Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv43710 Davidia involucrata HOM05D005813 ORTHO05D007310 3.9e-232 807.7 405 100.0
CSS0030666 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 1.4e-192 676.4 396 85.6
CSS0042195 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 1.4e-192 676.4 396 85.6
Lj7A528T62 Lonicera japonica HOM05D005813 ORTHO05D007310 1.2e-188 663.3 396 82.3
CiPaw.02G167800 Carya illinoinensis HOM05D005813 ORTHO05D007310 2.7e-185 652.1 397 82.4
Duzib138G0196 Durio zibethinus HOM05D005813 ORTHO05D007310 1.0e-184 650.2 395 80.3
PGR031G3848 Punica granatum HOM05D005813 ORTHO05D007310 5.2e-184 647.9 396 80.3
Nn1g01240 Nelumbo nucifera HOM05D005813 ORTHO05D007310 2.0e-183 646.0 394 81.5
TAR374G0529 Trochodendron aralioides HOM05D005813 ORTHO05D007310 3.4e-183 645.2 397 82.9
ClCG05G002290 Citrullus lanatus HOM05D005813 ORTHO05D007310 4.8e-182 641.3 396 79.0
Cc02_g23900 Coffea canephora HOM05D005813 ORTHO05D007310 1.6e-180 636.3 400 78.5
Cfa001724 Carpinus fangiana HOM05D005813 ORTHO05D007310 2.0e-180 636.0 397 81.9
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 5.9e-180 634.4 396 78.5
QL08p052527 Quercus lobata HOM05D005813 ORTHO05D007310 7.7e-180 634.0 397 81.4
Duzib133G0639 Durio zibethinus HOM05D005813 ORTHO05D007310 1.3e-179 633.3 396 78.3
CsaV3_3G009700 Cucumis sativus L. HOM05D005813 ORTHO05D007310 2.9e-179 632.1 396 78.0
TWI59G1428 Tripterygium wilfordii HOM05D005813 ORTHO05D007310 6.5e-179 630.9 397 79.3
MELO3C006191.2 Cucumis melo HOM05D005813 ORTHO05D007310 1.9e-178 629.4 396 77.8
Nn4g26391 Nelumbo nucifera HOM05D005813 ORTHO05D007310 1.9e-178 629.4 394 79.7
CiPaw.01G262200 Carya illinoinensis HOM05D005813 ORTHO05D007310 4.2e-178 628.2 397 80.1
Sabra02G0115400 Salix brachista HOM05D005813 ORTHO05D007310 5.5e-178 627.9 399 79.2
MSTRG.17192 Avicennia marina HOM05D005813 ORTHO05D007310 7.2e-178 627.5 397 79.1
Haze_16813 Corylus avellana HOM05D005813 ORTHO05D007310 9.5e-178 627.1 400 79.5
Migut.B01633 Erythranthe guttata HOM05D005813 ORTHO05D007310 1.2e-177 626.7 396 78.3
Sabra02G0117100 Salix brachista HOM05D005813 ORTHO05D007310 3.6e-177 625.2 399 78.7
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 6.1e-177 624.4 396 77.5
MBI04_g35272_MAGBIO Magnolia biondii HOM05D005813 ORTHO05D007310 8.0e-177 624.0 393 76.8
GSVIVG01027606001 Vitis vinifera HOM05D005813 ORTHO05D007310 8.8e-176 620.5 397 78.8
Glyma.18G220700 Glycine max HOM05D005813 ORTHO05D007310 2.2e-174 615.9 395 78.5
arahy.Tifrunner.gnm1.ann1.4B5N4V Arachis hypogaea HOM05D005813 ORTHO05D007310 4.9e-174 614.8 400 76.0
THA.LOC104817009 Tarenaya hassleriana HOM05D005813 ORTHO05D007310 4.9e-174 614.8 396 76.8
Glyma.09G269300 Glycine max HOM05D005813 ORTHO05D007310 6.3e-174 614.4 399 77.7
Sed0000354 Sechium edule HOM05D005813 ORTHO05D007310 6.3e-174 614.4 396 75.3
arahy.Tifrunner.gnm1.ann1.DKE7V3 Arachis hypogaea HOM05D005813 ORTHO05D007310 8.3e-174 614.0 400 75.8
Cpa.g.sc18.111 Carica papaya HOM05D005813 ORTHO05D007310 1.1e-173 613.6 397 77.8
Ciclev10020183m.g Citrus clementina HOM05D005813 ORTHO05D007310 4.1e-173 611.7 398 77.6
