Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 1.5e-112 409.5 194 100.0
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 6.3e-103 377.5 194 92.8
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 2.4e-94 349.0 237 72.6
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 9.4e-91 337.0 194 80.9
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-90 336.7 192 80.7
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.1e-90 335.9 195 81.5
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.7e-90 335.5 192 79.2
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 3.0e-89 332.0 188 82.4
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 3.9e-89 331.6 194 79.9
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 6.7e-89 330.9 228 72.4
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 6.7e-89 330.9 228 72.4
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 1.7e-87 326.2 194 78.4
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.0e-85 319.3 200 76.0
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.0e-84 317.0 200 75.5
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 1.3e-84 316.6 204 72.1
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.3e-84 316.6 194 76.8
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 5.0e-84 314.7 192 75.0
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 6.5e-84 314.3 193 73.6
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 9.4e-83 310.5 192 75.0
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 4.7e-82 308.1 200 74.0
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.0e-81 307.0 178 80.9
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.0e-81 307.0 192 74.5
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 5.1e-81 304.7 200 72.5
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 8.8e-81 303.9 200 72.0
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 2.0e-80 302.8 193 71.0
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 2.6e-80 302.4 200 71.5
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 1.8e-78 296.2 192 71.4
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 2.4e-78 295.8 192 70.3
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 9.1e-78 293.9 192 66.1
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 2.0e-77 292.7 199 70.4
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 3.5e-77 292.0 234 64.1
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 5.9e-77 291.2 192 69.8
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 1.0e-76 290.4 203 68.5
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 1.0e-76 290.4 238 63.4
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.3e-76 290.0 194 70.1
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 5.0e-76 288.1 194 70.1
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 8.5e-76 287.3 194 70.1
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 1.1e-75 287.0 194 64.4
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.9e-75 286.2 194 64.4
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 1.9e-75 286.2 195 69.7
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 3.2e-75 285.4 194 63.9
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.2e-75 285.4 194 65.5
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 4.2e-75 285.0 199 68.8
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 4.2e-75 285.0 184 74.5
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 5.5e-75 284.6 195 68.2
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 7.2e-75 284.3 177 73.4
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 1.6e-74 283.1 199 68.8
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 2.7e-74 282.3 192 63.5
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 3.6e-74 282.0 196 68.9
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 8.0e-74 280.8 193 68.9
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 1.4e-73 280.0 203 66.0
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 4.0e-73 278.5 201 67.2
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 1.5e-72 276.6 192 66.7
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 3.3e-72 275.4 194 68.6
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 7.5e-72 274.2 194 69.1
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 1.7e-71 273.1 194 63.4
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 1.7e-71 273.1 193 66.8
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 2.2e-71 272.7 208 60.6
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.2e-71 272.7 205 64.9
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.2e-71 272.7 205 64.9
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 2.8e-71 272.3 194 62.9
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 2.8e-71 272.3 194 61.9
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 1.1e-70 270.4 205 64.9
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 1.4e-70 270.0 194 67.5
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 3.1e-70 268.9 192 70.3
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 4.1e-70 268.5 223 58.3
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 5.9e-69 264.6 193 59.1
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 7.7e-69 264.2 208 60.6
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 7.7e-69 264.2 210 57.6
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 1.3e-68 263.5 168 72.0
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 1.7e-68 263.1 195 65.1
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 2.9e-68 262.3 193 59.6
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 2.9e-68 262.3 193 59.6
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 2.9e-68 262.3 193 59.6
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 3.2e-67 258.8 191 68.1
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 5.5e-67 258.1 182 62.6
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 1.4e-65 253.4 207 59.4
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 2.3e-65 252.7 208 58.7
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 8.8e-65 250.8 193 58.0
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 1.2e-64 250.4 206 59.2
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 1.5e-64 250.0 192 58.9
