Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 3.2e-181 638.3 319 100.0
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.1e-117 427.2 338 70.7
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 7.9e-103 377.9 341 62.8
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 2.5e-101 372.9 340 64.4
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 6.2e-100 368.2 340 64.1
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 4.5e-98 362.1 348 59.5
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 3.8e-97 359.0 353 59.8
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 5.5e-96 355.1 341 59.5
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 4.6e-95 352.1 330 59.1
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.8e-94 350.1 342 59.1
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 2.3e-94 349.7 336 60.4
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 3.3e-93 345.9 350 58.0
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 4.3e-93 345.5 348 60.1
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 4.3e-93 345.5 348 60.1
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 2.1e-92 343.2 314 64.6
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 4.1e-91 339.0 342 59.4
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 6.9e-91 338.2 316 62.7
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.6e-90 336.3 340 58.5
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 1.0e-89 334.3 347 55.6
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 2.2e-89 333.2 343 56.9
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 2.9e-89 332.8 346 56.4
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 2.9e-89 332.8 342 58.5
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 5.0e-89 332.0 341 56.9
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.1e-88 330.9 347 55.6
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.1e-88 330.9 348 55.2
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 4.6e-87 325.5 338 56.5
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 3.9e-86 322.4 319 62.1
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 8.7e-86 321.2 343 56.6
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.3e-85 319.3 340 55.9
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 7.4e-85 318.2 336 57.1
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.6e-84 317.0 340 55.9
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 3.7e-84 315.8 315 59.4
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 8.2e-84 314.7 348 56.0
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 5.3e-83 312.0 358 54.5
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 6.9e-83 311.6 321 53.3
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 1.2e-82 310.8 348 55.7
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 3.4e-82 309.3 329 55.3
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 1.0e-81 307.8 345 53.3
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 2.2e-81 306.6 337 58.5
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 2.9e-81 306.2 343 54.2
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 8.5e-81 304.7 331 53.2
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.1e-80 304.3 336 52.4
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.9e-80 303.5 342 52.6
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 7.2e-80 301.6 336 54.8
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 4.6e-79 298.9 332 52.7
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.4e-78 297.4 338 51.8
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.1e-77 294.3 344 52.9
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.0e-77 293.5 333 51.7
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 4.3e-77 292.4 333 51.4
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.3e-76 290.8 340 50.3
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 2.8e-76 289.7 333 51.1
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 1.8e-75 287.0 344 50.9
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.2e-74 284.3 315 53.7
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 4.5e-74 282.3 333 51.7
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 1.0e-73 281.2 333 52.3
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 2.5e-72 276.6 292 54.1
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.7e-70 268.5 315 51.1
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 1.5e-69 267.3 336 48.8
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 3.3e-69 266.2 335 51.0
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 4.4e-69 265.8 338 50.9
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 2.8e-68 263.1 338 53.0
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 3.7e-68 262.7 333 48.0
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 4.8e-68 262.3 344 51.2
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 6.3e-68 261.9 333 47.4
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 8.2e-68 261.5 342 46.5
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 5.3e-67 258.8 336 48.2
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 5.3e-67 258.8 345 47.8
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 1.6e-66 257.3 326 46.9
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 1.6e-66 257.3 330 47.0
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 2.0e-66 256.9 327 49.8
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.6e-66 256.5 344 48.3
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 3.5e-66 256.1 329 47.1
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 4.5e-66 255.8 326 46.9
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 4.5e-66 255.8 326 46.9
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 5.0e-65 252.3 356 50.0
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 6.5e-65 251.9 326 47.9
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 8.5e-65 251.5 332 48.8
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.9e-64 250.4 340 49.4
