Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 3.8e-108 394.8 196 100.0
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 4.9e-63 245.0 162 75.3
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 6.4e-63 244.6 142 82.4
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 2.7e-61 239.2 139 81.3
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.6e-61 238.4 143 81.8
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 7.8e-61 237.7 142 80.3
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 7.8e-61 237.7 144 81.2
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.0e-60 235.7 144 80.6
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.0e-60 235.7 144 80.6
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 3.0e-60 235.7 144 80.6
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 6.6e-60 234.6 143 80.4
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 7.3e-59 231.1 143 78.3
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 2.1e-58 229.6 149 77.2
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 8.1e-58 227.6 143 77.6
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 1.1e-57 227.3 142 74.6
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.1e-57 225.7 142 76.8
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.0e-57 225.3 144 79.2
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 4.0e-57 225.3 143 77.6
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 8.9e-57 224.2 146 76.0
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.0e-56 223.0 141 74.5
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.0e-56 223.0 146 74.7
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.6e-56 222.6 144 75.7
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 2.6e-56 222.6 146 74.7
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 3.4e-56 222.2 139 76.3
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 3.4e-56 222.2 145 73.8
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 5.8e-56 221.5 142 76.8
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 5.8e-56 221.5 143 76.2
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 7.6e-56 221.1 145 76.6
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 7.6e-56 221.1 142 75.4
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 9.9e-56 220.7 145 76.6
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.3e-55 220.3 145 76.6
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 2.2e-55 219.5 141 74.5
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 2.2e-55 219.5 148 73.0
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.9e-55 219.2 142 75.4
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 3.8e-55 218.8 144 73.6
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.9e-55 218.4 132 80.3
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 4.9e-55 218.4 146 73.3
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 4.9e-55 218.4 145 75.9
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.1e-54 217.2 152 71.7
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.1e-54 217.2 145 72.4
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.4e-54 216.9 142 73.9
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.4e-54 216.9 142 72.5
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.4e-54 216.9 144 74.3
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 1.9e-54 216.5 140 74.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 2.4e-54 216.1 136 77.9
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 3.2e-54 215.7 142 73.2
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 3.2e-54 215.7 146 72.6
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.2e-54 215.7 146 70.5
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 4.2e-54 215.3 143 72.7
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 5.4e-54 214.9 142 73.2
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 5.4e-54 214.9 142 73.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 5.4e-54 214.9 142 71.1
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 5.4e-54 214.9 143 74.1
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 9.2e-54 214.2 142 73.9
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.2e-53 213.8 149 71.1
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.2e-53 213.8 144 70.1
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.6e-53 213.4 142 71.1
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.6e-53 213.4 142 70.4
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.6e-53 213.4 142 70.4
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 1.6e-53 213.4 142 70.4
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.6e-53 213.4 142 71.8
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 2.1e-53 213.0 152 69.1
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.7e-53 212.6 144 71.5
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 3.5e-53 212.2 142 69.7
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 3.5e-53 212.2 142 69.7
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.6e-53 211.8 142 71.1
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 6.0e-53 211.5 142 71.1
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 7.8e-53 211.1 142 69.0
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 1.0e-52 210.7 142 73.2
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 1.7e-52 209.9 142 70.4
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 1.7e-52 209.9 145 69.7
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 2.3e-52 209.5 142 72.5
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 2.3e-52 209.5 144 70.1
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.3e-52 209.5 144 70.1
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.9e-52 208.8 143 69.9
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 3.9e-52 208.8 144 70.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 5.1e-52 208.4 145 72.4
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 5.1e-52 208.4 142 69.7
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.1e-52 208.4 145 70.3
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 6.6e-52 208.0 148 68.9
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.5e-51 206.8 172 64.0
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.5e-51 206.8 172 64.0
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.5e-51 206.8 172 64.0
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.5e-51 206.8 145 70.3
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.9e-51 206.5 156 67.9
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 3.3e-51 205.7 179 60.3
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.3e-51 205.3 145 70.3
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 9.6e-51 204.1 134 73.9
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 9.6e-51 204.1 144 69.4
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.2e-50 203.8 135 71.9
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 1.6e-50 203.4 144 68.8
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.1e-50 203.0 148 68.2
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.1e-50 203.0 144 68.1
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 2.1e-50 203.0 135 71.9
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 2.1e-50 203.0 135 71.9
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 3.6e-50 202.2 142 68.3
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 6.2e-50 201.4 142 68.3
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 6.9e-49 198.0 182 60.4
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 9.0e-49 197.6 143 67.8
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 9.0e-49 197.6 146 67.1
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.5e-48 196.8 147 68.7
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.0e-48 196.4 140 65.7
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 2.6e-48 196.1 134 73.1
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.4e-48 195.3 145 68.3
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 7.6e-48 194.5 143 65.7
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 6.4e-47 191.4 153 59.5
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.0e-44 184.1 140 64.3
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 5.1e-44 181.8 205 48.8
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.5e-43 180.3 160 62.5
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.9e-43 179.9 168 56.5
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 2.1e-42 176.4 96 88.5
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.4e-41 173.7 181 54.7
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 1.5e-40 170.2 233 42.9
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 5.8e-40 168.3 110 72.7
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.8e-40 168.3 107 73.8
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 9.9e-40 167.5 158 58.9
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 9.3e-38 161.0 107 72.9
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.0e-36 157.5 159 50.3
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.3e-36 157.1 119 68.1
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 3.0e-36 156.0 108 67.6
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 1.5e-35 153.7 145 56.6
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 9.6e-35 151.0 91 76.9
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.4e-33 147.1 119 66.4
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 3.4e-32 142.5 140 50.7
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.9e-30 136.7 84 70.2
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 2.5e-30 136.3 143 54.5
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.2e-30 135.6 100 68.0
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 3.5e-29 132.5 106 63.2
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 5.6e-27 125.2 103 62.1
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 2.6e-24 116.3 113 43.4
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 7.6e-24 114.8 79 69.6
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 6.5e-23 111.7 113 40.7
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 6.5e-23 111.7 125 41.6
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.6e-21 107.1 99 57.6
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.0e-20 104.4 87 56.3
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.9e-19 100.1 99 53.5
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 8.2e-18 94.7 85 50.6
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 1.4e-12 77.4 88 34.1
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 3.0e-12 76.3 91 37.4
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 5.7e-11 72.0 45 68.9
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 5.7e-11 72.0 45 68.9
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 6.9e-09 65.1 84 34.5
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.7e-07 60.5 35 71.4
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.2e-07 60.1 49 59.2
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.2e-07 60.1 34 79.4
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 5.0e-07 58.9 109 32.1
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.2e-06 55.8 35 71.4
Phvul.001G073900 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 9.4e-06 54.7 39 66.7


User provided reference genes

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