Eucgr.D02453 Eucalyptus grandis HOM05D005813 ORTHO05D007310 1.2e-172 610.1 397 75.8
SGA_v2.0_scaffold153G37009 Striga asiatica HOM05D005813 ORTHO05D007310 1.2e-172 610.1 397 75.3
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.6e-172 609.8 397 74.6
Potri.014G069400 Populus trichocarpa HOM05D005813 ORTHO05D007310 1.6e-172 609.8 398 77.4
Hund27345 Selenicereus undatus HOM05D005813 ORTHO05D007310 2.0e-172 609.4 397 74.8
Ca_11657_v3 Cicer arietinum L. HOM05D005813 ORTHO05D007310 5.9e-172 607.8 397 77.6
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 7.8e-172 607.4 396 76.5
Sc02g0002610 Simmondsia chinensis HOM05D005813 ORTHO05D007310 5.0e-171 604.7 396 75.0
Prupe.2G145000 Prunus persica HOM05D005813 ORTHO05D007310 8.6e-171 604.0 397 77.1
Solyc01g091310.3 Solanum lycopersicum HOM05D005813 ORTHO05D007310 8.6e-171 604.0 400 74.8
Potri.002G148100 Populus trichocarpa HOM05D005813 ORTHO05D007310 1.5e-170 603.2 398 76.1
Oeu055488.1 Olea europaea HOM05D005813 ORTHO05D007310 5.6e-170 601.3 424 73.3
Rhsim01G0147300 Rhododendron simsii HOM05D005813 ORTHO05D007310 5.6e-170 601.3 423 73.5
TPR.G29407 Trifolium pratense HOM05D005813 ORTHO05D007310 1.6e-169 599.7 396 75.8
Lsat_1_v5_gn_7_7160 Lactuca sativa HOM05D005813 ORTHO05D007310 2.8e-169 599.0 398 76.9
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 3.6e-169 598.6 397 73.3
Sed0028100 Sechium edule HOM05D005813 ORTHO05D007310 6.1e-169 597.8 396 75.3
Nitab4.5_0004917g0040 Nicotiana tabacum HOM05D005813 ORTHO05D007310 8.0e-169 597.4 397 74.8
MD02G1204700 Malus domestica HOM05D005813 ORTHO05D007310 1.0e-168 597.0 398 75.4
SalBow5G4545 Salvia bowleyana HOM05D005813 ORTHO05D007310 1.4e-168 596.7 397 76.1
Lalb_Chr03g0039571 Lupinus albus HOM05D005813 ORTHO05D007310 6.8e-168 594.3 396 75.0
unitig_76.g29089 Utricularia gibba HOM05D005813 ORTHO05D007310 1.2e-167 593.6 399 73.9
unitig_749.g14372 Utricularia gibba HOM05D005813 ORTHO05D007310 1.5e-167 593.2 398 74.1
Ah.05g174210 Amaranthus hybridus HOM05D005813 ORTHO05D007310 5.7e-167 591.3 397 72.0
Sopen01g037050 Solanum pennellii HOM05D005813 ORTHO05D007310 5.7e-167 591.3 402 73.6
CANSAT56G4177 Cannabis sativa HOM05D005813 ORTHO05D007310 9.8e-167 590.5 398 73.9
Sp6g00150 Schrenkiella parvula HOM05D005813 ORTHO05D007310 9.8e-167 590.5 396 74.5
HanXRQChr04g0122421 Helianthus annuus HOM05D005813 ORTHO05D007310 6.4e-166 587.8 398 75.6
EL10Ac1g00888 Beta vulgaris HOM05D005813 ORTHO05D007310 1.4e-165 586.6 398 70.9
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 1.4e-165 586.6 412 74.8
CARHR248130 Cardamine hirsuta HOM05D005813 ORTHO05D007310 1.8e-165 586.3 396 73.7
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 1.8e-165 586.3 401 74.3
ATR0810G089 Amborella trichopoda HOM05D005813 ORTHO05D007310 4.1e-165 585.1 393 72.0
Carub.0006s3714 Capsella rubella HOM05D005813 ORTHO05D007310 1.6e-164 583.2 396 73.2
C09p00110 Brassica napus HOM05D005813 ORTHO05D007310 3.5e-164 582.0 396 73.2
BraA09t35685Z Brassica rapa HOM05D005813 ORTHO05D007310 3.5e-164 582.0 396 73.2
AT4G00090 Arabidopsis thaliana HOM05D005813 ORTHO05D007310 4.6e-164 581.6 396 73.2
