75.3
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 1.8e-25 119.4 81 79.0
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 2.4e-25 119.0 99 64.6
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.4e-25 119.0 83 74.7
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 2.4e-25 119.0 107 61.7
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 3.1e-25 118.6 99 66.7
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 4.0e-25 118.2 98 66.3
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 4.0e-25 118.2 98 66.3
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 6.9e-25 117.5 87 71.3
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 8.9e-25 117.1 94 69.1
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 8.9e-25 117.1 81 74.1
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 1.2e-24 116.7 107 57.9
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 1.2e-24 116.7 96 65.6
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 1.2e-24 116.7 89 73.0
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 2.0e-24 115.9 105 63.8
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 2.6e-24 115.5 99 62.6
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 2.6e-24 115.5 95 67.4
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 3.4e-24 115.2 94 69.1
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.4e-24 115.2 99 62.6
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 4.4e-24 114.8 95 65.3
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 4.4e-24 114.8 80 77.5
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 4.4e-24 114.8 77 80.5
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 7.6e-24 114.0 76 80.3
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 7.6e-24 114.0 94 67.0
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 7.6e-24 114.0 73 83.6
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 9.9e-24 113.6 82 76.8
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 9.9e-24 113.6 95 66.3
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 9.9e-24 113.6 78 78.2
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 9.9e-24 113.6 92 69.6
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 1.3e-23 113.2 88 68.2
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.7e-23 112.8 76 78.9
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 2.9e-23 112.1 110 60.0
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 8.4e-23 110.5 92 68.5
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 8.4e-23 110.5 92 68.5
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 8.4e-23 110.5 91 68.1
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 8.4e-23 110.5 81 74.1
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.4e-22 109.8 78 75.6
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 1.4e-22 109.8 82 72.0
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 2.4e-22 109.0 98 63.3
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 2.4e-22 109.0 102 61.8
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 3.2e-22 108.6 100 61.0
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 4.2e-22 108.2 91 65.9
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 4.2e-22 108.2 91 65.9
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 9.3e-22 107.1 100 62.0
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 9.3e-22 107.1 100 62.0
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 9.3e-22 107.1 100 60.0
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 1.2e-21 106.7 100 59.0
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 2.7e-21 105.5 100 59.0
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 2.7e-21 105.5 100 60.0
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 3.5e-21 105.1 76 72.4
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 4.6e-21 104.8 92 64.1
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 4.6e-21 104.8 92 64.1
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 4.6e-21 104.8 92 64.1
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 7.8e-21 104.0 74 74.3
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 7.8e-21 104.0 79 68.4
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 1.3e-20 103.2 87 64.4
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 1.3e-20 103.2 100 59.0
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 5.1e-20 101.3 88 62.5
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-20 101.3 88 62.5
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 5.1e-20 101.3 88 62.5
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 1.1e-19 100.1 88 61.4
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 1.1e-19 100.1 88 61.4
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 1.1e-19 100.1 88 61.4
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 1.1e-19 100.1 88 61.4
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 2.8e-18 95.5 78 65.4
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 8.1e-18 94.0 72 68.1
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 8.1e-18 94.0 72 68.1
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 8.1e-18 94.0 72 68.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 1.4e-17 93.2 74 67.6
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 7.6e-16 87.4 75 61.3
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.7e-15 86.3 77 59.7
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 4.9e-15 84.7 80 57.5
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 3.2e-14 82.0 74 60.8
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 5.4e-14 81.3 75 58.7
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 1.8e-12 76.3 82 54.9
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 8.7e-12 73.9 56 67.9
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 8.7e-12 73.9 56 67.9
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 2.5e-11 72.4 84 53.6
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.5e-11 72.4 65 61.5
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 5.6e-11 71.2 70 55.7
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 1.8e-09 66.2 40 80.0
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 3.1e-09 65.5 51 64.7
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 6.9e-09 64.3 83 43.4
DCAR_010593 Daucus carota HOM05D005626 ORTHO05D007372 5.5e-06 54.7 40 67.5


User provided reference genes

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