Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 5.0e-70 267.7 138 100.0
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 7.2e-53 210.7 125 80.8
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 5.2e-51 204.5 123 83.7
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 9.7e-50 200.3 123 78.0
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 2.0e-47 192.6 123 75.6
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 6.5e-46 187.6 124 76.6
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 1.1e-45 186.8 124 76.6
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 4.2e-45 184.9 123 70.7
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 2.1e-44 182.6 127 74.8
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 3.6e-44 181.8 122 74.6
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 4.7e-44 181.4 123 74.0
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 6.1e-44 181.0 124 68.5
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 8.0e-44 180.6 125 67.2
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 1.8e-43 179.5 123 72.4
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 2.3e-43 179.1 123 72.4
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 3.0e-43 178.7 123 68.3
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 8.8e-43 177.2 123 69.1
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 8.8e-43 177.2 127 70.9
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.5e-42 176.4 123 69.1
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 3.4e-42 175.3 124 68.5
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 3.4e-42 175.3 125 63.2
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 3.4e-42 175.3 127 70.1
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 5.7e-42 174.5 122 74.6
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 5.7e-42 174.5 123 65.9
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 9.8e-42 173.7 123 68.3
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 2.2e-41 172.6 124 65.3
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 4.8e-41 171.4 122 68.0
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 4.8e-41 171.4 123 66.7
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 4.8e-41 171.4 123 66.7
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 8.3e-41 170.6 125 64.0
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 1.4e-40 169.9 121 71.1
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 1.8e-40 169.5 124 65.3
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 4.1e-40 168.3 123 65.0
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 5.4e-40 167.9 127 61.4
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 5.4e-40 167.9 123 65.9
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 7.0e-40 167.5 124 61.3
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 1.6e-39 166.4 123 65.9
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 1.6e-39 166.4 134 67.2
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 2.7e-39 165.6 123 63.4
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 4.5e-39 164.9 123 65.0
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 4.5e-39 164.9 123 65.9
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 4.5e-39 164.9 123 65.0
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 7.7e-39 164.1 124 62.1
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 1.0e-38 163.7 123 65.0
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.0e-38 163.7 123 61.8
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 1.3e-38 163.3 123 63.4
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 2.9e-38 162.2 124 62.9
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 8.5e-38 160.6 111 66.7
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 1.1e-37 160.2 123 62.6
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 4.2e-37 158.3 122 62.3
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 5.5e-37 157.9 124 62.1
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 7.2e-37 157.5 121 66.1
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 9.4e-37 157.1 123 63.4
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 2.1e-36 156.0 122 61.5
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 2.1e-36 156.0 123 61.8
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 8.0e-36 154.1 141 55.3
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 1.0e-35 153.7 124 62.9
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 1.4e-35 153.3 123 61.8
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 1.8e-35 152.9 123 61.8
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 1.8e-35 152.9 123 61.0
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 2.3e-35 152.5 128 59.4
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 3.0e-35 152.1 125 63.2
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 5.2e-35 151.4 116 61.2
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 6.8e-35 151.0 123 57.7
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 1.2e-34 150.2 124 59.7
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 2.0e-34 149.4 127 59.1
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 2.0e-34 149.4 129 63.6
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 3.4e-34 148.7 123 61.0
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 4.4e-34 148.3 123 62.6
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 5.7e-34 147.9 127 58.3
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 5.7e-34 147.9 127 58.3
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 7.5e-34 147.5 123 60.2
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 9.8e-34 147.1 127 57.5
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.7e-33 146.4 123 59.3
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 2.2e-33 146.0 123 59.3
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 2.2e-33 146.0 127 58.3
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 3.7e-33 145.2 123 59.3
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 4.9e-33 144.8 127 57.5
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 4.9e-33 144.8 124 60.5
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 6.3e-33 144.4 126 54.0
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 8.3e-33 144.1 121 55.4
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 1.8e-32 142.9 125 60.0
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 4.1e-32 141.7 121 53.7
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 5.4e-32 141.4 125 60.0
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 7.7e-31 137.5 125 56.8
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 7.7e-31 137.5 124 57.3
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 1.0e-30 137.1 123 56.1
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 1.7e-30 136.3 123 55.3
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 1.7e-30 136.3 123 55.3
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 1.7e-30 136.3 123 55.3
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 1.7e-30 136.3 123 55.3
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 1.7e-30 136.3 123 55.3
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 5.0e-30 134.8 124 57.3
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 5.0e-30 134.8 144 50.7
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 1.1e-29 133.7 144 50.7
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 4.2e-29 131.7 125 56.0
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 7.2e-29 131.0 102 61.8
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 6.1e-28 127.9 118 53.4
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 2.3e-27 125.9 107 58.9
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 4.0e-27 125.2 106 58.5
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 3.4e-26 122.1 88 65.9
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 7.5e-26 120.9 88 70.5
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 7.0e-24 114.4 88 63.6
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.3e-22 110.2 121 55.4
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 1.5e-21 106.7 82 61.0
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 3.3e-21 105.5 108 49.1
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 8.0e-20 100.9 68 69.1
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 3.1e-19 99.0 151 41.1
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 2.0e-18 96.3 93 53.8
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 7.5e-18 94.4 95 50.5
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 2.2e-17 92.8 112 44.6
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 4.9e-17 91.7 63 65.1
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 7.3e-13 77.8 113 40.7
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 1.2e-12 77.0 135 36.3
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 2.1e-12 76.3 105 40.0
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 2.1e-12 76.3 105 40.0
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 6.2e-12 74.7 57 61.4
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 8.1e-12 74.3 73 50.7
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 1.1e-11 73.9 64 62.5
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 1.4e-11 73.6 63 58.7
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 6.8e-11 71.2 58 58.6
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 9.8e-10 67.4 58 55.2
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 3.7e-09 65.5 60 53.3
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 1.1e-08 63.9 113 38.1
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 1.1e-08 63.9 113 38.1
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 1.0e-06 57.4 50 62.0
SGA_v2.0_scaffold74G24592 Striga asiatica HOM05D000172 ORTHO05D008216 1.0e-06 57.4 46 58.7
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 3.0e-06 55.8 42 59.5


User provided reference genes

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