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 3.4e-64 248.8 192 61.5
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 5.7e-64 248.1 194 61.9
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 1.3e-63 246.9 198 57.1
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 1.7e-63 246.5 192 62.0
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 6.3e-63 244.6 178 62.9
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 1.4e-62 243.4 178 64.6
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 2.4e-62 242.7 192 61.5
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 7.0e-62 241.1 191 63.4
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 1.6e-61 240.0 222 50.5
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 2.2e-60 236.1 261 46.0
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 5.0e-60 235.0 194 60.8
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.2e-59 231.9 210 55.2
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 2.1e-58 229.6 192 56.2
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 2.7e-58 229.2 192 53.1
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 8.0e-58 227.6 192 54.7
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.0e-57 227.3 192 54.2
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 1.4e-57 226.9 194 56.7
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 8.8e-57 224.2 135 83.0
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.2e-56 223.8 193 53.9
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.4e-56 221.9 177 62.1
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.7e-55 219.9 193 57.0
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 2.4e-54 216.1 164 62.2
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 3.1e-54 215.7 192 54.2
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 5.4e-54 214.9 192 53.6
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 3.5e-53 212.2 156 66.7
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 1.2e-50 203.8 122 73.8
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 2.1e-50 203.0 162 63.0
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 3.6e-50 202.2 192 46.4
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 2.3e-44 183.0 204 43.1
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 9.5e-43 177.6 193 47.7
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 1.6e-42 176.8 132 65.2
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 5.2e-41 171.8 132 61.4
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 2.9e-39 166.0 127 60.6
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 2.9e-39 166.0 204 40.2
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.1e-38 164.1 192 47.9
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 3.5e-37 159.1 115 64.3
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.0e-36 157.5 98 73.5
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 3.0e-36 156.0 199 44.7
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 5.6e-35 151.8 114 63.2
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.4e-32 142.1 140 55.0
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 3.7e-31 139.0 96 70.8
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 1.1e-30 137.5 104 66.3
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.4e-30 135.2 98 68.4
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 7.1e-30 134.8 94 56.4
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 6.0e-29 131.7 101 66.3
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 6.6e-28 128.3 98 61.2
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.2e-25 118.6 101 62.4
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 5.8e-24 115.2 102 54.9
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.4e-23 111.7 75 74.7
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 5.4e-22 108.6 70 72.9
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 9.2e-22 107.8 105 48.6
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 2.1e-21 106.7 79 55.7
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 4.6e-21 105.5 102 53.9
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 7.8e-21 104.8 62 71.0
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.6e-20 101.3 78 60.3
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 5.6e-19 98.6 68 72.1
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.2e-18 97.4 67 62.7
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 2.8e-18 96.3 68 64.7
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 4.2e-14 82.4 63 61.9
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 4.6e-13 79.0 47 70.2
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 7.8e-13 78.2 156 32.7
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 1.0e-12 77.8 117 36.8
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 1.0e-12 77.8 43 76.7
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 2.3e-12 76.6 61 54.1
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-10 70.9 55 58.2
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 6.2e-10 68.6 105 43.8
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 6.2e-10 68.6 40 75.0
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.4e-09 66.6 52 55.8
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 3.4e-08 62.8 41 63.4
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 4.5e-08 62.4 34 70.6
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 4.5e-08 62.4 41 63.4
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 7.6e-08 61.6 45 60.0
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.1e-06 57.8 60 56.7
THA.LOC104799424 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 1.1e-06 57.8 127 27.6
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 1.1e-06 57.8 37 70.3
THA.LOC104810752 Tarenaya hassleriana HOM05D004044 ORTHO05D004841 2.4e-06 56.6 127 27.6
Lj2g0017435 Lotus japonicus HOM05D004044 ORTHO05D004841 4.2e-06 55.8 121 27.3
Lj6g0006771 Lotus japonicus HOM05D004044 ORTHO05D004841 5.4e-06 55.5 121 26.4
FAN16G3049 Fragaria x ananassa HOM05D004774 ORTHO05D005514 9.3e-06 54.7 45 55.6
Potri.001G377200 Populus trichocarpa HOM05D004044 ORTHO05D004841 9.3e-06 54.7 121 27.3


User provided reference genes

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