Medtr7g074890 Medicago truncatula HOM05D005813 ORTHO05D007310 4.6e-164 581.6 398 73.6
Phvul.008G076400 Phaseolus vulgaris HOM05D005813 ORTHO05D007310 4.6e-164 581.6 395 74.2
AL6G53420 Arabidopsis lyrata HOM05D005813 ORTHO05D007310 7.8e-164 580.9 396 73.2
Thhalv10028676m.g Eutrema salsugineum HOM05D005813 ORTHO05D007310 1.7e-163 579.7 396 73.7
BcaB01g02210 Brassica carinata HOM05D005813 ORTHO05D007310 3.0e-163 578.9 396 72.2
BcaC04g24202 Brassica carinata HOM05D005813 ORTHO05D007310 3.9e-163 578.6 396 72.7
BolC9t52946H Brassica oleracea HOM05D005813 ORTHO05D007310 3.9e-163 578.6 396 72.7
Gorai.004G040800 Gossypium raimondii HOM05D005813 ORTHO05D007310 3.9e-163 578.6 443 65.7
PSO478G4467 Papaver somniferum HOM05D005813 ORTHO05D007310 3.9e-163 578.6 393 72.5
PSO782G1692 Papaver somniferum HOM05D005813 ORTHO05D007310 1.1e-162 577.0 394 71.8
Gohir.A08G134600 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.5e-162 576.6 396 72.7
FAN10G1195 Fragaria x ananassa HOM05D005813 ORTHO05D007310 2.5e-162 575.9 397 73.8
Peaxi162Scf00013g03441 Petunia axillaris HOM05D005813 ORTHO05D007310 3.3e-162 575.5 399 73.2
FAN03G1318 Fragaria x ananassa HOM05D005813 ORTHO05D007310 4.3e-162 575.1 405 72.3
AUR62004213 Chenopodium quinoa HOM05D005813 ORTHO05D007310 2.1e-161 572.8 398 70.1
FAN01G0479 Fragaria x ananassa HOM05D005813 ORTHO05D007310 4.7e-161 571.6 396 73.5
Gohir.D08G155500 Gossypium hirsutum HOM05D005813 ORTHO05D007310 8.0e-161 570.9 396 72.2
Gorai.004G161700 Gossypium raimondii HOM05D005813 ORTHO05D007310 8.0e-161 570.9 396 72.2
FvH4_7g11840 Fragaria vesca HOM05D005813 ORTHO05D007310 3.1e-160 568.9 397 73.3
FAN06G0614 Fragaria x ananassa HOM05D005813 ORTHO05D007310 3.1e-160 568.9 397 73.3
FAN10G2798 Fragaria x ananassa HOM05D005813 ORTHO05D007310 3.4e-159 565.5 397 73.0
Aqoxy7G00631 Aquilegia oxysepala HOM05D005813 ORTHO05D007310 1.7e-158 563.1 398 72.1
Aa31LG5G9310 Aethionema arabicum HOM05D005813 ORTHO05D007310 6.4e-158 561.2 426 67.6
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 4.1e-157 558.5 399 73.4
FAN06G1564 Fragaria x ananassa HOM05D005813 ORTHO05D007310 5.4e-157 558.1 409 70.9
RcHm_v2.0_Chr1g0350521 Rosa chinensis HOM05D005813 ORTHO05D007310 7.0e-157 557.8 398 73.1
MD07G1121300 Malus domestica HOM05D005813 ORTHO05D007310 1.5e-154 550.1 402 71.6
Actinidia12685 Actinidia chinensis HOM05D005813 ORTHO05D007310 1.2e-153 547.0 397 72.5
CDE09G1050 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 1.6e-148 530.0 391 68.0
CDE11G1084 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 2.1e-148 529.6 391 68.3
Nitab4.5_0000457g0240 Nicotiana tabacum HOM05D005813 ORTHO05D007310 5.8e-143 511.5 346 74.3
SEGI_07293 Sequoiadendron giganteum HOM05D005813 ORTHO05D007310 6.4e-142 508.1 389 65.8
AUR62013635 Chenopodium quinoa HOM05D005813 ORTHO05D007310 2.4e-141 506.1 409 62.8
Psat3g115920 Pisum sativum HOM05D005813 ORTHO05D007310 7.1e-141 504.6 396 66.7
Zm00001eb065090 Zea mays HOM05D005813 ORTHO05D007310 2.7e-140 502.7 393 64.6
HPP92_003519 Vanilla planifolia HOM05D005813 ORTHO05D007310 3.9e-139 498.8 395 64.3