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 1.9e-64 250.4 334 47.6
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 5.5e-64 248.8 328 47.3
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 1.2e-63 247.7 333 47.4
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.6e-63 247.3 357 48.7
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 2.7e-63 246.5 333 47.4
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 4.7e-63 245.7 411 42.6
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.8e-62 243.8 340 48.5
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 3.0e-62 243.0 334 46.1
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 6.7e-62 241.9 308 49.4
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 2.0e-61 240.4 307 49.8
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 4.8e-60 235.7 335 45.4
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 3.1e-59 233.0 344 45.3
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 5.3e-59 232.3 191 71.7
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 2.7e-58 229.9 191 71.2
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 5.9e-58 228.8 314 50.0
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 2.9e-57 226.5 401 42.4
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 5.0e-57 225.7 314 47.1
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 6.5e-57 225.3 360 43.3
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 2.5e-56 223.4 324 47.2
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 2.1e-55 220.3 325 46.8
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 6.1e-55 218.8 316 45.3
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 1.4e-54 217.6 185 63.8
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.8e-54 217.2 328 44.5
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 5.2e-54 215.7 401 41.4
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 5.7e-53 212.2 336 39.0
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 5.9e-50 202.2 325 43.4
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.7e-49 200.7 188 58.0
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 1.6e-47 194.1 260 48.1
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 8.0e-47 191.8 344 41.9
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 8.8e-46 188.3 324 42.3
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 5.7e-45 185.7 347 39.2
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 1.3e-44 184.5 309 42.1
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.7e-44 184.1 187 58.3
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 4.9e-44 182.6 199 54.3
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 9.2e-43 178.3 242 48.3
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 5.9e-42 175.6 262 45.4
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 1.7e-41 174.1 313 37.1
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 6.6e-41 172.2 189 55.0
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 6.6e-41 172.2 316 39.6
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 2.5e-40 170.2 336 36.6
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 6.1e-39 165.6 320 39.4
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 1.0e-38 164.9 190 53.2
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 7.5e-37 158.7 320 36.9
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 7.0e-35 152.1 120 58.3
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 3.0e-33 146.7 118 68.6
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 7.3e-32 142.1 311 38.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 3.4e-29 133.3 267 42.3
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 5.4e-27 125.9 216 41.7
Dinv07827 Davidia involucrata HOM05D005715 ORTHO05D007160 2.5e-24 117.1 72 86.1
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.9e-19 100.9 167 34.7
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.0e-17 95.1 154 38.3
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 1.3e-17 94.7 338 32.0
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 2.3e-17 94.0 155 45.8
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 3.0e-17 93.6 96 57.3
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 6.6e-17 92.4 152 40.1
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 1.9e-16 90.9 160 37.5
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 6.2e-15 85.9 154 36.4
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 5.2e-14 82.8 163 35.6
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 8.9e-14 82.0 154 35.1
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 4.4e-13 79.7 318 28.0
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 2.7e-10 70.5 85 42.4
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 1.7e-09 67.8 137 38.0
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 8.6e-09 65.5 159 29.6
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-08 64.7 154 30.5
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-08 64.7 154 30.5
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-08 64.7 154 30.5
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-08 64.7 154 30.5
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 1.5e-08 64.7 154 30.5
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 3.3e-08 63.5 154 29.9
MBI11_g00913_MAGBIO Magnolia biondii HOM05D001735 ORTHO05D001640 8.1e-07 58.9 190 26.3
Actinidia08859 Actinidia chinensis HOM05D001735 ORTHO05D001640 1.8e-06 57.8 157 27.4
CDE04G1528 Ceratophyllum demersum HOM05D001735 ORTHO05D001640 1.8e-06 57.8 165 29.1
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 3.1e-06 57.0 320 23.8
Dinv04851 Davidia involucrata HOM05D001735 ORTHO05D001640 4.0e-06 56.6 157 31.2
Nn4g22410 Nelumbo nucifera HOM05D001735 ORTHO05D001640 4.0e-06 56.6 161 28.6
Aqoxy5G03520 Aquilegia oxysepala HOM05D001735 ORTHO05D001640 5.2e-06 56.2 160 26.9
TAR374G1031 Trochodendron aralioides HOM05D001735 ORTHO05D001640 8.9e-06 55.5 217 26.7


User provided reference genes

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