Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 9.0e-57 223.8 151 100.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.9e-35 152.9 151 74.8
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 7.4e-35 151.0 151 74.2
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 2.6e-24 115.9 160 60.0
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 6.1e-21 104.8 156 60.3
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 6.1e-21 104.8 161 59.6
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 1.0e-20 104.0 154 60.4
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 1.4e-20 103.6 149 59.7
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.1e-19 100.5 167 59.3
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 5.7e-19 98.2 126 51.6
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 7.4e-19 97.8 112 56.2
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 2.8e-18 95.9 139 48.9
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 2.8e-18 95.9 141 57.4
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 3.7e-18 95.5 109 54.1
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 6.3e-18 94.7 120 59.2
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 6.3e-18 94.7 106 50.9
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 3.1e-17 92.4 76 76.3
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 4.1e-17 92.0 80 93.8
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 4.1e-17 92.0 61 88.5
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 4.1e-17 92.0 61 88.5
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 4.1e-17 92.0 61 72.1
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 5.3e-17 91.7 61 77.0
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 5.3e-17 91.7 142 57.7
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 5.3e-17 91.7 61 72.1
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 7.0e-17 91.3 106 52.8
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.0e-17 91.3 111 55.0
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 9.1e-17 90.9 111 55.0
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-16 90.5 111 55.0
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.2e-16 90.5 111 49.5
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 2.0e-16 89.7 97 56.7
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 2.6e-16 89.4 83 59.0
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 2.6e-16 89.4 60 88.3
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.5e-16 89.0 114 59.6
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 3.5e-16 89.0 125 44.8
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 4.5e-16 88.6 121 51.2
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.5e-16 88.6 64 79.7
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 4.5e-16 88.6 125 58.4
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 5.9e-16 88.2 130 50.8
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 5.9e-16 88.2 106 54.7
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 7.7e-16 87.8 72 68.1
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 7.7e-16 87.8 66 65.2
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-15 87.4 112 47.3
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 1.0e-15 87.4 134 47.8
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.0e-15 87.4 102 54.9
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 2.2e-15 86.3 59 69.5
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 2.2e-15 86.3 59 69.5
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 2.2e-15 86.3 59 69.5
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.2e-15 86.3 50 78.0
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 2.2e-15 86.3 131 63.4
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 2.9e-15 85.9 120 48.3
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 2.9e-15 85.9 43 90.7
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 5.0e-15 85.1 124 47.6
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 5.0e-15 85.1 124 47.6
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 6.5e-15 84.7 122 45.1
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 8.5e-15 84.3 98 54.1
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 8.5e-15 84.3 48 81.2
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.1e-14 84.0 117 54.7
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.5e-14 83.6 124 54.0
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.5e-14 83.6 43 86.0
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 1.5e-14 83.6 102 61.8
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 1.9e-14 83.2 58 69.0
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.5e-14 82.8 165 53.3
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 3.2e-14 82.4 56 69.6
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 4.2e-14 82.0 161 53.4
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 5.5e-14 81.6 52 84.6
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 7.2e-14 81.3 133 46.6
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 7.2e-14 81.3 49 79.6
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 7.2e-14 81.3 88 53.4
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 9.4e-14 80.9 121 43.8
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 9.4e-14 80.9 152 54.6
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-13 80.5 122 44.3
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-13 80.5 122 44.3
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.2e-13 80.5 122 44.3
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 1.2e-13 80.5 114 45.6
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.2e-13 80.5 44 84.1
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 1.2e-13 80.5 52 96.2
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.6e-13 80.1 112 48.2
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.6e-13 80.1 103 47.6
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 2.1e-13 79.7 95 51.6
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 2.7e-13 79.3 161 54.7
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 2.7e-13 79.3 121 44.6
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 3.6e-13 79.0 97 53.6
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 3.6e-13 79.0 79 55.7
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 4.7e-13 78.6 120 52.5
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 4.7e-13 78.6 41 82.9
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 6.1e-13 78.2 41 80.5
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 6.1e-13 78.2 127 44.9
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 8.0e-13 77.8 122 46.7
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 1.0e-12 77.4 123 45.5
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 1.4e-12 77.0 104 51.0
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 1.8e-12 76.6 77 81.8
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 2.3e-12 76.3 108 50.0
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 2.3e-12 76.3 76 60.5
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 2.3e-12 76.3 110 49.1
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.3e-12 76.3 122 50.8
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.3e-12 76.3 95 48.4
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 3.0e-12 75.9 124 46.0
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 3.0e-12 75.9 99 49.5
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.0e-12 75.9 84 56.0
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 3.0e-12 75.9 48 72.9
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 4.0e-12 75.5 104 51.0
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 4.0e-12 75.5 103 52.4
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 8.8e-12 74.3 52 69.2
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 8.8e-12 74.3 42 78.6
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.2e-11 73.9 35 91.4
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.2e-11 73.9 35 91.4
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.2e-11 73.9 105 50.5
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-11 73.9 108 50.0
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 1.2e-11 73.9 88 51.1
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 1.5e-11 73.6 126 44.4
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 1.5e-11 73.6 44 77.3
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.5e-11 73.6 108 47.2
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.5e-11 73.6 44 77.3
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 2.0e-11 73.2 38 84.2
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 4.4e-11 72.0 35 85.7
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 7.5e-11 71.2 42 76.2
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 7.5e-11 71.2 35 85.7
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 7.5e-11 71.2 35 85.7
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 9.7e-11 70.9 91 50.5
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 1.3e-10 70.5 88 45.5
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 1.7e-10 70.1 35 80.0
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 1.7e-10 70.1 105 42.9
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 2.2e-10 69.7 123 45.5
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 6.3e-10 68.2 106 45.3
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 3.1e-09 65.9 117 41.9
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 1.0e-07 60.8 106 43.4


User provided reference genes

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