COL.COLO4_12543 Corchorus olitorius HOM05D005813 ORTHO05D007310 5.8e-135 485.0 396 63.6
Pp3c19_7620 Physcomitrium patens HOM05D005813 ORTHO05D007310 6.2e-121 438.3 392 57.7
Mapoly0037s0016 Marchantia polymorpha HOM05D005813 ORTHO05D007310 4.5e-119 432.2 388 58.2
AagrBONN_evm.TU.Sc2ySwM_117.33 Anthoceros agrestis HOM05D005813 ORTHO05D007310 3.8e-118 429.1 416 55.5
DCAR_015903 Daucus carota HOM05D005813 ORTHO05D007310 3.2e-117 426.0 316 69.3
SHI01708 Sapria himalayana HOM05D005813 ORTHO05D007310 1.0e-115 421.0 393 55.5
PGSC0003DMG400012776 Solanum tuberosum HOM05D005813 ORTHO05D007310 4.9e-110 402.1 232 82.3
Psat3g202640 Pisum sativum HOM05D005813 ORTHO05D007310 6.5e-110 401.7 303 68.3
A09p00750 Brassica napus HOM05D005813 ORTHO05D007310 4.6e-108 395.6 239 78.7
PSO170G3521 Papaver somniferum HOM05D005813 ORTHO05D007310 7.4e-106 388.3 350 58.6
SMO367G0685 Selaginella moellendorffii HOM05D005813 ORTHO05D007310 4.5e-103 379.0 322 57.5
CBR_g23070 Chara braunii HOM05D005813 ORTHO05D007310 2.5e-101 373.2 349 55.6
CBR_g21297 Chara braunii HOM05D005813 ORTHO05D007310 1.0e-99 367.9 358 54.5
PSO782G5041 Papaver somniferum HOM05D005813 ORTHO05D007310 3.0e-99 366.3 289 64.4
PSO675G1684 Papaver somniferum HOM05D005813 ORTHO05D007310 2.2e-73 280.4 203 66.0
Actinidia33466 Actinidia chinensis HOM05D005813 ORTHO05D007310 1.4e-64 251.1 139 84.9
PSO478G0826 Papaver somniferum HOM05D005813 ORTHO05D007310 1.0e-51 208.4 134 75.4
Cre02.g102450 Chlamydomonas reinhardtii HOM05D005813 ORTHO05D007310 2.6e-42 177.2 361 33.8
MCO05G082 Micromonas commoda HOM05D005813 ORTHO05D007310 3.5e-39 166.8 345 33.0
PSO478G4170 Papaver somniferum HOM05D005813 ORTHO05D007310 2.7e-23 114.0 128 50.0
CSS0030600 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 8.7e-14 82.4 71 64.8
MELO3C031411.2 Cucumis melo HOM05D000544 ORTHO05D169468 1.7e-09 68.2 38 81.6
DCAR_015902 Daucus carota HOM05D005813 ORTHO05D007310 4.2e-08 63.5 71 49.3
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 1.2e-07 62.0 57 54.4
Lj1g0012756 Lotus japonicus HOM05D003006 ORTHO05D003438 3.5e-07 60.5 301 24.9
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 1.0e-06 58.9 153 28.8
Zm00001eb386980 Zea mays HOM05D000002 ORTHO05D006339 1.0e-06 58.9 153 28.1
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.3e-06 58.5 153 32.7
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 2.3e-06 57.8 178 25.3
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 2.3e-06 57.8 264 21.6
TPR.G22908 Trifolium pratense HOM05D000464 ORTHO05D006292 2.3e-06 57.8 264 22.0
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 3.0e-06 57.4 178 25.8
MELO3C030776.2 Cucumis melo HOM05D005813 ORTHO05D007310 3.0e-06 57.4 35 68.6
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 3.0e-06 57.4 164 28.0
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 5.1e-06 56.6 174 28.2
MCO13G313 Micromonas commoda HOM05D004669 ORTHO05D005767 6.7e-06 56.2 163 26.4
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 6.7e-06 56.2 164 30.5


User provided reference genes

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